Protein ID | Hirsu2|3428 |
Gene name | |
Location | Contig_19:28312..29785 |
Strand | - |
Gene length (bp) | 1473 |
Transcript length (bp) | 1473 |
Coding sequence length (bp) | 1473 |
Protein length (aa) | 491 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF13091 | PLDc_2 | PLD-like domain | 3.6E-09 | 317 | 465 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cytoplasm | 0.664 | 0.4728 | 0.0566 | 0.0222 | 0.2393 | 0.0465 | 0.0807 | 0.4141 | 0.0504 | 0.0651 |
Orthofinder run ID | 4 |
Orthogroup | 2415 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3428 MSSPAEFPAGFVRPWKERVASHRAEQLNDLPNDHVTNLDALITTSAPKSLLVGTGFSIYTRALLPAILAAKRNVH FVTCYWAASPTLDAFSDALVRLAASRAPWEGSAPPLRITIGFSSRALFQKLFHTSSRDGYVYPPSQWARLGLPNQ DTLRSGGIEMTVKSLFFTPFSVMHPKYVIVDGARAFLPSCNVSWERWFEGCIELEGHVVRALLTFHERVWGMSTA PDARPGRTDEMEADDPSVETSHISHISNPAVTDTFEPGNDGSSAKQSIQLQFPKPVPTILLPSSHHRNPKFSFFP FLSQSNPPMTPLNAALLTLFANARREITVLTPNLTSWPVLEALLAALARGVDVHIRTSKGMMMIEQLVTAGTTTS RCLQQFIRQYQKLHSQRQPMDLEAQPVSPGRLEILYFKPLSGRIESQDEPVVSHFKMTMIDGEYLVLGSGNMDRA SWWTSQELGMLFYVPGFQGHKMWDKILGWRTEVHFRSRSH* |
Coding | >Hirsu2|3428 ATGTCGTCACCGGCCGAGTTCCCGGCCGGGTTCGTAAGGCCATGGAAAGAACGCGTCGCGTCTCATCGGGCTGAG CAGCTCAACGACTTGCCCAATGACCACGTCACCAACCTGGACGCGCTCATCACGACCAGCGCACCAAAGTCTCTG CTTGTCGGCACCGGATTCTCCATTTACACGCGTGCCCTCCTCCCAGCCATTCTTGCGGCCAAGCGCAATGTGCAC TTTGTGACCTGCTACTGGGCTGCTTCTCCAACTCTGGACGCCTTCAGCGACGCCCTGGTCCGGCTTGCGGCATCT CGCGCCCCTTGGGAAGGGAGCGCGCCTCCGCTCCGCATCACGATAGGCTTTTCCTCCCGAGCACTTTTCCAGAAG CTGTTCCACACCTCTTCCCGGGATGGATACGTCTATCCGCCGTCGCAATGGGCAAGGCTGGGCCTCCCAAACCAG GACACGCTGCGAAGCGGCGGGATCGAGATGACGGTCAAGAGCCTCTTCTTCACCCCATTCAGTGTCATGCATCCA AAATACGTCATCGTTGACGGCGCAAGGGCGTTCTTGCCGAGCTGCAACGTCAGTTGGGAGCGATGGTTCGAGGGA TGTATCGAGCTGGAGGGACACGTCGTACGGGCTCTGTTGACCTTTCACGAGAGAGTCTGGGGTATGAGCACGGCG CCAGACGCCAGACCGGGCAGGACAGACGAAATGGAAGCAGATGACCCAAGCGTTGAGACTTCGCACATCTCGCAC