Protein ID | Hirsu2|3475 |
Gene name | |
Location | Contig_1908:1730..2131 |
Strand | + |
Gene length (bp) | 401 |
Transcript length (bp) | 207 |
Coding sequence length (bp) | 207 |
Protein length (aa) | 69 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|B5FXA0|LYRM5_TAEGU | LYR motif-containing protein 5 OS=Taeniopygia guttata GN=LYRM5 PE=3 SV=1 | 8 | 65 | 3.0E-10 |
sp|Q503U1|LYM5A_DANRE | LYR motif-containing protein 5A OS=Danio rerio GN=lyrm5a PE=3 SV=1 | 1 | 65 | 7.0E-10 |
sp|Q91V16|LYRM5_MOUSE | LYR motif-containing protein 5 OS=Mus musculus GN=Lyrm5 PE=1 SV=1 | 8 | 65 | 6.0E-08 |
sp|A3KNJ8|LYM5B_DANRE | LYR motif-containing protein 5B OS=Danio rerio GN=lyrm5b PE=3 SV=1 | 5 | 65 | 1.0E-07 |
sp|B5XCZ6|LYRM5_SALSA | LYR motif-containing protein 5 OS=Salmo salar GN=lyrm5 PE=3 SV=1 | 5 | 65 | 2.0E-07 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Mitochondrion | Mitochondrial transit peptide | 0.467 | 0.2239 | 0.0332 | 0.0712 | 0.8971 | 0.0759 | 0.0381 | 0.051 | 0.0734 | 0.0046 |
Orthofinder run ID | 4 |
Orthogroup | 5130 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3475 MSGPNPELRRQVIAIYKELLYLGREYPLGFGYFRPRLHKAFIARAAERDEARIRAGIEQAHYVKKGTC* |
Coding | >Hirsu2|3475 ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGAGCTCCTCTACCTGGGGCGCGAA TACCCTCTCGGCTTCGGCTACTTCCGCCCGCGCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAG GCCCGGATCCGCGCCGGCATTGAGCAGGCCCACTACGTCAAGAAAGGCACGTGCTGA |
Transcript | >Hirsu2|3475 ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGAGCTCCTCTACCTGGGGCGCGAA TACCCTCTCGGCTTCGGCTACTTCCGCCCGCGCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAG GCCCGGATCCGCGCCGGCATTGAGCAGGCCCACTACGTCAAGAAAGGCACGTGCTGA |
Gene | >Hirsu2|3475 ATGTCCGGTCCAAACCCCGAGCTCAGGCGGCAGGTCATCGCCATCTACAAAGGTCAGCAAGCCTCCGTCTCTGCC GCCCCGCCTCCGCCTCTCCCTCCTCTCTCCCTTGCCGTGGACAGGGCGAGAGCGTCGTCGGCCGCATGACGTCGT GGCTTGGCCCTCGCCCCCTTTGCCCAGCCCACAGCTTCCGAGGACGCGGCGCGGCGCGGGACAAGGTGCTGACGT CGTCGATGCCGCGAGCGACAGAGCTCCTCTACCTGGGGCGCGAATACCCTCTCGGCTTCGGCTACTTCCGCCCGC GCCTGCACAAGGCCTTCATCGCGCGTGCTGCCGAGCGCGACGAGGCCCGGATCCGCGCCGGCATTGAGCAGGCCC ACTACGTCAAGAAAGGCACGTGCTGA |