© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3435 |
| Gene name | |
| Location | Contig_19:41557..42624 |
| Strand | - |
| Gene length (bp) | 1067 |
| Transcript length (bp) | 609 |
| Coding sequence length (bp) | 609 |
| Protein length (aa) | 203 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00572 | Ribosomal_L13 | Ribosomal protein L13 | 8.2E-23 | 7 | 111 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P720|RL16_NEUCR | 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=crp-46 PE=3 SV=1 | 1 | 202 | 2.0E-132 |
| sp|P26784|RL16A_YEAST | 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3 | 3 | 202 | 5.0E-100 |
| sp|O42848|RL16A_SCHPO | 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1602 PE=1 SV=1 | 1 | 202 | 3.0E-96 |
| sp|O42991|RL16B_SCHPO | 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 SV=1 | 1 | 202 | 4.0E-96 |
| sp|P26785|RL16B_YEAST | 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3 | 5 | 202 | 1.0E-94 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P720|RL16_NEUCR | 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=crp-46 PE=3 SV=1 | 1 | 202 | 2.0E-132 |
| sp|P26784|RL16A_YEAST | 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3 | 3 | 202 | 5.0E-100 |
| sp|O42848|RL16A_SCHPO | 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1602 PE=1 SV=1 | 1 | 202 | 3.0E-96 |
| sp|O42991|RL16B_SCHPO | 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1601 PE=1 SV=1 | 1 | 202 | 4.0E-96 |
| sp|P26785|RL16B_YEAST | 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3 | 5 | 202 | 1.0E-94 |
| sp|O43004|RL16C_SCHPO | 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1603 PE=3 SV=1 | 1 | 202 | 2.0E-93 |
| sp|P93099|RL13A_CYAPA | 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1 | 4 | 175 | 3.0E-85 |
| sp|Q3SZ90|RL13A_BOVIN | 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3 | 7 | 202 | 4.0E-82 |
| sp|P40429|RL13A_HUMAN | 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2 | 7 | 192 | 5.0E-82 |
| sp|Q4R8Z2|RL13A_MACFA | 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3 | 7 | 192 | 2.0E-81 |
| sp|P19253|RL13A_MOUSE | 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4 | 7 | 190 | 3.0E-81 |
| sp|Q5RA38|RL13A_PONAB | 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3 | 7 | 192 | 4.0E-81 |
| sp|P35427|RL13A_RAT | 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2 | 7 | 190 | 2.0E-80 |
| sp|Q9XSU0|RL13A_CANLF | 60S ribosomal protein L13a OS=Canis lupus familiaris GN=RPL13A PE=1 SV=2 | 7 | 192 | 5.0E-80 |
| sp|Q9VNE9|RL13A_DROME | 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A PE=1 SV=1 | 8 | 202 | 1.0E-78 |
| sp|Q8MUR4|RL13A_CHOPR | 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A PE=2 SV=1 | 1 | 202 | 3.0E-77 |
| sp|Q962U0|RL13A_SPOFR | 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2 SV=1 | 1 | 202 | 9.0E-77 |
| sp|Q91487|RL13A_SALTR | 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1 | 16 | 201 | 7.0E-75 |
| sp|Q27389|RL13A_CAEEL | 60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1 | 8 | 202 | 1.0E-73 |
| sp|Q9LRX8|R13A2_ARATH | 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1 | 8 | 190 | 4.0E-73 |