ATCTCGAATCCAGCGGTAACGGACACGTTTGAGCCAGGAAATGACGGATCGTCGGCCAAGCAATCCATCCAGCTC CAATTCCCCAAGCCCGTCCCCACGATTCTCCTCCCTTCCTCGCACCACCGCAATCCAAAATTCAGCTTCTTCCCC TTCTTGTCCCAGTCTAACCCGCCCATGACACCGTTGAACGCGGCCTTGCTCACGTTGTTCGCTAACGCGAGAAGA GAGATCACCGTCCTGACTCCAAACCTCACCTCGTGGCCCGTTCTGGAGGCCCTACTGGCGGCGCTCGCTCGTGGC GTTGACGTCCACATCCGAACGAGTAAGGGCATGATGATGATCGAGCAACTCGTGACGGCCGGCACGACAACGTCG AGGTGCCTCCAACAATTCATCCGGCAGTACCAAAAGCTGCATTCACAAAGGCAGCCGATGGATCTGGAGGCTCAG CCAGTGTCACCCGGGAGGCTAGAGATTCTGTACTTCAAGCCGTTGTCTGGTCGAATAGAGAGCCAAGACGAGCCG GTGGTTAGCCATTTCAAGATGACCATGATCGATGGCGAATATCTCGTGCTGGGGTCGGGGAATATGGATAGAGCG AGCTGGTGGACAAGCCAGGAGCTGGGAATGCTCTTCTACGTCCCGGGGTTTCAGGGCCACAAAATGTGGGACAAG ATCTTGGGATGGCGAACCGAGGTTCACTTCCGATCGAGGAGTCACTAA |
Transcript | >Hirsu2|3428 ATGTCGTCACCGGCCGAGTTCCCGGCCGGGTTCGTAAGGCCATGGAAAGAACGCGTCGCGTCTCATCGGGCTGAG CAGCTCAACGACTTGCCCAATGACCACGTCACCAACCTGGACGCGCTCATCACGACCAGCGCACCAAAGTCTCTG CTTGTCGGCACCGGATTCTCCATTTACACGCGTGCCCTCCTCCCAGCCATTCTTGCGGCCAAGCGCAATGTGCAC TTTGTGACCTGCTACTGGGCTGCTTCTCCAACTCTGGACGCCTTCAGCGACGCCCTGGTCCGGCTTGCGGCATCT CGCGCCCCTTGGGAAGGGAGCGCGCCTCCGCTCCGCATCACGATAGGCTTTTCCTCCCGAGCACTTTTCCAGAAG CTGTTCCACACCTCTTCCCGGGATGGATACGTCTATCCGCCGTCGCAATGGGCAAGGCTGGGCCTCCCAAACCAG GACACGCTGCGAAGCGGCGGGATCGAGATGACGGTCAAGAGCCTCTTCTTCACCCCATTCAGTGTCATGCATCCA AAATACGTCATCGTTGACGGCGCAAGGGCGTTCTTGCCGAGCTGCAACGTCAGTTGGGAGCGATGGTTCGAGGGA TGTATCGAGCTGGAGGGACACGTCGTACGGGCTCTGTTGACCTTTCACGAGAGAGTCTGGGGTATGAGCACGGCG CCAGACGCCAGACCGGGCAGGACAGACGAAATGGAAGCAGATGACCCAAGCGTTGAGACTTCGCACATCTCGCAC ATCTCGAATCCAGCGGTAACGGACACGTTTGAGCCAGGAAATGACGGATCGTCGGCCAAGCAATCCATCCAGCTC CAATTCCCCAAGCCCGTCCCCACGATTCTCCTCCCTTCCTCGCACCACCGCAATCCAAAATTCAGCTTCTTCCCC TTCTTGTCCCAGTCTAACCCGCCCATGACACCGTTGAACGCGGCCTTGCTCACGTTGTTCGCTAACGCGAGAAGA GAGATCACCGTCCTGACTCCAAACCTCACCTCGTGGCCCGTTCTGGAGGCCCTACTGGCGGCGCTCGCTCGTGGC GTTGACGTCCACATCCGAACGAGTAAGGGCATGATGATGATCGAGCAACTCGTGACGGCCGGCACGACAACGTCG