© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3436 |
| Gene name | |
| Location | Contig_19:43370..44276 |
| Strand | - |
| Gene length (bp) | 906 |
| Transcript length (bp) | 906 |
| Coding sequence length (bp) | 906 |
| Protein length (aa) | 302 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02179 | BAG | BAG domain | 8.8E-19 | 217 | 297 |
| PF00240 | ubiquitin | Ubiquitin family | 1.3E-05 | 109 | 144 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0051087 | chaperone binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | Nuclear localization signal | 0.5552 | 0.4634 | 0.0686 | 0.0597 | 0.1479 | 0.009 | 0.1429 | 0.0495 | 0.1687 | 0.0241 |
| Orthofinder run ID | 4 |
| Orthogroup | 2421 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3436 MSRYGWSLRGNQGRPYGAVPGVPAVTDDDFSYITSQDLDDAPLGASGSRHHPRSQSAAPPAPEDDVLIIKNKGIT YPAHFPAYSIGDGKLHVQDVRDRVGLMMDLPDRAAARLKLLYKGKQLKEPNSPVRDYGVKNKSELMAVLPDVGDG SSASDEEMVIVGDPPRDDSKSRRRKKRKPKRAAGKDDGDSASSARDSNSHSKSPPPPAVSSGPMKEIDDLAADFR AKWLPLCLKFTASPPADPKAREEEHRRLTESLMQNILLKFDGIDSCGSEAVRARRKAEVTKVQDVLRGLDAAART P* |
| Coding | >Hirsu2|3436 ATGTCGAGATATGGCTGGTCGCTTAGGGGCAACCAAGGCCGTCCCTACGGCGCCGTGCCCGGAGTCCCCGCCGTG ACGGACGACGACTTCAGCTACATCACCTCCCAAGACCTGGACGACGCTCCCCTGGGCGCGTCTGGCTCGCGCCAT CACCCCAGATCGCAATCGGCAGCGCCGCCCGCGCCCGAAGACGACGTCCTCATCATCAAGAACAAGGGCATCACG TACCCTGCGCACTTCCCTGCCTACTCAATCGGGGACGGAAAGCTGCACGTGCAGGATGTTCGAGACCGCGTGGGC TTGATGATGGACCTGCCCGACCGGGCCGCCGCCCGCCTCAAGCTCTTGTACAAGGGCAAGCAGCTCAAGGAGCCC AATTCGCCCGTCCGGGACTATGGAGTCAAGAACAAGAGCGAGTTGATGGCGGTACTCCCCGACGTCGGCGACGGC AGCAGTGCTTCCGACGAGGAAATGGTCATTGTTGGCGATCCGCCCCGAGACGACTCCAAGTCGCGGCGTCGCAAG AAGAGGAAGCCGAAGAGGGCGGCCGGCAAGGACGACGGCGACTCGGCGAGCAGCGCACGCGACAGCAACTCGCAC TCCAAGTCGCCTCCACCACCGGCAGTGAGCAGCGGTCCGATGAAGGAGATTGACGACCTGGCCGCCGACTTTAGG GCCAAGTGGCTGCCGCTCTGTCTAAAGTTCACGGCCTCGCCACCTGCGGATCCCAAGGCTCGGGAAGAGGAACAC AGGAGGCTTACCGAGTCGCTCATGCAAAACATCCTGCTCAAGTTCGATGGCATTGATTCATGCGGCTCGGAGGCG GTGAGGGCGAGGCGAAAAGCAGAGGTGACCAAGGTGCAAGACGTCCTCAGGGGCCTGGACGCCGCAGCCAGAACC CCGTAA |
