© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3448 |
| Gene name | |
| Location | Contig_190:745..2833 |
| Strand | - |
| Gene length (bp) | 2088 |
| Transcript length (bp) | 1917 |
| Coding sequence length (bp) | 1917 |
| Protein length (aa) | 639 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02582 | DUF155 | RMND1/Sif2-Sif3/Mrx10, DUF155 | 9.4E-53 | 315 | 497 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09877|SIF3_SCHPO | Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 | 96 | 521 | 1.0E-86 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 313 | 553 | 3.0E-84 |
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 89 | 541 | 4.0E-51 |
| sp|O74446|SIF2_SCHPO | Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 | 312 | 541 | 8.0E-46 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 5 | 260 | 3.0E-27 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q09877|SIF3_SCHPO | Sad1-interacting factor 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif3 PE=1 SV=2 | 96 | 521 | 1.0E-86 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 313 | 553 | 3.0E-84 |
| sp|Q03441|RMD1_YEAST | Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD1 PE=1 SV=1 | 89 | 541 | 4.0E-51 |
| sp|O74446|SIF2_SCHPO | Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sif2 PE=1 SV=2 | 312 | 541 | 8.0E-46 |
| sp|P43620|RMD8_YEAST | Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RMD8 PE=1 SV=1 | 5 | 260 | 3.0E-27 |
| sp|Q8CI78|RMND1_MOUSE | Required for meiotic nuclear division protein 1 homolog OS=Mus musculus GN=Rmnd1 PE=1 SV=1 | 315 | 541 | 7.0E-20 |
| sp|Q9NWS8|RMND1_HUMAN | Required for meiotic nuclear division protein 1 homolog OS=Homo sapiens GN=RMND1 PE=1 SV=2 | 315 | 541 | 3.0E-19 |
| sp|Q5RAR5|RMND1_PONAB | Required for meiotic nuclear division protein 1 homolog OS=Pongo abelii GN=RMND1 PE=2 SV=1 | 315 | 541 | 3.0E-18 |
| sp|Q05648|MRX10_YEAST | MIOREX complex component 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRX10 PE=1 SV=1 | 315 | 530 | 4.0E-15 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.0807 | 0.0404 | 0.0245 | 0.4762 | 0.1029 | 0.0257 | 0.4685 | 0.2072 | 0.5828 | 0.0676 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 521 | 543 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2430 