Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3475
Gene name
LocationContig_1908:1730..2131
Strand+
Gene length (bp)401
Transcript length (bp)207
Coding sequence length (bp)207
Protein length (aa) 69

Overview

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PFAM Domains

(None)

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|B5FXA0|LYRM5_TAEGU LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5 PE=3 SV=1 8 65 3.0E-10
sp|Q503U1|LYM5A_DANRE LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3 SV=1 1 65 7.0E-10
sp|Q91V16|LYRM5_MOUSE LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=1 SV=1 8 65 6.0E-08
sp|A3KNJ8|LYM5B_DANRE LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3 SV=1 5 65 1.0E-07
sp|B5XCZ6|LYRM5_SALSA LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1 5 65 2.0E-07

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Mitochondrion Mitochondrial transit peptide 0.467 0.2239 0.0332 0.0712 0.8971 0.0759 0.0381 0.051 0.0734 0.0046

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5130
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis map64 (Brazil) OphauB2|6213
Ophiocordyceps camponoti-floridani Ophcf2|03421
Ophiocordyceps camponoti-rufipedis Ophun1|2414
Ophiocordyceps kimflemingae Ophio5|6865
Ophiocordyceps subramaniannii Hirsu2|3475 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3475
MSGPNPELRRQVIAIYKELLYLGREYPLGFGYFRPRLHKAFIARAAERDEARIRAGIEQAHYVKKGTC*
Coding >Hirsu2|3475
ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGAGCTCCTCTACCTGGGGCGCGAA
TACCCTCTCGGCTTCGGCTACTTCCGCCCGCGCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAG
GCCCGGATCCGCGCCGGCATTGAGCAGGCCCACTACGTCAAGAAAGGCACGTGCTGA
Transcript >Hirsu2|3475
ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGAGCTCCTCTACCTGGGGCGCGAA
TACCCTCTCGGCTTCGGCTACTTCCGCCCGCGCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAG
GCCCGGATCCGCGCCGGCATTGAGCAGGCCCACTACGTCAAGAAAGGCACGTGCTGA
Gene >Hirsu2|3475
ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGGTCAGCAAGCCTCCGTCTCTGCC
GCCCCGCCTCCGCCTCTCCCTCCTCTCTCCCTTGCCGTGGACAGGGCGAGAGCGTCGTCGGCCGCATGACGTCGT
GGCTTGGCCCTCGCCCCCTTTGCCCAGCCCACAGCTTCCGAGGACGCGGCGCGGCGCGGGACAAGGTGCTGACGT
CGTCGATGCCGCGAGCGACAGAGCTCCTCTACCTGGGGCGCGAATACCCTCTCGGCTTCGGCTACTTCCGCCCGC
GCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAGGCCCGGATCCGCGCCGGCATTGAGCAGGCCC
ACTACGTCAAGAAAGGCACGTGCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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