| sp|Q9SFU1|R13A1_ARATH | 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1 | 8 | 190 | 1.0E-72 |
| sp|Q9SVR0|R13A3_ARATH | 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1 | 8 | 187 | 2.0E-72 |
| sp|Q9FKC0|R13A4_ARATH | 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1 | 8 | 190 | 2.0E-71 |
| sp|O65055|RL13A_PICMA | 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1 | 8 | 183 | 2.0E-71 |
| sp|P0DJ15|RL13A_TETTS | 60S ribosomal protein L13a OS=Tetrahymena thermophila (strain SB210) GN=RPL13A PE=1 SV=1 | 4 | 202 | 5.0E-68 |
| sp|Q553M7|RL13A_DICDI | 60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=1 SV=1 | 8 | 172 | 2.0E-67 |
| sp|O49885|RL13A_LUPLU | 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1 | 8 | 184 | 4.0E-66 |
| sp|Q95307|RL13A_PIG | 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2 | 7 | 143 | 2.0E-61 |
| sp|Q6NVV1|R13P3_HUMAN | Putative 60S ribosomal protein L13a protein RPL13AP3 OS=Homo sapiens GN=RPL13AP3 PE=5 SV=1 | 89 | 186 | 8.0E-30 |
| sp|O29137|RL13_ARCFU | 50S ribosomal protein L13 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=rpl13 PE=3 SV=1 | 5 | 150 | 2.0E-23 |
| sp|Q46CK6|RL13_METBF | 50S ribosomal protein L13 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13 PE=3 SV=1 | 7 | 151 | 1.0E-22 |
| sp|Q8TT43|RL13_METAC | 50S ribosomal protein L13 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl13 PE=3 SV=1 | 7 | 151 | 1.0E-22 |
| sp|Q12TI6|RL13_METBU | 50S ribosomal protein L13 OS=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) GN=rpl13 PE=3 SV=1 | 7 | 151 | 7.0E-22 |
| sp|Q5JJF6|RL13_THEKO | 50S ribosomal protein L13 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpl13 PE=3 SV=1 | 9 | 151 | 8.0E-22 |
| sp|O26146|RLSX_METTH | Fused L13/S9 ribosomal protein OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=rpl13/rps9 PE=3 SV=1 | 7 | 152 | 1.0E-21 |
| sp|Q8PW45|RL13_METMA | 50S ribosomal protein L13 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=rpl13 PE=3 SV=2 | 7 | 151 | 1.0E-21 |
| sp|Q2NFZ8|RL13_METST | 50S ribosomal protein L13 OS=Methanosphaera stadtmanae (strain ATCC 43021 / DSM 3091 / JCM 11832 / MCB-3) GN=rpl13 PE=3 SV=1 | 7 | 151 | 2.0E-21 |
| sp|Q8ZYQ1|RL13_PYRAE | 50S ribosomal protein L13 OS=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=rpl13 PE=3 SV=1 | 8 | 140 | 6.0E-21 |
| sp|A1RSE1|RL13_PYRIL | 50S ribosomal protein L13 OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189 / GEO3) GN=rpl13 PE=3 SV=1 | 8 | 156 | 8.0E-21 |
| sp|Q9V196|RL13_PYRAB | 50S ribosomal protein L13 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpl13 PE=3 SV=1 | 9 | 151 | 1.0E-20 |
| sp|P95991|RL13_SULSO | 50S ribosomal protein L13 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13 PE=3 SV=1 | 5 | 149 | 1.0E-20 |
| sp|O59300|RL13_PYRHO | 50S ribosomal protein L13 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpl13 PE=1 SV=1 | 9 | 151 | 2.0E-20 |
| sp|B1YC32|RL13_PYRNV | 50S ribosomal protein L13 OS=Pyrobaculum neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl13 PE=3 SV=1 | 8 | 147 | 3.0E-20 |
| sp|Q2FTN5|RL13_METHJ | 50S ribosomal protein L13 OS=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) GN=rpl13 PE=3 SV=1 | 7 | 151 | 3.0E-20 |