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3448 MSSGKQRPSVLVTDSRERTNQRKAPRRQDTSSAAAGRTPMRFMTVDNVLQYNSQIPSGQPRGPPIPTQRPHPPAL TGRRVSAGGLPNVQSRTGQSIPSRTTKISEKLVLLPETDQDGEDAEEEVESESVLSRRLQEEQSRPLKDEELDVL KKRGGIRGKSFAERLPKLQRKDRVSRLTAYCTAQAFKIRATSEFLRAKHEAKTKLYDDCLYVIYALPLLNGTDGY RVRGRPMLKTPGTGKTMLDLEIERSERRDHHEGYFEDDAYTTPESFEGAGRGVASFGDPSPDDETQRDNEDGIPS QINRLAPDAKNFAEMFVFSYGVVVFWNFTEHQEKDILADLTFADAEDGISLLTRPFEQDNFETEEFHFEYSADVK RPRVFNDMITLLPRSDHMIKLTISHAIAQSTKLCFFEERMSETMLDAQHVPKTLALTGQLNMTRTEIVKILGRLF KSRVDINLSSNMLDVPNFFWDSEPTLHPLYVAVREYLEIDPRIKVLNERCRVFLDLAEILSDSVNDAKMSAITWT VIVLILVSILVTVTEVGLRFVMLSKNSGKAPGAASSAVRWASPAAAAPEVVLVPAPDKQVPLGRQASPGAGAGGL EELAAALGLRGNASMEDIRQGILDLRRDGSTGRPERAA* |
| Coding | >Hirsu2|3448 ATGTCGTCGGGAAAACAGCGACCGTCGGTGCTTGTCACCGACTCGAGGGAAAGGACAAACCAGAGAAAGGCCCCG CGGCGCCAGGACACGTCGTCCGCGGCTGCTGGCCGGACGCCTATGCGATTCATGACGGTCGACAACGTGCTTCAA TACAACTCGCAGATCCCGTCCGGCCAGCCGCGAGGGCCGCCGATACCGACCCAGAGGCCGCATCCACCGGCCCTG ACCGGCAGGCGTGTGTCGGCCGGCGGCCTGCCCAACGTCCAGTCGCGCACGGGACAGTCGATACCGTCGAGGACG ACGAAAATCAGCGAAAAGCTAGTGCTGCTGCCCGAGACGGATCAAGACGGCGAGGATGCCGAGGAGGAGGTCGAG AGCGAGTCTGTCCTCTCCAGGAGGCTACAGGAGGAGCAGAGTCGACCGTTGAAGGACGAGGAGCTGGATGTGCTC AAAAAGAGAGGCGGTATCCGGGGCAAGAGCTTCGCCGAGAGATTGCCCAAGCTGCAGAGGAAGGACAGGGTGAGC CGGCTGACGGCCTACTGCACGGCTCAAGCCTTCAAGATCCGCGCCACGTCGGAATTCTTGCGGGCCAAGCACGAG GCCAAGACGAAGCTCTACGACGACTGCCTCTACGTCATCTACGCCCTGCCCCTGCTCAACGGCACGGACGGCTAC CGCGTCCGCGGGCGGCCCATGCTCAAGACGCCGGGGACGGGCAAGACGATGCTTGACCTGGAGATTGAGCGGAGC GAACGGCGTGACCACCACGAGGGGTACTTTGAAGACGACGCCTACACGACGCCCGAGAGCTTCGAGGGGGCGGGC CGCGGGGTGGCGTCCTTCGGCGACCCATCGCCCGACGACGAAACGCAGCGAGACAATGAGGACGGGATACCGTCC CAGATCAACCGGCTGGCCCCCGACGCCAAGAACTTTGCCGAGATGTTCGTCTTCTCGTACGGCGTCGTCGTCTTC TGGAACTTTACGGAGCACCAAGAAAAGGACATCTTGGCGGACCTCACGTTTGCGGATGCCGAGGACGGCATCAGC CTGCTGACCAGGCCCTTTGAGCAGGACAACTTCGAGACGGAGGAGTTTCACTTCGAGTACAGCGCCGACGTCAAG CGGCCGCGCGTCTTCAACGACATGATCACCCTGCTGCCGCGGTCGGACCACATGATCAAGCTGACCATCAGCCAT GCCATCGCGCAGAGCACCAAGCTGTGCTTCTTCGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAGCACGTG CCCAAGACGCTGGCGCTGACGGGCCAGCTCAACATGACGAGGACGGAGATTGTCAAGATCTTGGGCAGGCTGTTC AAGAGCCGCGTCGACATCAACCTCTCTTCCAACATGCTCGACGTGCCCAACTTCTTCTGGGACTCGGAGCCGACA CTGCACCCGCTGTACGTGGCGGTGCGCGAGTATCTGGAGATCGACCCGCGCATCAAGGTGCTCAACGAGCGCTGC