Protein ID | Hirsu2|3445 |
Gene name | |
Location | Contig_19:63178..63853 |
Strand | - |
Gene length (bp) | 675 |
Transcript length (bp) | 675 |
Coding sequence length (bp) | 675 |
Protein length (aa) | 225 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06058 | DCP1 | Dcp1-like decapping family | 3.7E-34 | 50 | 172 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9P805|DCP1_SCHPO | mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1 | 52 | 180 | 8.0E-15 |
sp|Q9SJF3|DCP1_ARATH | mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2 | 52 | 167 | 1.0E-13 |
sp|Q8IZD4|DCP1B_HUMAN | mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2 | 51 | 170 | 1.0E-10 |
sp|Q5R413|DCP1B_PONAB | mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1 | 51 | 170 | 1.0E-10 |
sp|Q3U564|DCP1B_MOUSE | mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=1 SV=1 | 46 | 170 | 1.0E-10 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q9P805|DCP1_SCHPO | mRNA-decapping enzyme subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dcp1 PE=1 SV=1 | 52 | 180 | 8.0E-15 |
sp|Q9SJF3|DCP1_ARATH | mRNA-decapping enzyme-like protein OS=Arabidopsis thaliana GN=At1g08370 PE=1 SV=2 | 52 | 167 | 1.0E-13 |
sp|Q8IZD4|DCP1B_HUMAN | mRNA-decapping enzyme 1B OS=Homo sapiens GN=DCP1B PE=1 SV=2 | 51 | 170 | 1.0E-10 |
sp|Q5R413|DCP1B_PONAB | mRNA-decapping enzyme 1B OS=Pongo abelii GN=DCP1B PE=2 SV=1 | 51 | 170 | 1.0E-10 |
sp|Q3U564|DCP1B_MOUSE | mRNA-decapping enzyme 1B OS=Mus musculus GN=Dcp1b PE=1 SV=1 | 46 | 170 | 1.0E-10 |
sp|Q3SZL6|DCP1B_BOVIN | mRNA-decapping enzyme 1B OS=Bos taurus GN=DCP1B PE=2 SV=1 | 51 | 170 | 8.0E-10 |
sp|Q91YD3|DCP1A_MOUSE | mRNA-decapping enzyme 1A OS=Mus musculus GN=Dcp1a PE=1 SV=1 | 47 | 170 | 7.0E-09 |
sp|Q9NPI6|DCP1A_HUMAN | mRNA-decapping enzyme 1A OS=Homo sapiens GN=DCP1A PE=1 SV=2 | 47 | 170 | 9.0E-09 |
GO Term | Description | Terminal node |
---|---|---|
GO:0043085 | positive regulation of catalytic activity | Yes |
GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | Yes |
GO:0008047 | enzyme activator activity | Yes |
GO:0009056 | catabolic process | No |
GO:0044248 | cellular catabolic process | No |
GO:0008152 | metabolic process | No |
GO:0009987 | cellular process | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0044270 | cellular nitrogen compound catabolic process | No |
GO:0006401 | RNA catabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0000956 | nuclear-transcribed mRNA catabolic process | No |
GO:0010605 | negative regulation of macromolecule metabolic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0019222 | regulation of metabolic process | No |
GO:1901361 | organic cyclic compound catabolic process | No |
GO:0034655 | nucleobase-containing compound catabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0010629 | negative regulation of gene expression | No |
GO:0065009 | regulation of molecular function | No |
GO:0046700 | heterocycle catabolic process | No |
GO:0010468 | regulation of gene expression | No |
GO:0098772 | molecular function regulator activity | No |
GO:0008150 | biological_process | No |
GO:0009892 | negative regulation of metabolic process | No |
GO:0110156 | methylguanosine-cap decapping | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0060255 | regulation of macromolecule metabolic process | No |
GO:0019439 | aromatic compound catabolic process | No |
GO:0016071 | mRNA metabolic process | No |
