Protein ID | Hirsu2|3415 |
Gene name | |
Location | Contig_1899:338..1937 |
Strand | + |
Gene length (bp) | 1599 |
Transcript length (bp) | 1599 |
Coding sequence length (bp) | 1599 |
Protein length (aa) | 533 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF11754 | Velvet | Velvet factor | 3.8E-18 | 319 | 389 |
PF11754 | Velvet | Velvet factor | 7.5E-32 | 392 | 498 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.3347 | 0.9508 | 0.0469 | 0.0325 | 0.0925 | 0.0019 | 0.0659 | 0.0337 | 0.0108 | 0.009 |
Orthofinder run ID | 4 |
Orthogroup | 2412 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3415 MGALALRYAKLALFVPLRPTALTMSSLPGHYPYMTTASSPVVMNQAPMSSSPIKIEPRGHGSLEDMSLPCENWTP DQHGQHHNHGHHYHHHSHLHNHTHNHSHNHNHNHNHAAHGFAAAPAQRGPRLLPPPDSLMSGTPSTLHSHHHPSP PPLPTPFEDRLRVSTPSHTSHPPSLPPPSTFPARGAAGDYIQIPSQQRGREAWILPSTTLTGSDSLPSPAASQPP PAPHFQPPQPSPLHNYPPRLQGAEFHRDAAASRRLNAQPTGLPPSQADRPPPPPPPPPPSAAARARQTSDGTSLP GMPNLLGAGRAQALSDIRFRLRLRQQPRAARACGFGDRDRRVIDPPPIVQLVVESSSMTDDEVQSYLRYESYVMN CAICDETGTRDASFMPEEYQHQRRLMGSLVGTPFVGQDENGDEGCFFCFGDLSCRTPGAFRLKFTLIMIDPSRAG MIRHFPILTEALSDVFHVYSAKEFPGMLPSSNLAKRLKEQGCIISIKKGNERSRNPRLLDDLSDMDEDGGDGPQR RRRMARD* |
Coding | >Hirsu2|3415 ATGGGCGCCCTGGCGCTACGGTACGCCAAGCTTGCCCTCTTCGTCCCCCTACGGCCGACAGCGTTGACCATGTCT TCGCTTCCAGGCCACTACCCGTACATGACGACCGCCAGCAGTCCAGTCGTCATGAACCAAGCTCCCATGTCCTCC TCCCCCATCAAGATAGAGCCTCGAGGGCATGGTAGCCTTGAAGACATGTCTCTCCCCTGCGAGAACTGGACGCCG GACCAGCACGGTCAACACCACAACCACGGCCATCACTACCACCACCACAGCCATCTTCACAACCACACGCACAAT CACAGCCACAACCACAACCACAACCACAACCACGCTGCTCACGGCTTCGCTGCCGCCCCGGCCCAGCGAGGCCCT CGGCTGCTGCCTCCCCCGGACAGCCTCATGAGCGGGACGCCAAGTACATTACACTCCCATCACCACCCTTCACCC CCGCCCCTGCCGACTCCCTTTGAGGACCGGCTGAGGGTGAGCACTCCGTCCCACACATCCCACCCGCCGTCTCTC CCGCCACCTTCCACCTTCCCGGCCCGCGGCGCAGCAGGCGACTATATCCAGATTCCATCGCAGCAGCGCGGCCGG GAGGCCTGGATACTGCCGTCGACGACGCTTACGGGCTCCGATTCTCTGCCGTCCCCGGCGGCGTCTCAACCGCCC CCAGCACCCCATTTTCAGCCGCCGCAACCGTCGCCGTTGCACAACTACCCACCACGCCTGCAGGGCGCGGAGTTT CATCGTGACGCGGCAGCATCGCGTCGCCTGAACGCTCAGCCGACCGGCCTCCCCCCGAGCCAGGCGGACAGGCCG CCGCCGCCGCCGCCGCCACCGCCACCATCCGCAGCGGCCCGGGCTCGCCAGACGTCGGACGGGACGTCGCTGCCC GGAATGCCCAACCTCTTGGGAGCCGGTCGAGCGCAAGCGCTGAGCGACATCCGATTCCGATTGCGTCTGCGGCAA CAACCGAGGGCGGCGCGGGCCTGCGGGTTCGGCGACCGGGACCGGCGCGTCATCGACCCGCCGCCCATTGTCCAG CTGGTCGTCGAGAGCTCCAGCATGACAGATGACGAGGTCCAGTCGTACCTGCGCTACGAGAGCTACGTCATGAAC TGCGCCATCTGCGACGAGACGGGCACGCGCGATGCGTCCTTCATGCCCGAGGAGTACCAGCATCAACGGCGTTTG ATGGGTTCCCTGGTCGGGACTCCGTTCGTCGGCCAGGATGAGAACGGCGACGAGGGGTGCTTCTTCTGCTTCGGC GATCTATCGTGTCGCACGCCCGGGGCCTTTCGCCTCAAGTTCACCCTGATCATGATCGACCCGAGCCGGGCCGGC ATGATCAGGCACTTCCCCATCCTGACGGAGGCGTTGAGCGACGTCTTCCACGTATACAGTGCCAAGGAGTTCCCG GGCATGCTGCCGAGCAGCAACCTGGCCAAGCGGCTGAAGGAGCAAGGGTGCATCATCTCGATCAAGAAGGGCAAC GAACGATCGAGGAATCCGCGTCTGCTGGACGACCTGTCCGACATGGACGAAGACGGCGGCGACGGTCCACAGCGG AGGCGGCGCATGGCTCGGGATTAG |
