© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3457 |
| Gene name | |
| Location | Contig_190:29041..30256 |
| Strand | - |
| Gene length (bp) | 1215 |
| Transcript length (bp) | 1023 |
| Coding sequence length (bp) | 1023 |
| Protein length (aa) | 341 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06966 | DUF1295 | Protein of unknown function (DUF1295) | 2.9E-54 | 26 | 266 |
| PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 2.6E-06 | 144 | 209 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0006629 | lipid metabolic process | Yes |
| GO:0016491 | oxidoreductase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1462 | 0.1216 | 0.052 | 0.1906 | 0.1924 | 0.0118 | 0.6477 | 0.2958 | 0.4162 | 0.0293 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 32 | 22 |
| 2 | 41 | 58 | 17 |
| 3 | 68 | 90 | 22 |
| 4 | 103 | 125 | 22 |
| 5 | 140 | 162 | 22 |
| 6 | 191 | 213 | 22 |
| 7 | 223 | 245 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2435 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3457 MGTAHVLDDYYLAITAIVTVAYQLFFFAIAFTFKFDKLTDLAGGSNFAVLAILTLALSGHHHARQVVASLFLIVW AVRLSGFLFFRILRTGSDDRFDDKRDKFLPFLGFWLFQMLWVWTVSLPVTVLNSPNVTRYPQHAFGTGRDVAGIV LFALGFLMESVSDVQKYRFRNAHDGHAVCNRGLFALSRHPNYFGEIIIQFSIYMIAVSSAADGYVGGQAYKALYA TILGPFFLTILLMFVSGLPLSERPKAKSRFDKGNNWDEYKRWLDRTSILIPFPPQLYARMPVLLKRTLFLEFPMY VFDPAKHSDASHPPSRDARGARSASASGRSTRQSGEERLV* |
| Coding | >Hirsu2|3457 ATGGGGACCGCGCACGTGCTCGACGACTATTACCTGGCCATCACGGCCATCGTCACCGTCGCCTACCAGCTCTTC TTCTTCGCCATCGCCTTCACCTTCAAGTTCGACAAACTCACCGACCTCGCCGGCGGCTCCAACTTTGCCGTGCTG GCCATCCTCACGCTCGCCCTGTCCGGCCACCACCACGCGCGCCAGGTGGTGGCCTCGCTCTTCCTCATCGTCTGG GCCGTCCGCCTGTCCGGCTTCCTCTTCTTCCGCATCCTGCGCACCGGGTCCGACGACCGGTTCGACGACAAGCGC GACAAGTTCCTGCCCTTCCTCGGCTTCTGGCTCTTCCAGATGCTGTGGGTTTGGACCGTCTCCCTGCCCGTCACC GTCCTCAACTCGCCCAACGTGACGCGCTACCCGCAGCACGCCTTCGGCACCGGCAGGGACGTCGCCGGCATCGTC CTCTTCGCCCTCGGCTTCCTCATGGAGAGCGTGAGTGACGTGCAAAAGTACCGCTTCCGCAACGCCCACGACGGC CACGCCGTCTGCAACCGTGGCCTGTTCGCCCTGTCGCGACACCCCAACTACTTTGGTGAAATCATCATCCAGTTC TCCATCTACATGATCGCCGTCTCCTCCGCCGCCGACGGCTACGTCGGTGGTCAGGCCTACAAGGCCCTCTACGCC ACCATCCTCGGCCCCTTCTTCCTCACCATCCTCCTCATGTTCGTCTCGGGCCTGCCGCTGTCGGAACGGCCCAAG GCCAAGTCGCGCTTCGACAAGGGCAACAACTGGGACGAGTACAAGCGCTGGCTCGACCGCACCAGCATCCTCATC CCCTTCCCGCCCCAGCTCTACGCCCGGATGCCCGTCCTCCTCAAGCGCACCCTCTTCCTCGAGTTCCCCATGTAC GTCTTCGACCCGGCCAAGCACTCGGACGCGTCGCACCCGCCCTCCCGCGACGCACGGGGGGCCCGTTCCGCGTCG GCGAGCGGCCGCAGCACCAGGCAGAGCGGCGAGGAGAGGTTGGTCTGA |
