© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3478 |
| Gene name | |
| Location | Contig_1909:2381..3965 |
| Strand | - |
| Gene length (bp) | 1584 |
| Transcript length (bp) | 1434 |
| Coding sequence length (bp) | 1434 |
| Protein length (aa) | 478 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03348 | Serinc | Serine incorporator (Serinc) | 9.0E-171 | 23 | 473 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 475 | 2.0E-137 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 476 | 5.0E-111 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 23 | 473 | 1.0E-82 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 11 | 473 | 2.0E-70 |
| sp|Q13530|SERC3_HUMAN | Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 | 11 | 473 | 5.0E-69 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q12116|TMS1_YEAST | Membrane protein TMS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TMS1 PE=1 SV=1 | 1 | 475 | 2.0E-137 |
| sp|Q9HDY3|YK17_SCHPO | Membrane protein PB1A10.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB1A10.07c PE=3 SV=1 | 1 | 476 | 5.0E-111 |
| sp|A7S4N4|SERIC_NEMVE | Probable serine incorporator OS=Nematostella vectensis GN=serinc PE=3 SV=1 | 23 | 473 | 1.0E-82 |
| sp|Q5R533|SERC3_PONAB | Serine incorporator 3 OS=Pongo abelii GN=SERINC3 PE=2 SV=1 | 11 | 473 | 2.0E-70 |
| sp|Q13530|SERC3_HUMAN | Serine incorporator 3 OS=Homo sapiens GN=SERINC3 PE=2 SV=2 | 11 | 473 | 5.0E-69 |
| sp|Q7TNK0|SERC1_RAT | Serine incorporator 1 OS=Rattus norvegicus GN=Serinc1 PE=1 SV=1 | 11 | 475 | 3.0E-68 |
| sp|Q9QZI8|SERC1_MOUSE | Serine incorporator 1 OS=Mus musculus GN=Serinc1 PE=1 SV=1 | 11 | 475 | 5.0E-67 |
| sp|Q3MHV9|SERC1_BOVIN | Serine incorporator 1 OS=Bos taurus GN=SERINC1 PE=2 SV=1 | 11 | 475 | 5.0E-66 |
| sp|Q5R419|SERC1_PONAB | Serine incorporator 1 OS=Pongo abelii GN=SERINC1 PE=2 SV=1 | 11 | 475 | 2.0E-65 |
| sp|Q9NRX5|SERC1_HUMAN | Serine incorporator 1 OS=Homo sapiens GN=SERINC1 PE=1 SV=1 | 11 | 475 | 3.0E-65 |
| sp|A4FUZ5|SERC3_BOVIN | Serine incorporator 3 OS=Bos taurus GN=SERINC3 PE=2 SV=1 | 11 | 473 | 7.0E-65 |
| sp|A9UY97|SERIC_MONBE | Probable serine incorporator OS=Monosiga brevicollis GN=serinc PE=3 SV=1 | 23 | 473 | 2.0E-53 |
| sp|Q54UF8|SERIC_DICDI | Probable serine incorporator OS=Dictyostelium discoideum GN=serinc PE=3 SV=1 | 43 | 473 | 7.0E-53 |
| sp|Q9QZI9|SERC3_MOUSE | Serine incorporator 3 OS=Mus musculus GN=Serinc3 PE=1 SV=2 | 11 | 473 | 9.0E-51 |
| sp|Q8K0E7|SERC2_MOUSE | Serine incorporator 2 OS=Mus musculus GN=Serinc2 PE=2 SV=1 | 17 | 473 | 1.0E-48 |
| sp|Q96SA4|SERC2_HUMAN | Serine incorporator 2 OS=Homo sapiens GN=SERINC2 PE=2 SV=3 | 17 | 473 | 3.0E-47 |
| sp|Q8BHJ6|SERC5_MOUSE | Serine incorporator 5 OS=Mus musculus GN=Serinc5 PE=2 SV=1 | 23 | 473 | 2.0E-45 |
| sp|Q58CW5|SERC2_BOVIN | Serine incorporator 2 OS=Bos taurus GN=SERINC2 PE=2 SV=1 | 17 | 473 | 3.0E-45 |
| sp|Q803X0|SERC5_DANRE | Serine incorporator 5 OS=Danio rerio GN=serinc5 PE=2 SV=1 | 20 | 475 | 1.0E-41 |
| sp|Q63175|SERC5_RAT | Serine incorporator 5 OS=Rattus norvegicus GN=Serinc5 PE=2 SV=1 | 23 | 473 | 5.0E-40 |
| sp|Q86VE9|SERC5_HUMAN | Serine incorporator 5 OS=Homo sapiens GN=SERINC5 PE=2 SV=1 | 23 | 424 | 9.0E-36 |
| sp|Q4R6L9|SERC5_MACFA | Serine incorporator 5 OS=Macaca fascicularis GN=SERINC5 PE=2 SV=1 | 93 | 473 | 2.0E-35 |
| sp|A6NH21|SERC4_HUMAN | Serine incorporator 4 OS=Homo sapiens GN=SERINC4 PE=2 SV=1 | 25 | 456 | 2.0E-33 |
