Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280

General Properties

Protein ID	Hirsu2|345
Gene name
Location	Contig_1066:6933..8004
Strand	+
Gene length (bp)	1071
Transcript length (bp)	819
Coding sequence length (bp)	819
Protein length (aa)	273

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain	8.4E-57	14	137
PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain	1.7E-48	140	267
PF04139	Rad9	Rad9	1.6E-07	26	230
PF02144	Rad1	Repair protein Rad1/Rec1/Rad17	2.7E-05	15	240

Swissprot hits

GO

GO Term	Description	Terminal node
GO:0030896	checkpoint clamp complex	Yes
GO:0003677	DNA binding	Yes
GO:0000077	DNA damage checkpoint	Yes
GO:0006275	regulation of DNA replication	Yes
GO:0005634	nucleus	Yes
GO:0065007	biological regulation	No
GO:0043229	intracellular organelle	No
GO:0097159	organic cyclic compound binding	No
GO:0006950	response to stress	No
GO:0003676	nucleic acid binding	No
GO:0019222	regulation of metabolic process	No
GO:0044428	nuclear part	No
GO:0050794	regulation of cellular process	No
GO:0005488	binding	No
GO:0050896	response to stimulus	No
GO:0048523	negative regulation of cellular process	No
GO:0000075	cell cycle checkpoint	No
GO:0008150	biological_process	No
GO:0009889	regulation of biosynthetic process	No
GO:0010556	regulation of macromolecule biosynthetic process	No
GO:0051052	regulation of DNA metabolic process	No
GO:0043226	organelle	No
GO:0003674	molecular_function	No
GO:0044422	organelle part	No
GO:0005575	cellular_component	No
GO:0060255	regulation of macromolecule metabolic process	No
GO:0050789	regulation of biological process	No
GO:0044446	intracellular organelle part	No
GO:0043227	membrane-bounded organelle	No
GO:0009987	cellular process	No
GO:1901363	heterocyclic compound binding	No
GO:0032991	protein-containing complex	No
GO:0044424	intracellular part	No
GO:0051171	regulation of nitrogen compound metabolic process	No
GO:0051716	cellular response to stimulus	No
GO:0044427	chromosomal part	No
GO:0045786	negative regulation of cell cycle	No
GO:0044454	nuclear chromosome part	No
GO:0031323	regulation of cellular metabolic process	No
GO:0051726	regulation of cell cycle	No
GO:0044464	cell part	No
GO:0043231	intracellular membrane-bounded organelle	No
GO:0019219	regulation of nucleobase-containing compound metabolic process	No
GO:0080090	regulation of primary metabolic process	No
GO:2000112	regulation of cellular macromolecule biosynthetic process	No
GO:0006974	cellular response to DNA damage stimulus	No
GO:0048519	negative regulation of biological process	No
GO:0031570	DNA integrity checkpoint	No
GO:0033554	cellular response to stress	No
GO:0031326	regulation of cellular biosynthetic process	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 32	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>Hirsu2|345 LSHTVLPKEQASKMLEARLEQANILKKVVDAIKELVQDCNFDCNDSGIALQAMDNSHVALVSMMLKAEGFSPYRC DRNIALGVNLTSLTKVLRAAQNEDILTLKADDAPDVLNLVFESSENDRISEYDLKLMDIDQEHLGIPETEYAATI AMPAAEFRRICTDLAAMSESVNIEASKDGVKFSCNGDIGMGSVTLRSHTNVEKPELNVDIELSEPVCLTFSLKYL VNFCKAASLSSQVKICLSSEVPLLVEYNLSGSSFLRFYLAPKIGDDE*
