© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3421 |
| Gene name | |
| Location | Contig_19:9743..10130 |
| Strand | + |
| Gene length (bp) | 387 |
| Transcript length (bp) | 387 |
| Coding sequence length (bp) | 387 |
| Protein length (aa) | 129 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.3361 | 0.2491 | 0.3094 | 0.3244 | 0.3839 | 0.0387 | 0.4341 | 0.3401 | 0.3129 | 0.2733 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 24 | 46 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9345 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3421 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3421 MLGSLGLLHAAAIEETWQHPQSGWAFVNIIIITTMPPLLFPLLNTLHAFTPGFLRRQQEKQSARRPATFFPHNVA KLPAVQRGWQGARSGLPGSQVQGLLRNRRLRRRQRQGDLAAVFGDHSIDDALF* |
| Coding | >Hirsu2|3421 ATGTTGGGCAGTTTGGGCCTTCTTCATGCTGCCGCAATCGAAGAAACATGGCAACACCCACAAAGCGGCTGGGCT TTTGTCAACATCATTATCATCACCACCATGCCGCCGCTTCTCTTCCCTCTTCTCAACACCCTCCACGCATTCACG CCGGGATTTCTTCGCCGACAACAAGAGAAGCAGTCGGCCCGTCGTCCAGCTACATTTTTTCCGCACAATGTTGCC AAACTCCCCGCAGTTCAGCGCGGCTGGCAAGGCGCGCGTAGTGGCCTCCCTGGAAGCCAGGTCCAAGGTCTTTTG CGAAATCGACGATTACGACGCCGACAGCGTCAAGGAGACCTGGCCGCCGTCTTCGGGGACCACTCCATCGACGAC GCCCTCTTCTAG |
| Transcript | >Hirsu2|3421 ATGTTGGGCAGTTTGGGCCTTCTTCATGCTGCCGCAATCGAAGAAACATGGCAACACCCACAAAGCGGCTGGGCT TTTGTCAACATCATTATCATCACCACCATGCCGCCGCTTCTCTTCCCTCTTCTCAACACCCTCCACGCATTCACG CCGGGATTTCTTCGCCGACAACAAGAGAAGCAGTCGGCCCGTCGTCCAGCTACATTTTTTCCGCACAATGTTGCC AAACTCCCCGCAGTTCAGCGCGGCTGGCAAGGCGCGCGTAGTGGCCTCCCTGGAAGCCAGGTCCAAGGTCTTTTG CGAAATCGACGATTACGACGCCGACAGCGTCAAGGAGACCTGGCCGCCGTCTTCGGGGACCACTCCATCGACGAC GCCCTCTTCTAG |
| Gene | >Hirsu2|3421 ATGTTGGGCAGTTTGGGCCTTCTTCATGCTGCCGCAATCGAAGAAACATGGCAACACCCACAAAGCGGCTGGGCT TTTGTCAACATCATTATCATCACCACCATGCCGCCGCTTCTCTTCCCTCTTCTCAACACCCTCCACGCATTCACG CCGGGATTTCTTCGCCGACAACAAGAGAAGCAGTCGGCCCGTCGTCCAGCTACATTTTTTCCGCACAATGTTGCC AAACTCCCCGCAGTTCAGCGCGGCTGGCAAGGCGCGCGTAGTGGCCTCCCTGGAAGCCAGGTCCAAGGTCTTTTG CGAAATCGACGATTACGACGCCGACAGCGTCAAGGAGACCTGGCCGCCGTCTTCGGGGACCACTCCATCGACGAC GCCCTCTTCTAG |