GO:0050789 | regulation of biological process | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0050790 | regulation of catalytic activity | No |
GO:0044237 | cellular metabolic process | No |
GO:0030234 | enzyme regulator activity | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0006402 | mRNA catabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0044093 | positive regulation of molecular function | No |
GO:0009057 | macromolecule catabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0065007 | biological regulation | No |
GO:0110154 | RNA decapping | No |
GO:0048519 | negative regulation of biological process | No |
GO:0044265 | cellular macromolecule catabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:1901575 | organic substance catabolic process | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | Nuclear localization signal | 0.6625 | 0.4442 | 0.14 | 0.0402 | 0.058 | 0.003 | 0.0732 | 0.0892 | 0.1273 | 0.0176 |
Orthofinder run ID | 4 |
Orthogroup | 2428 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3445 MSRAAAPRKAPRHSRQPSNLIPAVSDYDSDAAAAIRASASYAPPPPRTNTELNLSVLQRYLPSIQSILSIAANAV VYTFAAASESWDKSGIEGTLFVCAQSSLPDDASHRPRACVFVLNRRSLDNLVVDLARVTHVEIMDELIILRVEGD REEGEKVLGIWIHNDKDETRETNGAVIQESWKAVRSGGTVEEQGPEAGPAMQAIGRRLSLSDLFGKPNDANAAP* |
Coding | >Hirsu2|3445 ATGAGTCGAGCAGCAGCACCGCGCAAGGCGCCGCGCCACAGCCGCCAGCCCTCCAACCTCATCCCGGCCGTGTCC GACTACGACTCCGATGCCGCGGCCGCGATCAGGGCCTCCGCCTCGTACGCCCCGCCGCCGCCTCGTACCAACACC GAGCTCAACCTCTCCGTCCTGCAGCGGTACCTGCCCTCCATCCAGAGCATCCTCAGCATCGCCGCCAACGCCGTC GTCTATACCTTCGCCGCCGCCTCCGAGAGCTGGGACAAGTCGGGCATCGAGGGAACCTTGTTTGTCTGTGCGCAG AGCTCGCTGCCCGACGACGCAAGCCACCGGCCCCGCGCATGCGTCTTCGTTCTCAACCGCCGCTCTCTGGACAAC CTGGTCGTCGACCTGGCCAGGGTCACTCACGTCGAGATCATGGACGAGCTCATCATCCTGCGCGTCGAAGGCGAC CGGGAGGAAGGGGAAAAGGTGCTTGGCATCTGGATACACAACGACAAGGACGAGACGCGCGAGACCAACGGCGCC GTCATCCAAGAGAGCTGGAAAGCTGTCAGGTCGGGCGGCACGGTCGAGGAGCAAGGCCCTGAGGCGGGACCAGCC ATGCAGGCTATTGGCAGGAGGCTGTCCCTCAGTGACTTGTTTGGGAAGCCAAACGACGCAAACGCGGCCCCATGA |
Transcript | >Hirsu2|3445 ATGAGTCGAGCAGCAGCACCGCGCAAGGCGCCGCGCCACAGCCGCCAGCCCTCCAACCTCATCCCGGCCGTGTCC GACTACGACTCCGATGCCGCGGCCGCGATCAGGGCCTCCGCCTCGTACGCCCCGCCGCCGCCTCGTACCAACACC GAGCTCAACCTCTCCGTCCTGCAGCGGTACCTGCCCTCCATCCAGAGCATCCTCAGCATCGCCGCCAACGCCGTC GTCTATACCTTCGCCGCCGCCTCCGAGAGCTGGGACAAGTCGGGCATCGAGGGAACCTTGTTTGTCTGTGCGCAG AGCTCGCTGCCCGACGACGCAAGCCACCGGCCCCGCGCATGCGTCTTCGTTCTCAACCGCCGCTCTCTGGACAAC CTGGTCGTCGACCTGGCCAGGGTCACTCACGTCGAGATCATGGACGAGCTCATCATCCTGCGCGTCGAAGGCGAC CGGGAGGAAGGGGAAAAGGTGCTTGGCATCTGGATACACAACGACAAGGACGAGACGCGCGAGACCAACGGCGCC GTCATCCAAGAGAGCTGGAAAGCTGTCAGGTCGGGCGGCACGGTCGAGGAGCAAGGCCCTGAGGCGGGACCAGCC ATGCAGGCTATTGGCAGGAGGCTGTCCCTCAGTGACTTGTTTGGGAAGCCAAACGACGCAAACGCGGCCCCATGA |
Gene | >Hirsu2|3445 ATGAGTCGAGCAGCAGCACCGCGCAAGGCGCCGCGCCACAGCCGCCAGCCCTCCAACCTCATCCCGGCCGTGTCC GACTACGACTCCGATGCCGCGGCCGCGATCAGGGCCTCCGCCTCGTACGCCCCGCCGCCGCCTCGTACCAACACC GAGCTCAACCTCTCCGTCCTGCAGCGGTACCTGCCCTCCATCCAGAGCATCCTCAGCATCGCCGCCAACGCCGTC GTCTATACCTTCGCCGCCGCCTCCGAGAGCTGGGACAAGTCGGGCATCGAGGGAACCTTGTTTGTCTGTGCGCAG AGCTCGCTGCCCGACGACGCAAGCCACCGGCCCCGCGCATGCGTCTTCGTTCTCAACCGCCGCTCTCTGGACAAC CTGGTCGTCGACCTGGCCAGGGTCACTCACGTCGAGATCATGGACGAGCTCATCATCCTGCGCGTCGAAGGCGAC CGGGAGGAAGGGGAAAAGGTGCTTGGCATCTGGATACACAACGACAAGGACGAGACGCGCGAGACCAACGGCGCC GTCATCCAAGAGAGCTGGAAAGCTGTCAGGTCGGGCGGCACGGTCGAGGAGCAAGGCCCTGAGGCGGGACCAGCC ATGCAGGCTATTGGCAGGAGGCTGTCCCTCAGTGACTTGTTTGGGAAGCCAAACGACGCAAACGCGGCCCCATGA |