| sp|Q8TVB6|RL13_METKA | 50S ribosomal protein L13 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl13 PE=3 SV=1 | 5 | 150 | 5.0E-20 |
| sp|Q8U0E6|RL13_PYRFU | 50S ribosomal protein L13 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl13 PE=1 SV=1 | 9 | 151 | 8.0E-20 |
| sp|P54023|RL13_METJA | 50S ribosomal protein L13 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=rpl13 PE=3 SV=2 | 7 | 151 | 3.0E-17 |
| sp|Q3IQT4|RL13_NATPD | 50S ribosomal protein L13 OS=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) GN=rpl13 PE=3 SV=1 | 2 | 148 | 6.0E-17 |
| sp|P29198|RL13_HALMA | 50S ribosomal protein L13 OS=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl13 PE=1 SV=1 | 1 | 148 | 2.0E-16 |
| sp|Q74ND7|RL13_NANEQ | 50S ribosomal protein L13 OS=Nanoarchaeum equitans (strain Kin4-M) GN=rpl13 PE=3 SV=1 | 8 | 151 | 3.0E-16 |
| sp|Q96YW2|RL13_SULTO | 50S ribosomal protein L13 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rpl13 PE=3 SV=1 | 5 | 148 | 4.0E-14 |
| sp|P39473|RL13_SULAC | 50S ribosomal protein L13 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=rpl13 PE=3 SV=2 | 1 | 148 | 7.0E-14 |
| sp|Q9HQJ3|RL13_HALSA | 50S ribosomal protein L13 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpl13 PE=3 SV=1 | 1 | 148 | 2.0E-13 |
| sp|Q6L294|RL13_PICTO | 50S ribosomal protein L13 OS=Picrophilus torridus (strain ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828) GN=rpl13 PE=3 SV=1 | 7 | 152 | 2.0E-13 |
| sp|Q9HL07|RL13_THEAC | 50S ribosomal protein L13 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165) GN=rpl13 PE=3 SV=1 | 9 | 148 | 2.0E-13 |
| sp|Q979K2|RL13_THEVO | 50S ribosomal protein L13 OS=Thermoplasma volcanium (strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=rpl13 PE=3 SV=1 | 9 | 111 | 3.0E-13 |
| sp|Q9YB50|RL13_AERPE | 50S ribosomal protein L13 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl13 PE=3 SV=1 | 8 | 150 | 6.0E-13 |
| sp|Q6LXM6|RL13_METMP | 50S ribosomal protein L13 OS=Methanococcus maripaludis (strain S2 / LL) GN=rpl13 PE=3 SV=1 | 18 | 151 | 1.0E-12 |
| sp|Q18G58|RL13_HALWD | 50S ribosomal protein L13 OS=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) GN=rpl13 PE=3 SV=1 | 1 | 148 | 2.0E-12 |
| sp|B8IZP2|RL13_DESDA | 50S ribosomal protein L13 OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=rplM PE=3 SV=1 | 1 | 114 | 5.0E-08 |
| sp|B8GNH1|RL13_THISH | 50S ribosomal protein L13 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) GN=rplM PE=3 SV=1 | 9 | 128 | 9.0E-08 |
| sp|Q728T4|RL13_DESVH | 50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=rplM PE=3 SV=1 | 1 | 114 | 1.0E-07 |
| sp|A1VBD3|RL13_DESVV | 50S ribosomal protein L13 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplM PE=3 SV=1 | 1 | 114 | 1.0E-07 |
| sp|Q30Y43|RL13_DESAG | 50S ribosomal protein L13 OS=Desulfovibrio alaskensis (strain G20) GN=rplM PE=3 SV=1 | 9 | 128 | 2.0E-07 |
| sp|A5EXM0|RL13_DICNV | 50S ribosomal protein L13 OS=Dichelobacter nodosus (strain VCS1703A) GN=rplM PE=3 SV=1 | 9 | 109 | 4.0E-07 |
| sp|Q3AW67|RL13_SYNS9 | 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9902) GN=rplM PE=3 SV=2 | 9 | 128 | 4.0E-07 |
