Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3465
Gene name
LocationContig_1903:2103..2538
Strand+
Gene length (bp)435
Transcript length (bp)435
Coding sequence length (bp)435
Protein length (aa) 145

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Extracellular Signal peptide 0.4779 0.3435 0.8235 0.1279 0.2571 0.1393 0.0882 0.064 0.1861 0.1488

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9356
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|3465 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3465
MSIWVKVSRVFASSMEAREPARRFGTRNWNLSDVSPTPMRTPPPPSLTGTHVWFRLLQAMQAWALAAAALSASRK
SPPPGRRTYRAGSNSPPIGPGCGQASRHSRCTGSVAWIPWPVRSENSCHERLKFRLEKAFRERLGVSFR*
Coding >Hirsu2|3465
ATGTCGATCTGGGTCAAAGTTTCGCGGGTATTCGCCAGCAGCATGGAGGCGAGAGAGCCTGCGCGCCGCTTCGGC
ACCAGAAACTGGAATCTGAGCGACGTTAGCCCGACTCCCATGCGAACACCTCCTCCGCCTTCACTCACCGGCACA
CATGTTTGGTTCCGCCTCTTGCAAGCCATGCAAGCTTGGGCCCTTGCTGCTGCTGCCCTATCAGCCTCGCGGAAA
TCGCCGCCACCAGGCCGGAGAACTTACAGAGCTGGTTCTAACAGCCCTCCCATTGGGCCGGGTTGTGGACAAGCC
TCCCGACACAGCCGCTGCACGGGGTCAGTCGCTTGGATCCCTTGGCCGGTTCGATCCGAGAATTCGTGTCATGAG
CGCCTGAAGTTTCGTCTCGAAAAGGCTTTTCGTGAGCGCCTGGGCGTGTCGTTCCGCTAG
Transcript >Hirsu2|3465
ATGTCGATCTGGGTCAAAGTTTCGCGGGTATTCGCCAGCAGCATGGAGGCGAGAGAGCCTGCGCGCCGCTTCGGC
ACCAGAAACTGGAATCTGAGCGACGTTAGCCCGACTCCCATGCGAACACCTCCTCCGCCTTCACTCACCGGCACA
CATGTTTGGTTCCGCCTCTTGCAAGCCATGCAAGCTTGGGCCCTTGCTGCTGCTGCCCTATCAGCCTCGCGGAAA
TCGCCGCCACCAGGCCGGAGAACTTACAGAGCTGGTTCTAACAGCCCTCCCATTGGGCCGGGTTGTGGACAAGCC
TCCCGACACAGCCGCTGCACGGGGTCAGTCGCTTGGATCCCTTGGCCGGTTCGATCCGAGAATTCGTGTCATGAG
CGCCTGAAGTTTCGTCTCGAAAAGGCTTTTCGTGAGCGCCTGGGCGTGTCGTTCCGCTAG
Gene >Hirsu2|3465
ATGTCGATCTGGGTCAAAGTTTCGCGGGTATTCGCCAGCAGCATGGAGGCGAGAGAGCCTGCGCGCCGCTTCGGC
ACCAGAAACTGGAATCTGAGCGACGTTAGCCCGACTCCCATGCGAACACCTCCTCCGCCTTCACTCACCGGCACA
CATGTTTGGTTCCGCCTCTTGCAAGCCATGCAAGCTTGGGCCCTTGCTGCTGCTGCCCTATCAGCCTCGCGGAAA
TCGCCGCCACCAGGCCGGAGAACTTACAGAGCTGGTTCTAACAGCCCTCCCATTGGGCCGGGTTGTGGACAAGCC
TCCCGACACAGCCGCTGCACGGGGTCAGTCGCTTGGATCCCTTGGCCGGTTCGATCCGAGAATTCGTGTCATGAG
CGCCTGAAGTTTCGTCTCGAAAAGGCTTTTCGTGAGCGCCTGGGCGTGTCGTTCCGCTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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