Coding	>Hirsu2|345 CTGTCTCACACAGTTCTCCCAAAGGAGCAAGCCAGCAAGATGTTGGAAGCACGGCTCGAGCAGGCCAATATCCTT AAGAAGGTGGTGGATGCCATCAAGGAGCTCGTCCAGGACTGCAACTTCGACTGCAATGACTCGGGCATCGCGCTG CAGGCCATGGACAACTCGCACGTGGCGCTGGTGTCGATGATGCTCAAGGCCGAGGGCTTCTCGCCCTACCGCTGC GACCGCAACATCGCGCTCGGCGTCAACCTGACGTCCCTGACCAAGGTGCTCCGCGCGGCCCAGAACGAGGACATC CTGACGCTCAAGGCCGACGACGCGCCCGACGTGCTGAACCTGGTCTTTGAGAGCAGCGAAAACGACCGGATCAGC GAGTACGACCTCAAGCTCATGGACATTGACCAGGAGCACCTGGGCATCCCCGAGACGGAGTACGCGGCCACGATC GCCATGCCGGCCGCCGAGTTTCGGAGGATCTGCACAGACCTGGCTGCCATGTCGGAATCAGTCAACATCGAGGCA TCCAAGGACGGTGTCAAGTTCTCGTGCAACGGCGACATCGGCATGGGCTCCGTCACGCTGCGCAGCCACACCAAC GTCGAGAAGCCGGAGCTCAACGTCGACATTGAGCTGTCGGAGCCCGTCTGCCTGACCTTCTCCCTCAAGTACCTC GTCAACTTCTGCAAGGCCGCCAGCCTGTCCAGCCAGGTCAAGATCTGCCTGTCGAGCGAGGTGCCGCTGCTGGTC GAGTACAACCTGTCGGGCAGCAGCTTTCTGCGCTTCTACCTGGCGCCAAAGATTGGCGACGACGAGTAA
Transcript	>Hirsu2|345 CTGTCTCACACAGTTCTCCCAAAGGAGCAAGCCAGCAAGATGTTGGAAGCACGGCTCGAGCAGGCCAATATCCTT AAGAAGGTGGTGGATGCCATCAAGGAGCTCGTCCAGGACTGCAACTTCGACTGCAATGACTCGGGCATCGCGCTG CAGGCCATGGACAACTCGCACGTGGCGCTGGTGTCGATGATGCTCAAGGCCGAGGGCTTCTCGCCCTACCGCTGC GACCGCAACATCGCGCTCGGCGTCAACCTGACGTCCCTGACCAAGGTGCTCCGCGCGGCCCAGAACGAGGACATC CTGACGCTCAAGGCCGACGACGCGCCCGACGTGCTGAACCTGGTCTTTGAGAGCAGCGAAAACGACCGGATCAGC GAGTACGACCTCAAGCTCATGGACATTGACCAGGAGCACCTGGGCATCCCCGAGACGGAGTACGCGGCCACGATC GCCATGCCGGCCGCCGAGTTTCGGAGGATCTGCACAGACCTGGCTGCCATGTCGGAATCAGTCAACATCGAGGCA TCCAAGGACGGTGTCAAGTTCTCGTGCAACGGCGACATCGGCATGGGCTCCGTCACGCTGCGCAGCCACACCAAC GTCGAGAAGCCGGAGCTCAACGTCGACATTGAGCTGTCGGAGCCCGTCTGCCTGACCTTCTCCCTCAAGTACCTC GTCAACTTCTGCAAGGCCGCCAGCCTGTCCAGCCAGGTCAAGATCTGCCTGTCGAGCGAGGTGCCGCTGCTGGTC GAGTACAACCTGTCGGGCAGCAGCTTTCTGCGCTTCTACCTGGCGCCAAAGATTGGCGACGACGAGTAA
Gene	>Hirsu2|345 CTGTCTCACACAGTTCTCCCAAAGGAGCAAGCCAGCAGTACGTCCATCCTTGCCTGCGCCTCTGCCCGAGACGGG CGCGGCTCGTCGTCCAGTCTAACGCAAGGCCGCAGAGATGTTGGAAGCACGGCTCGAGCAGGCCAATATCCTTAA GAAGGTACGCCCCGCCGACCGCTGCGGGCGCGAGACGAGACGCTGACGCGGTGCAGGTGGTGGATGCCATCAAGG AGCTCGTCCAGGACTGCAACTTCGACTGCAATGACTCGGGCATCGCGCTGCAGGCCATGGACAACTCGCACGTGG CGCTGGTGTCGATGATGCTCAAGGCCGAGGGCTTCTCGCCCTACCGCTGCGACCGCAACATCGCGCTCGGCGTCA ACCTGACGTCCCTGACCAAGGTGCTCCGCGCGGCCCAGAACGAGGACATCCTGACGCTCAAGGCCGACGACGCGC CCGACGTGCTGAACCTGGTCTTTGAGAGCAGCGAAAACGACCGGATCAGCGAGTACGACCTCAAGCTCATGGACA TTGACCAGGAGCACCTGGGCATCCCCGAGACGGAGTACGCGGCCACGATCGCCATGCCGGCCGCCGAGTTTCGGA GGATCTGCACAGACCTGGCTGCCATGTCGGAATCAGGTGCGTCGAGCTCTCCTCGCCCCGTGAAGGCGGCCTTGC TGACATGTGACGTCGCCGGCCTGCAGTCAACATCGAGGCATCCAAGGACGGTGTCAAGTTCTCGTGCAACGGCGA CATCGGCATGGGCTCCGTCACGCTGCGCAGCCACACCAACGTCGAGAAGCCGGAGCTCAACGTCGACATTGAGCT GTCGGAGCCCGTCTGCCTGACCTTCTCCCTCAAGTACCTCGTCAACTTCTGCAAGGCCGCCAGCCTGTCCAGCCA GGTCAAGATCTGCCTGTCGAGCGAGGTGCCGCTGCTGGTCGAGTACAACCTGTCGGGCAGCAGCTTTCTGCGCTT CTACCTGGCGCCAAAGGTGCGCTGCCGACTCCCCCGTTTTGCATTTGCTTGTGCCAACTGACGCTCGAACCTGCA CAGATTGGCGACGACGAGTAA