| sp|Q0A6F3|RL13_ALKEH | 50S ribosomal protein L13 OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) GN=rplM PE=3 SV=1 | 9 | 109 | 6.0E-07 |
| sp|Q2LPM2|RL13_SYNAS | 50S ribosomal protein L13 OS=Syntrophus aciditrophicus (strain SB) GN=rplM PE=3 SV=1 | 9 | 109 | 7.0E-07 |
| sp|Q6ANL8|RL13_DESPS | 50S ribosomal protein L13 OS=Desulfotalea psychrophila (strain LSv54 / DSM 12343) GN=rplM PE=3 SV=1 | 9 | 114 | 1.0E-06 |
| sp|Q3AMQ6|RL13_SYNSC | 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9605) GN=rplM PE=3 SV=1 | 9 | 128 | 2.0E-06 |
| sp|Q1MQW4|RL13_LAWIP | 50S ribosomal protein L13 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rplM PE=3 SV=1 | 9 | 126 | 2.0E-06 |
| sp|Q2YBK2|RL13_NITMU | 50S ribosomal protein L13 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplM PE=3 SV=1 | 9 | 114 | 3.0E-06 |
| sp|C5BS66|RL13_TERTT | 50S ribosomal protein L13 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rplM PE=3 SV=1 | 9 | 128 | 4.0E-06 |
| sp|B8DPL7|RL13_DESVM | 50S ribosomal protein L13 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplM PE=3 SV=1 | 1 | 114 | 5.0E-06 |
| sp|Q9SYL9|RK13_ARATH | 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana GN=RPL13 PE=2 SV=1 | 1 | 132 | 6.0E-06 |
| sp|Q318L0|RL13_PROM9 | 50S ribosomal protein L13 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplM PE=3 SV=1 | 9 | 114 | 7.0E-06 |
| sp|A1K971|RL13_AZOSB | 50S ribosomal protein L13 OS=Azoarcus sp. (strain BH72) GN=rplM PE=3 SV=1 | 9 | 114 | 7.0E-06 |
| sp|C0ZIL3|RL13_BREBN | 50S ribosomal protein L13 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplM PE=3 SV=1 | 9 | 114 | 8.0E-06 |
| sp|Q7U4H5|RL13_SYNPX | 50S ribosomal protein L13 OS=Synechococcus sp. (strain WH8102) GN=rplM PE=3 SV=1 | 9 | 128 | 8.0E-06 |
| sp|Q0ID31|RL13_SYNS3 | 50S ribosomal protein L13 OS=Synechococcus sp. (strain CC9311) GN=rplM PE=3 SV=1 | 9 | 133 | 9.0E-06 |
| sp|Q9HVY2|RL13_PSEAE | 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplM PE=3 SV=1 | 9 | 128 | 1.0E-05 |
| sp|Q02H07|RL13_PSEAB | 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rplM PE=3 SV=1 | 9 | 128 | 1.0E-05 |
| sp|B7UZL1|RL13_PSEA8 | 50S ribosomal protein L13 OS=Pseudomonas aeruginosa (strain LESB58) GN=rplM PE=3 SV=1 | 9 | 128 | 1.0E-05 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006412 | translation | Yes |
| GO:0003735 | structural constituent of ribosome | Yes |
| GO:0005840 | ribosome | Yes |
| GO:0034645 | cellular macromolecule biosynthetic process | No |
| GO:0008150 | biological_process | No |
| GO:0043228 | non-membrane-bounded organelle | No |
| GO:0009058 | biosynthetic process | No |
| GO:0044249 | cellular biosynthetic process | No |
| GO:0043226 | organelle | No |
| GO:0043232 | intracellular non-membrane-bounded organelle | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044271 | cellular nitrogen compound biosynthetic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0009059 | macromolecule biosynthetic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0043229 | intracellular organelle | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0009987 | cellular process | No |
| GO:0043043 | peptide biosynthetic process | No |