CGCGTGTTCCTCGACCTGGCCGAGATACTGTCGGACTCGGTCAATGACGCCAAGATGAGTGCCATAACATGGACC GTCATTGTCCTGATCCTCGTCAGCATCCTGGTCACCGTGACCGAGGTCGGGCTGCGATTTGTCATGCTGAGCAAG AACTCGGGCAAGGCGCCGGGAGCGGCGTCGTCGGCGGTGAGGTGGGCCAGCCCGGCGGCGGCGGCCCCCGAGGTG GTGCTGGTGCCGGCGCCGGACAAGCAGGTACCGCTCGGGCGACAGGCTTCGCCGGGGGCCGGGGCCGGCGGGCTG GAGGAGCTCGCGGCGGCGCTCGGGCTGCGGGGCAACGCCAGCATGGAGGACATCAGGCAAGGCATCCTGGATTTG AGACGAGACGGCTCGACTGGCCGTCCGGAGCGCGCCGCCTAG |
| Transcript | >Hirsu2|3448 ATGTCGTCGGGAAAACAGCGACCGTCGGTGCTTGTCACCGACTCGAGGGAAAGGACAAACCAGAGAAAGGCCCCG CGGCGCCAGGACACGTCGTCCGCGGCTGCTGGCCGGACGCCTATGCGATTCATGACGGTCGACAACGTGCTTCAA TACAACTCGCAGATCCCGTCCGGCCAGCCGCGAGGGCCGCCGATACCGACCCAGAGGCCGCATCCACCGGCCCTG ACCGGCAGGCGTGTGTCGGCCGGCGGCCTGCCCAACGTCCAGTCGCGCACGGGACAGTCGATACCGTCGAGGACG ACGAAAATCAGCGAAAAGCTAGTGCTGCTGCCCGAGACGGATCAAGACGGCGAGGATGCCGAGGAGGAGGTCGAG AGCGAGTCTGTCCTCTCCAGGAGGCTACAGGAGGAGCAGAGTCGACCGTTGAAGGACGAGGAGCTGGATGTGCTC AAAAAGAGAGGCGGTATCCGGGGCAAGAGCTTCGCCGAGAGATTGCCCAAGCTGCAGAGGAAGGACAGGGTGAGC CGGCTGACGGCCTACTGCACGGCTCAAGCCTTCAAGATCCGCGCCACGTCGGAATTCTTGCGGGCCAAGCACGAG GCCAAGACGAAGCTCTACGACGACTGCCTCTACGTCATCTACGCCCTGCCCCTGCTCAACGGCACGGACGGCTAC CGCGTCCGCGGGCGGCCCATGCTCAAGACGCCGGGGACGGGCAAGACGATGCTTGACCTGGAGATTGAGCGGAGC GAACGGCGTGACCACCACGAGGGGTACTTTGAAGACGACGCCTACACGACGCCCGAGAGCTTCGAGGGGGCGGGC CGCGGGGTGGCGTCCTTCGGCGACCCATCGCCCGACGACGAAACGCAGCGAGACAATGAGGACGGGATACCGTCC CAGATCAACCGGCTGGCCCCCGACGCCAAGAACTTTGCCGAGATGTTCGTCTTCTCGTACGGCGTCGTCGTCTTC TGGAACTTTACGGAGCACCAAGAAAAGGACATCTTGGCGGACCTCACGTTTGCGGATGCCGAGGACGGCATCAGC CTGCTGACCAGGCCCTTTGAGCAGGACAACTTCGAGACGGAGGAGTTTCACTTCGAGTACAGCGCCGACGTCAAG CGGCCGCGCGTCTTCAACGACATGATCACCCTGCTGCCGCGGTCGGACCACATGATCAAGCTGACCATCAGCCAT GCCATCGCGCAGAGCACCAAGCTGTGCTTCTTCGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAGCACGTG CCCAAGACGCTGGCGCTGACGGGCCAGCTCAACATGACGAGGACGGAGATTGTCAAGATCTTGGGCAGGCTGTTC AAGAGCCGCGTCGACATCAACCTCTCTTCCAACATGCTCGACGTGCCCAACTTCTTCTGGGACTCGGAGCCGACA CTGCACCCGCTGTACGTGGCGGTGCGCGAGTATCTGGAGATCGACCCGCGCATCAAGGTGCTCAACGAGCGCTGC CGCGTGTTCCTCGACCTGGCCGAGATACTGTCGGACTCGGTCAATGACGCCAAGATGAGTGCCATAACATGGACC GTCATTGTCCTGATCCTCGTCAGCATCCTGGTCACCGTGACCGAGGTCGGGCTGCGATTTGTCATGCTGAGCAAG AACTCGGGCAAGGCGCCGGGAGCGGCGTCGTCGGCGGTGAGGTGGGCCAGCCCGGCGGCGGCGGCCCCCGAGGTG GTGCTGGTGCCGGCGCCGGACAAGCAGGTACCGCTCGGGCGACAGGCTTCGCCGGGGGCCGGGGCCGGCGGGCTG GAGGAGCTCGCGGCGGCGCTCGGGCTGCGGGGCAACGCCAGCATGGAGGACATCAGGCAAGGCATCCTGGATTTG AGACGAGACGGCTCGACTGGCCGTCCGGAGCGCGCCGCCTAG |
