Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3478
Gene name
LocationContig_1909:2381..3965
Strand-
Gene length (bp)1584
Transcript length (bp)1434
Coding sequence length (bp)1434
Protein length (aa) 478

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03348 Serinc Serine incorporator (Serinc) 6.8E-157 24 474

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q12116|TMS1_YEAST Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 1 475 2.0E-137
sp|Q9HDY3|YK17_SCHPO Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 1 476 5.0E-111
sp|A7S4N4|SERIC_NEMVE Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 23 473 1.0E-82
sp|Q5R533|SERC3_PONAB Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 11 473 2.0E-70
sp|Q13530|SERC3_HUMAN Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 11 473 5.0E-69
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Swissprot ID Swissprot Description Start End E-value
sp|Q12116|TMS1_YEAST Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 1 475 2.0E-137
sp|Q9HDY3|YK17_SCHPO Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 1 476 5.0E-111
sp|A7S4N4|SERIC_NEMVE Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 23 473 1.0E-82
sp|Q5R533|SERC3_PONAB Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 11 473 2.0E-70
sp|Q13530|SERC3_HUMAN Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 11 473 5.0E-69
sp|Q7TNK0|SERC1_RAT Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1 11 475 3.0E-68
sp|Q9QZI8|SERC1_MOUSE Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 11 475 5.0E-67
sp|Q3MHV9|SERC1_BOVIN Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1 11 475 5.0E-66
sp|Q5R419|SERC1_PONAB Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1 11 475 2.0E-65
sp|Q9NRX5|SERC1_HUMAN Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1 11 475 3.0E-65
sp|A4FUZ5|SERC3_BOVIN Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1 11 473 7.0E-65
sp|A9UY97|SERIC_MONBE Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1 23 473 2.0E-53
sp|Q54UF8|SERIC_DICDI Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1 43 473 7.0E-53
sp|Q9QZI9|SERC3_MOUSE Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2 11 473 9.0E-51
sp|Q8K0E7|SERC2_MOUSE Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1 17 473 1.0E-48
sp|Q96SA4|SERC2_HUMAN Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=3 17 473 3.0E-47
sp|Q8BHJ6|SERC5_MOUSE Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1 23 473 2.0E-45
sp|Q58CW5|SERC2_BOVIN Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1 17 473 3.0E-45
sp|Q803X0|SERC5_DANRE Serine incorporator 5 OS=Danio rerio GN=serinc5 PE=2 SV=1 20 475 1.0E-41
sp|Q63175|SERC5_RAT Serine incorporator 5 OS=Rattus norvegicus GN=Serinc5 PE=2 SV=1 23 473 5.0E-40
sp|Q86VE9|SERC5_HUMAN Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1 23 424 9.0E-36
sp|Q4R6L9|SERC5_MACFA Serine incorporator 5 OS=Macaca fascicularis GN=SERINC5 PE=2 SV=1 93 473 2.0E-35
sp|A6NH21|SERC4_HUMAN Serine incorporator 4 OS=Homo sapiens GN=SERINC4 PE=2 SV=1 25 456 2.0E-33
sp|Q5XK03|SERC4_MOUSE Serine incorporator 4 OS=Mus musculus GN=Serinc4 PE=2 SV=1 23 456 2.0E-25
sp|A8WCG0|SERC4_RAT Serine incorporator 4 OS=Rattus norvegicus GN=Serinc4 PE=2 SV=2 24 456 5.0E-24
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GO

GO Term Description Terminal node
GO:0016020 membrane Yes
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22
2 49 71 22
3 97 119 22
4 132 151 19
5 161 183 22
6 204 226 22
7 236 258 22
8 265 287 22
9 302 324 22
10 403 425 22
11 450 469 19

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3478
MGAALSLPLLAVPSLGTITSLAASCCGAATCSMVCSVCGKCGNSVATRVAYAILLLVNSILAWIMLTPWAIKKLQ
HLTLDYVKIHCPTGQCYGWLAVHRINFALGMLHLMLAGVLFGVTTSKDPRASIQNGYWGPKILAWLGLIAIAFMI
PDKFFMFYGNYVSFVCAMAFLLLGLILLIDLAHTWAEYCLTQIDDRDSKLWRFALIGSTLGMYLVSIGMSVVQYI
FFATGHCSMNQAVITINLLLWLAVSVISIHPTVQEYNPRAGLAQAAMVSIYCTYLTMSAVSMEPDDKQCNPLVRA
QGTRTTSVIIGAIVTMLTIAYTTTRAATQSLGFRSSHGIRLSDEDDQHSLVTQQPGARREMRAEALRRAVEEGSL
PAEALLTDAESDVYGDATLDDELSRTQYNYTAFHVIFFLATAWVSTLLTLKHEETPQDGDFATVGRTYAASWVKI
ASAWMCYGLYVWTLLAPILLPDRFDIL*
Coding >Hirsu2|3478
ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGATAACGTCGCTCGCGGCAAGTTGC
TGTGGGGCTGCGACTTGCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGTGTGGCCACGCGTGTCGCG
TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA
CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT
AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT
GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC
CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC
ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT
TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC
TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT
GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT
TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA
CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC
GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT
GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA
CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC
ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG
AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA
GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC
ATATTATAG
Transcript >Hirsu2|3478
ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGATAACGTCGCTCGCGGCAAGTTGC
TGTGGGGCTGCGACTTGCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGTGTGGCCACGCGTGTCGCG
TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA
CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT
AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT
GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC
CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC
ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT
TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC
TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT
GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT
TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA
CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC
GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT
GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA
CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC
ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG
AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA
GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC
ATATTATAG
Gene >Hirsu2|3478
ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGGTACGCCCACACGTCCTCGTCTTT
CAAGCTCGCATTTCGCCTCATCATTCATTCTGCAGATAACGTCGCTCGCGGCAAGTTGCTGTGGGGCTGCGACTT
GCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGGTAATGAATTGCTTGTTCGCTGCTTTTACTGTGTG
ACAAGAGGCTCGCCCTCCGTCTCCCGGCATGATCACTGACTGGAGCTTCCATGCAGTGTGGCCACGCGTGTCGCG
TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA
CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT
AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT
GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC
CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC
ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT
TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC
TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT
GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT
TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA
CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC
GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT
GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA
CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC
ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG
AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA
GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC
ATATTATAG

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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