AGGTGCCTCCAACAATTCATCCGGCAGTACCAAAAGCTGCATTCACAAAGGCAGCCGATGGATCTGGAGGCTCAG CCAGTGTCACCCGGGAGGCTAGAGATTCTGTACTTCAAGCCGTTGTCTGGTCGAATAGAGAGCCAAGACGAGCCG GTGGTTAGCCATTTCAAGATGACCATGATCGATGGCGAATATCTCGTGCTGGGGTCGGGGAATATGGATAGAGCG AGCTGGTGGACAAGCCAGGAGCTGGGAATGCTCTTCTACGTCCCGGGGTTTCAGGGCCACAAAATGTGGGACAAG ATCTTGGGATGGCGAACCGAGGTTCACTTCCGATCGAGGAGTCACTAA |
Gene | >Hirsu2|3428 ATGTCGTCACCGGCCGAGTTCCCGGCCGGGTTCGTAAGGCCATGGAAAGAACGCGTCGCGTCTCATCGGGCTGAG CAGCTCAACGACTTGCCCAATGACCACGTCACCAACCTGGACGCGCTCATCACGACCAGCGCACCAAAGTCTCTG CTTGTCGGCACCGGATTCTCCATTTACACGCGTGCCCTCCTCCCAGCCATTCTTGCGGCCAAGCGCAATGTGCAC TTTGTGACCTGCTACTGGGCTGCTTCTCCAACTCTGGACGCCTTCAGCGACGCCCTGGTCCGGCTTGCGGCATCT CGCGCCCCTTGGGAAGGGAGCGCGCCTCCGCTCCGCATCACGATAGGCTTTTCCTCCCGAGCACTTTTCCAGAAG CTGTTCCACACCTCTTCCCGGGATGGATACGTCTATCCGCCGTCGCAATGGGCAAGGCTGGGCCTCCCAAACCAG GACACGCTGCGAAGCGGCGGGATCGAGATGACGGTCAAGAGCCTCTTCTTCACCCCATTCAGTGTCATGCATCCA AAATACGTCATCGTTGACGGCGCAAGGGCGTTCTTGCCGAGCTGCAACGTCAGTTGGGAGCGATGGTTCGAGGGA TGTATCGAGCTGGAGGGACACGTCGTACGGGCTCTGTTGACCTTTCACGAGAGAGTCTGGGGTATGAGCACGGCG CCAGACGCCAGACCGGGCAGGACAGACGAAATGGAAGCAGATGACCCAAGCGTTGAGACTTCGCACATCTCGCAC ATCTCGAATCCAGCGGTAACGGACACGTTTGAGCCAGGAAATGACGGATCGTCGGCCAAGCAATCCATCCAGCTC CAATTCCCCAAGCCCGTCCCCACGATTCTCCTCCCTTCCTCGCACCACCGCAATCCAAAATTCAGCTTCTTCCCC TTCTTGTCCCAGTCTAACCCGCCCATGACACCGTTGAACGCGGCCTTGCTCACGTTGTTCGCTAACGCGAGAAGA GAGATCACCGTCCTGACTCCAAACCTCACCTCGTGGCCCGTTCTGGAGGCCCTACTGGCGGCGCTCGCTCGTGGC GTTGACGTCCACATCCGAACGAGTAAGGGCATGATGATGATCGAGCAACTCGTGACGGCCGGCACGACAACGTCG AGGTGCCTCCAACAATTCATCCGGCAGTACCAAAAGCTGCATTCACAAAGGCAGCCGATGGATCTGGAGGCTCAG CCAGTGTCACCCGGGAGGCTAGAGATTCTGTACTTCAAGCCGTTGTCTGGTCGAATAGAGAGCCAAGACGAGCCG GTGGTTAGCCATTTCAAGATGACCATGATCGATGGCGAATATCTCGTGCTGGGGTCGGGGAATATGGATAGAGCG AGCTGGTGGACAAGCCAGGAGCTGGGAATGCTCTTCTACGTCCCGGGGTTTCAGGGCCACAAAATGTGGGACAAG ATCTTGGGATGGCGAACCGAGGTTCACTTCCGATCGAGGAGTCACTAA |