| Gene | >Hirsu2|3448 ATGTCGTCGGGAAAACAGCGACCGTCGGTGCTTGTACGGCTCCCCAGGCCCCAATGCTGTCGCAGCTTGCTCAGT CGCTAACGCAGGCGCGCATAGGTCACCGACTCGAGGGAAAGGACAAACCAGAGAAAGGCCCCGCGGCGCCAGGAC ACGTCGTCCGCGGCTGCTGGCCGGACGCCTATGCGATTCATGACGGTCGACAACGTGCTTCAATACAACTCGCAG ATCCCGTCCGGCCAGCCGCGAGGGCCGCCGATACCGACCCAGAGGCCGCATCCACCGGCCCTGACCGGCAGGCGT GTGTCGGCCGGCGGCCTGCCCAACGTCCAGTCGCGCACGGGACAGTCGATACCGTCGAGGACGACGAAAATCAGC GAAAAGCTAGTGCTGCTGCCCGAGACGGATCAAGACGGCGAGGATGCCGAGGAGGAGGTCGAGAGCGAGTCTGTC CTCTCCAGGAGGCTACAGGAGGAGCAGAGTCGACCGTTGAAGGACGAGGAGCTGGATGTGCTCAAAAAGAGAGGC GGTATCCGGGGCAAGAGCTTCGCCGAGAGATTGCCCAAGCTGCAGAGGAAGGACAGGGTGAGCCGGCTGACGGCC TACTGCACGGCTCAAGCCTTCAAGATCCGCGCCACGTCGGAATTCTTGCGGGCCAAGCACGAGGCCAAGACGAAG CTCTACGACGACTGCCTCTACGTCATCTACGCCCTGCCCCTGCTCAACGGCACGGACGGCTACCGCGTCCGCGGG CGGCCCATGCTCAAGACGCCGGGGACGGGCAAGACGATGCTTGACCTGGAGATTGAGCGGAGCGAACGGCGTGAC CACCACGAGGGGTACTTTGAAGACGACGCCTACACGACGCCCGAGAGCTTCGAGGGGGCGGGCCGCGGGGTGGCG TCCTTCGGCGACCCATCGCCCGACGACGAAACGCAGCGAGACAATGAGGACGGGATACCGTCCCAGATCAACCGG CTGGCCCCCGACGCCAAGAACTTTGCCGAGATGTTCGTCTTCTCGTACGGCGTCGTCGTCTTCTGGAACTTTACG GAGCACCAAGAAAAGGACATCTTGGCGGACCTCACGTTTGCGGATGCCGAGGACGGCATCAGCCTGCTGACCAGG CCCTTTGAGCAGGACAACTTCGAGACGGAGGAGTTTCACTTCGAGTACAGCGCCGACGTCAAGCGGCCGCGCGTC TTCAACGACATGATCACCCTGCTGCCGCGGTCGGACCACATGATCAAGCTGACCATCAGCCATGCCATCGCGCAG AGCACCAAGCTGTGCTTCTTCGAGGAGCGGATGAGCGAGACGATGCTGGACGCGCAGCACGTGCCCAAGACGCTG GCGCTGACGGGCCAGCTCAACATGACGAGGACGGAGATTGTCAAGATCTTGGGCAGGCTGTTCAAGAGCCGCGTC GACATCAACCTCTGTAAGGTCCCACCACCCCCGTTTCTCGGGCGTCTTGAACAGAGGTCTGCCGAGAGCCCAGGT TGGTGGGGGGAGACGGACAAGACGGATGCTGACCAGTCCGGCCCAGCTTCCAACATGCTCGACGTGCCCAACTTC TTCTGGGACTCGGAGCCGACACTGCACCCGCTGTACGTGGCGGTGCGCGAGTATCTGGAGATCGACCCGCGCATC AAGGTGCTCAACGAGCGCTGCCGCGTGTTCCTCGACCTGGCCGAGATACTGTCGGACTCGGTCAATGACGCCAAG ATGAGTGCCATAACATGGACCGTCATTGTCCTGATCCTCGTCAGCATCCTGGTCACCGTGACCGAGGTCGGGCTG CGATTTGTCATGCTGAGCAAGAACTCGGGCAAGGCGCCGGGAGCGGCGTCGTCGGCGGTGAGGTGGGCCAGCCCG GCGGCGGCGGCCCCCGAGGTGGTGCTGGTGCCGGCGCCGGACAAGCAGGTACCGCTCGGGCGACAGGCTTCGCCG GGGGCCGGGGCCGGCGGGCTGGAGGAGCTCGCGGCGGCGCTCGGGCTGCGGGGCAACGCCAGCATGGAGGACATC AGGCAAGGCATCCTGGATTTGAGACGAGACGGCTCGACTGGCCGTCCGGAGCGCGCCGCCTAG |