| sp|Q5XK03|SERC4_MOUSE | Serine incorporator 4 OS=Mus musculus GN=Serinc4 PE=2 SV=1 | 23 | 456 | 2.0E-25 |
| sp|A8WCG0|SERC4_RAT | Serine incorporator 4 OS=Rattus norvegicus GN=Serinc4 PE=2 SV=2 | 24 | 456 | 5.0E-24 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cell membrane|Lysosome/Vacuole | Transmembrane domain | 0.102 | 0.0942 | 0.0322 | 0.6522 | 0.15 | 0.0211 | 0.4848 | 0.6944 | 0.5805 | 0.0024 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 49 | 71 | 22 |
| 3 | 97 | 119 | 22 |
| 4 | 132 | 151 | 19 |
| 5 | 161 | 183 | 22 |
| 6 | 204 | 226 | 22 |
| 7 | 236 | 258 | 22 |
| 8 | 265 | 287 | 22 |
| 9 | 302 | 324 | 22 |
| 10 | 403 | 425 | 22 |
| 11 | 450 | 469 | 19 |
| Orthofinder run ID | 4 |
| Orthogroup | 5132 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3478 MGAALSLPLLAVPSLGTITSLAASCCGAATCSMVCSVCGKCGNSVATRVAYAILLLVNSILAWIMLTPWAIKKLQ HLTLDYVKIHCPTGQCYGWLAVHRINFALGMLHLMLAGVLFGVTTSKDPRASIQNGYWGPKILAWLGLIAIAFMI PDKFFMFYGNYVSFVCAMAFLLLGLILLIDLAHTWAEYCLTQIDDRDSKLWRFALIGSTLGMYLVSIGMSVVQYI FFATGHCSMNQAVITINLLLWLAVSVISIHPTVQEYNPRAGLAQAAMVSIYCTYLTMSAVSMEPDDKQCNPLVRA QGTRTTSVIIGAIVTMLTIAYTTTRAATQSLGFRSSHGIRLSDEDDQHSLVTQQPGARREMRAEALRRAVEEGSL PAEALLTDAESDVYGDATLDDELSRTQYNYTAFHVIFFLATAWVSTLLTLKHEETPQDGDFATVGRTYAASWVKI ASAWMCYGLYVWTLLAPILLPDRFDIL* |
| Coding | >Hirsu2|3478 ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGATAACGTCGCTCGCGGCAAGTTGC TGTGGGGCTGCGACTTGCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGTGTGGCCACGCGTGTCGCG TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC ATATTATAG |
| Transcript | >Hirsu2|3478 ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGATAACGTCGCTCGCGGCAAGTTGC TGTGGGGCTGCGACTTGCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGTGTGGCCACGCGTGTCGCG TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC ATATTATAG |
| Gene | >Hirsu2|3478 ATGGGAGCGGCCTTATCCCTCCCACTGCTCGCGGTGCCGAGTCTAGGCACGGTACGCCCACACGTCCTCGTCTTT CAAGCTCGCATTTCGCCTCATCATTCATTCTGCAGATAACGTCGCTCGCGGCAAGTTGCTGTGGGGCTGCGACTT GCTCCATGGTTTGCAGCGTCTGTGGCAAGTGCGGCAACAGGTAATGAATTGCTTGTTCGCTGCTTTTACTGTGTG ACAAGAGGCTCGCCCTCCGTCTCCCGGCATGATCACTGACTGGAGCTTCCATGCAGTGTGGCCACGCGTGTCGCG TATGCGATACTTCTCCTCGTCAATTCCATTCTCGCATGGATCATGCTTACGCCATGGGCCATCAAGAAATTGCAA CATCTGACGCTGGACTACGTCAAGATTCACTGTCCCACGGGACAATGTTACGGATGGTTGGCAGTTCACAGGATT AACTTTGCACTTGGTATGTTGCACTTGATGCTAGCCGGCGTTCTTTTCGGTGTCACCACGTCGAAAGATCCCCGT GCCAGCATTCAAAATGGATATTGGGGCCCTAAGATTCTAGCCTGGCTGGGTTTGATTGCCATCGCCTTTATGATC CCCGACAAGTTTTTTATGTTCTACGGGAACTACGTTTCTTTTGTCTGCGCCATGGCCTTCCTCCTTCTTGGACTC ATCCTGCTCATAGACTTGGCTCATACCTGGGCCGAATACTGTCTTACGCAGATCGACGACCGAGATTCCAAGCTT TGGCGATTTGCCTTGATTGGATCTACCCTGGGCATGTATCTTGTCTCGATAGGCATGAGCGTGGTTCAGTACATC TTCTTTGCCACCGGCCACTGTTCCATGAACCAGGCAGTTATTACCATCAACCTGCTGCTATGGCTGGCCGTGTCT GTTATCTCCATTCACCCAACAGTTCAAGAATACAATCCTCGGGCCGGCCTGGCGCAAGCGGCTATGGTTTCCATT TACTGCACCTATCTGACTATGTCGGCAGTTTCCATGGAGCCCGACGACAAACAGTGCAATCCGCTGGTCCGGGCA CAGGGAACCAGGACGACATCTGTTATTATCGGTGCTATCGTGACGATGCTCACAATCGCCTACACGACGACTCGC GCCGCCACCCAGAGTTTAGGATTTAGGTCTTCTCATGGCATTCGACTATCCGATGAAGATGATCAGCATAGCCTT GTCACGCAACAACCTGGCGCTCGGCGCGAAATGCGAGCTGAGGCTCTTCGTCGCGCCGTTGAAGAGGGCAGCTTA CCTGCCGAGGCTCTTCTGACGGATGCTGAAAGCGACGTCTACGGTGACGCCACGCTCGACGATGAGCTGTCCCGC ACTCAGTATAATTACACCGCGTTTCATGTCATCTTCTTCCTCGCTACCGCCTGGGTGTCGACTCTGCTTACCCTG AAGCACGAGGAGACGCCCCAAGATGGAGATTTTGCTACAGTTGGCCGAACCTATGCTGCCAGCTGGGTCAAGATA GCCAGTGCCTGGATGTGCTACGGCCTCTACGTCTGGACATTATTGGCGCCAATCCTACTGCCGGATCGGTTCGAC ATATTATAG |