| Transcript | >Hirsu2|3436 ATGTCGAGATATGGCTGGTCGCTTAGGGGCAACCAAGGCCGTCCCTACGGCGCCGTGCCCGGAGTCCCCGCCGTG ACGGACGACGACTTCAGCTACATCACCTCCCAAGACCTGGACGACGCTCCCCTGGGCGCGTCTGGCTCGCGCCAT CACCCCAGATCGCAATCGGCAGCGCCGCCCGCGCCCGAAGACGACGTCCTCATCATCAAGAACAAGGGCATCACG TACCCTGCGCACTTCCCTGCCTACTCAATCGGGGACGGAAAGCTGCACGTGCAGGATGTTCGAGACCGCGTGGGC TTGATGATGGACCTGCCCGACCGGGCCGCCGCCCGCCTCAAGCTCTTGTACAAGGGCAAGCAGCTCAAGGAGCCC AATTCGCCCGTCCGGGACTATGGAGTCAAGAACAAGAGCGAGTTGATGGCGGTACTCCCCGACGTCGGCGACGGC AGCAGTGCTTCCGACGAGGAAATGGTCATTGTTGGCGATCCGCCCCGAGACGACTCCAAGTCGCGGCGTCGCAAG AAGAGGAAGCCGAAGAGGGCGGCCGGCAAGGACGACGGCGACTCGGCGAGCAGCGCACGCGACAGCAACTCGCAC TCCAAGTCGCCTCCACCACCGGCAGTGAGCAGCGGTCCGATGAAGGAGATTGACGACCTGGCCGCCGACTTTAGG GCCAAGTGGCTGCCGCTCTGTCTAAAGTTCACGGCCTCGCCACCTGCGGATCCCAAGGCTCGGGAAGAGGAACAC AGGAGGCTTACCGAGTCGCTCATGCAAAACATCCTGCTCAAGTTCGATGGCATTGATTCATGCGGCTCGGAGGCG GTGAGGGCGAGGCGAAAAGCAGAGGTGACCAAGGTGCAAGACGTCCTCAGGGGCCTGGACGCCGCAGCCAGAACC CCGTAA |
| Gene | >Hirsu2|3436 ATGTCGAGATATGGCTGGTCGCTTAGGGGCAACCAAGGCCGTCCCTACGGCGCCGTGCCCGGAGTCCCCGCCGTG ACGGACGACGACTTCAGCTACATCACCTCCCAAGACCTGGACGACGCTCCCCTGGGCGCGTCTGGCTCGCGCCAT CACCCCAGATCGCAATCGGCAGCGCCGCCCGCGCCCGAAGACGACGTCCTCATCATCAAGAACAAGGGCATCACG TACCCTGCGCACTTCCCTGCCTACTCAATCGGGGACGGAAAGCTGCACGTGCAGGATGTTCGAGACCGCGTGGGC TTGATGATGGACCTGCCCGACCGGGCCGCCGCCCGCCTCAAGCTCTTGTACAAGGGCAAGCAGCTCAAGGAGCCC AATTCGCCCGTCCGGGACTATGGAGTCAAGAACAAGAGCGAGTTGATGGCGGTACTCCCCGACGTCGGCGACGGC AGCAGTGCTTCCGACGAGGAAATGGTCATTGTTGGCGATCCGCCCCGAGACGACTCCAAGTCGCGGCGTCGCAAG AAGAGGAAGCCGAAGAGGGCGGCCGGCAAGGACGACGGCGACTCGGCGAGCAGCGCACGCGACAGCAACTCGCAC TCCAAGTCGCCTCCACCACCGGCAGTGAGCAGCGGTCCGATGAAGGAGATTGACGACCTGGCCGCCGACTTTAGG GCCAAGTGGCTGCCGCTCTGTCTAAAGTTCACGGCCTCGCCACCTGCGGATCCCAAGGCTCGGGAAGAGGAACAC AGGAGGCTTACCGAGTCGCTCATGCAAAACATCCTGCTCAAGTTCGATGGCATTGATTCATGCGGCTCGGAGGCG GTGAGGGCGAGGCGAAAAGCAGAGGTGACCAAGGTGCAAGACGTCCTCAGGGGCCTGGACGCCGCAGCCAGAACC CCGTAA |