| Transcript | >Hirsu2|3457 ATGGGGACCGCGCACGTGCTCGACGACTATTACCTGGCCATCACGGCCATCGTCACCGTCGCCTACCAGCTCTTC TTCTTCGCCATCGCCTTCACCTTCAAGTTCGACAAACTCACCGACCTCGCCGGCGGCTCCAACTTTGCCGTGCTG GCCATCCTCACGCTCGCCCTGTCCGGCCACCACCACGCGCGCCAGGTGGTGGCCTCGCTCTTCCTCATCGTCTGG GCCGTCCGCCTGTCCGGCTTCCTCTTCTTCCGCATCCTGCGCACCGGGTCCGACGACCGGTTCGACGACAAGCGC GACAAGTTCCTGCCCTTCCTCGGCTTCTGGCTCTTCCAGATGCTGTGGGTTTGGACCGTCTCCCTGCCCGTCACC GTCCTCAACTCGCCCAACGTGACGCGCTACCCGCAGCACGCCTTCGGCACCGGCAGGGACGTCGCCGGCATCGTC CTCTTCGCCCTCGGCTTCCTCATGGAGAGCGTGAGTGACGTGCAAAAGTACCGCTTCCGCAACGCCCACGACGGC CACGCCGTCTGCAACCGTGGCCTGTTCGCCCTGTCGCGACACCCCAACTACTTTGGTGAAATCATCATCCAGTTC TCCATCTACATGATCGCCGTCTCCTCCGCCGCCGACGGCTACGTCGGTGGTCAGGCCTACAAGGCCCTCTACGCC ACCATCCTCGGCCCCTTCTTCCTCACCATCCTCCTCATGTTCGTCTCGGGCCTGCCGCTGTCGGAACGGCCCAAG GCCAAGTCGCGCTTCGACAAGGGCAACAACTGGGACGAGTACAAGCGCTGGCTCGACCGCACCAGCATCCTCATC CCCTTCCCGCCCCAGCTCTACGCCCGGATGCCCGTCCTCCTCAAGCGCACCCTCTTCCTCGAGTTCCCCATGTAC GTCTTCGACCCGGCCAAGCACTCGGACGCGTCGCACCCGCCCTCCCGCGACGCACGGGGGGCCCGTTCCGCGTCG GCGAGCGGCCGCAGCACCAGGCAGAGCGGCGAGGAGAGGTTGGTCTGA |
| Gene | >Hirsu2|3457 ATGGGGACCGCGCACGTGCTCGACGACTATTACCTGGCCATCACGGCCATCGTCACCGTCGCCTACCAGCTCTTC TTCTTCGCCATCGCCTTCACCTTCAAGTTCGACAAACTCACCGGTAGGCTTCCCTCCCCTCCGTTCCAGCGGGAG AGGCGGATCTGACGGCGGCTCCGACGGCCAGACCTCGCCGGCGGCTCCAACTTTGCCGTGCTGGCCATCCTCACG CTCGCCCTGTCCGGCCACCACCACGCGCGCCAGGTGGTGGCCTCGCTCTTCCTCATCGTCTGGGCCGTCCGCCTG TCCGGCTTCCTCTTCTTCCGCATCCTGCGCACCGGGTCCGACGACCGGTTCGACGACAAGCGCGACAAGTTCCTG CCCTTCCTCGGCTTCTGGCTCTTCCAGATGCTGTGGGTTTGGACCGTCTCCCTGCCCGTCACCGTCCTCAACTCG CCCAACGTGACGCGCTACCCGCAGCACGCCTTCGGCACCGGCAGGGACGTCGCCGGCATCGTCCTCTTCGCCCTC GGCTTCCTCATGGAGAGCGTGAGTGACGTGCAAAAGTACCGCTTCCGCAACGCCCACGACGGCCACGCCGTCTGC AACCGTGGCCTGTTCGCCCTGTCGCGACACCCCAACTACTTTGGTGAAATCATCATCCAGTTCTGTACGCGCCGC CCCTCTCTCCTCGCCCCGTGATTCGACTCTCTCTCTCCCTCTCTCTCCGTCGTTGTTGTTTGTCGTAGTCGGCCC CCGGTTCGCTGACCAGGCCGGATGCGCGCCGCCGCCACGACAGCCATCTACATGATCGCCGTCTCCTCCGCCGCC GACGGCTACGTCGGTGGTCAGGCCTACAAGGCCCTCTACGCCACCATCCTCGGCCCCTTCTTCCTCACCATCCTC CTCATGTTCGTCTCGGGCCTGCCGCTGTCGGAACGGCCCAAGGCCAAGTCGCGCTTCGACAAGGGCAACAACTGG GACGAGTACAAGCGCTGGCTCGACCGCACCAGCATCCTCATCCCCTTCCCGCCCCAGCTCTACGCCCGGATGCCC GTCCTCCTCAAGCGCACCCTCTTCCTCGAGTTCCCCATGTACGTCTTCGACCCGGCCAAGCACTCGGACGCGTCG CACCCGCCCTCCCGCGACGCACGGGGGGCCCGTTCCGCGTCGGCGAGCGGCCGCAGCACCAGGCAGAGCGGCGAG GAGAGGTTGGTCTGA |