| GO:0005198 | structural molecule activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:1901566 | organonitrogen compound biosynthetic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0003674 | molecular_function | No |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0005575 | cellular_component | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0043604 | amide biosynthetic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5268 | 0.2416 | 0.0353 | 0.019 | 0.5117 | 0.082 | 0.2525 | 0.1311 | 0.0212 | 0.0029 |
| Orthofinder run ID | 4 |
| Orthogroup | 2420 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3435 MSSFEPVVVIDGKGHLLGRLASIVAKQLLNGQKIVIVRCEALNISGEFFRAKLKYHAYLRKMTRYNPTRGGPFHF RAPSRIFYKAVRGMIPHKTARGTAALERLKVFEGVPPPYDKMKKMVVPQALRVLRLQPGRKYCTVGRLSHEVGWK YQDVVARLEERRKAKGAAYYERKKVAARQLSDAKKNAATKTETAKALAAYGY* |
| Coding | >Hirsu2|3435 ATGTCGTCGTTCGAGCCGGTTGTCGTCATCGATGGCAAGGGCCACCTGCTTGGTCGTCTCGCTAGCATCGTCGCC AAGCAGCTCCTTAACGGCCAGAAGATCGTCATTGTGCGTTGCGAGGCGCTCAACATCTCTGGCGAGTTCTTCCGC GCGAAGCTCAAGTACCACGCCTACCTGCGCAAGATGACGCGATACAACCCCACTCGTGGTGGCCCGTTCCACTTC CGCGCTCCCTCACGAATCTTCTACAAGGCCGTCCGCGGCATGATCCCTCACAAGACCGCCCGGGGTACCGCTGCC CTCGAGCGACTCAAGGTCTTTGAGGGTGTCCCCCCTCCCTACGACAAGATGAAGAAGATGGTCGTTCCCCAGGCC CTCCGTGTTCTGCGACTGCAGCCCGGCCGGAAGTACTGCACCGTCGGTCGCCTGAGCCACGAGGTCGGCTGGAAG TACCAGGATGTTGTTGCTCGGCTGGAGGAGCGGAGAAAGGCCAAGGGCGCCGCCTACTACGAGCGCAAGAAGGTT GCCGCGCGGCAACTGTCGGACGCGAAGAAGAACGCTGCGACGAAGACGGAGACTGCGAAGGCCCTCGCAGCCTAT GGCTACTGA |
| Transcript | >Hirsu2|3435 ATGTCGTCGTTCGAGCCGGTTGTCGTCATCGATGGCAAGGGCCACCTGCTTGGTCGTCTCGCTAGCATCGTCGCC AAGCAGCTCCTTAACGGCCAGAAGATCGTCATTGTGCGTTGCGAGGCGCTCAACATCTCTGGCGAGTTCTTCCGC GCGAAGCTCAAGTACCACGCCTACCTGCGCAAGATGACGCGATACAACCCCACTCGTGGTGGCCCGTTCCACTTC CGCGCTCCCTCACGAATCTTCTACAAGGCCGTCCGCGGCATGATCCCTCACAAGACCGCCCGGGGTACCGCTGCC CTCGAGCGACTCAAGGTCTTTGAGGGTGTCCCCCCTCCCTACGACAAGATGAAGAAGATGGTCGTTCCCCAGGCC CTCCGTGTTCTGCGACTGCAGCCCGGCCGGAAGTACTGCACCGTCGGTCGCCTGAGCCACGAGGTCGGCTGGAAG TACCAGGATGTTGTTGCTCGGCTGGAGGAGCGGAGAAAGGCCAAGGGCGCCGCCTACTACGAGCGCAAGAAGGTT GCCGCGCGGCAACTGTCGGACGCGAAGAAGAACGCTGCGACGAAGACGGAGACTGCGAAGGCCCTCGCAGCCTAT GGCTACTGA |
| Gene | >Hirsu2|3435 ATGTCGTCGTTCGAGCCGGTTGTGAGTTGACATCTGCTTGCCTCGTGCAACACCCCCCGGGCCGTGACGACGGGG CTCGGCCGGGAGACAGGAAGCGCATAGGGGAGAGAGGCTTGGATCAAAATAGCCAGCCGGAGGCGCCGTCTCCCT TTTCGCTCTGCTCCCACGGCCTGAGCTCATACGTTACCGTGCCGTCGGCGAGGGGAAGCGTGGGCGCGGGAGTCA GGACTGACAGCCACCGTGTCCAGGTCGTCATCGATGGCAAGGGCCACCTGCTTGGTCGTCTCGCTAGCATCGTCG CCAAGCAGCTCCTTAACGGCCAGAAGATCGTCATTGTGCGTTGCGAGGCGCTCAACATCTCTGGCGAGTTCTTCC GCGCGAAGCGTACGTCGCCCACCCTTGCTGGACCAGACATTGTCGAATATCTCCGTGCTCGCGCCAGGACTCGCG CGCGTCGCGCCACGACACCCAAGAAGAGGATCGGGAGCTGACTGCTGAACAGTCAAGTACCACGCCTACCTGCGC AAGATGACGCGATACAACCCCACTCGTGGTGGTGAGTGCGATCCGAATCGTGCGCGACGCCGAGCCGCTCGCTGA TTGAAGCTGTCAGGCCCGTTCCACTTCCGCGCTCCCTCACGAATCTTCTACAAGGCCGTCCGCGGCATGATCCCT CACAAGACCGCCCGGGGTACCGCTGCCCTCGAGCGACTCAAGGTCTTTGAGGGTGTCCCCCCTCCCTACGACAAG ATGAAGAAGATGGTCGTTCCCCAGGCCCTCCGTGTTCTGCGACTGCAGCCCGGCCGGAAGTACTGCACCGTCGGT CGCCTGAGCCACGAGGTCGGCTGGAAGTACCAGGATGTTGTTGCTCGGTACGTCTGCGCGCGGAGGAGAGAACCA AGGACGGGATGCTTACTCGCGCACACAGGCTGGAGGAGCGGAGAAAGGCCAAGGGCGCCGCCTACTACGAGCGCA AGAAGGTTGCCGCGCGGCAACTGTCGGACGCGAAGAAGAACGCTGCGACGAAGACGGAGACTGCGAAGGCCCTCG CAGCCTATGGCTACTGA |