Transcript | >Hirsu2|3415 ATGGGCGCCCTGGCGCTACGGTACGCCAAGCTTGCCCTCTTCGTCCCCCTACGGCCGACAGCGTTGACCATGTCT TCGCTTCCAGGCCACTACCCGTACATGACGACCGCCAGCAGTCCAGTCGTCATGAACCAAGCTCCCATGTCCTCC TCCCCCATCAAGATAGAGCCTCGAGGGCATGGTAGCCTTGAAGACATGTCTCTCCCCTGCGAGAACTGGACGCCG GACCAGCACGGTCAACACCACAACCACGGCCATCACTACCACCACCACAGCCATCTTCACAACCACACGCACAAT CACAGCCACAACCACAACCACAACCACAACCACGCTGCTCACGGCTTCGCTGCCGCCCCGGCCCAGCGAGGCCCT CGGCTGCTGCCTCCCCCGGACAGCCTCATGAGCGGGACGCCAAGTACATTACACTCCCATCACCACCCTTCACCC CCGCCCCTGCCGACTCCCTTTGAGGACCGGCTGAGGGTGAGCACTCCGTCCCACACATCCCACCCGCCGTCTCTC CCGCCACCTTCCACCTTCCCGGCCCGCGGCGCAGCAGGCGACTATATCCAGATTCCATCGCAGCAGCGCGGCCGG GAGGCCTGGATACTGCCGTCGACGACGCTTACGGGCTCCGATTCTCTGCCGTCCCCGGCGGCGTCTCAACCGCCC CCAGCACCCCATTTTCAGCCGCCGCAACCGTCGCCGTTGCACAACTACCCACCACGCCTGCAGGGCGCGGAGTTT CATCGTGACGCGGCAGCATCGCGTCGCCTGAACGCTCAGCCGACCGGCCTCCCCCCGAGCCAGGCGGACAGGCCG CCGCCGCCGCCGCCGCCACCGCCACCATCCGCAGCGGCCCGGGCTCGCCAGACGTCGGACGGGACGTCGCTGCCC GGAATGCCCAACCTCTTGGGAGCCGGTCGAGCGCAAGCGCTGAGCGACATCCGATTCCGATTGCGTCTGCGGCAA CAACCGAGGGCGGCGCGGGCCTGCGGGTTCGGCGACCGGGACCGGCGCGTCATCGACCCGCCGCCCATTGTCCAG CTGGTCGTCGAGAGCTCCAGCATGACAGATGACGAGGTCCAGTCGTACCTGCGCTACGAGAGCTACGTCATGAAC TGCGCCATCTGCGACGAGACGGGCACGCGCGATGCGTCCTTCATGCCCGAGGAGTACCAGCATCAACGGCGTTTG ATGGGTTCCCTGGTCGGGACTCCGTTCGTCGGCCAGGATGAGAACGGCGACGAGGGGTGCTTCTTCTGCTTCGGC GATCTATCGTGTCGCACGCCCGGGGCCTTTCGCCTCAAGTTCACCCTGATCATGATCGACCCGAGCCGGGCCGGC ATGATCAGGCACTTCCCCATCCTGACGGAGGCGTTGAGCGACGTCTTCCACGTATACAGTGCCAAGGAGTTCCCG GGCATGCTGCCGAGCAGCAACCTGGCCAAGCGGCTGAAGGAGCAAGGGTGCATCATCTCGATCAAGAAGGGCAAC GAACGATCGAGGAATCCGCGTCTGCTGGACGACCTGTCCGACATGGACGAAGACGGCGGCGACGGTCCACAGCGG AGGCGGCGCATGGCTCGGGATTAG |
Gene | >Hirsu2|3415 ATGGGCGCCCTGGCGCTACGGTACGCCAAGCTTGCCCTCTTCGTCCCCCTACGGCCGACAGCGTTGACCATGTCT TCGCTTCCAGGCCACTACCCGTACATGACGACCGCCAGCAGTCCAGTCGTCATGAACCAAGCTCCCATGTCCTCC TCCCCCATCAAGATAGAGCCTCGAGGGCATGGTAGCCTTGAAGACATGTCTCTCCCCTGCGAGAACTGGACGCCG GACCAGCACGGTCAACACCACAACCACGGCCATCACTACCACCACCACAGCCATCTTCACAACCACACGCACAAT CACAGCCACAACCACAACCACAACCACAACCACGCTGCTCACGGCTTCGCTGCCGCCCCGGCCCAGCGAGGCCCT CGGCTGCTGCCTCCCCCGGACAGCCTCATGAGCGGGACGCCAAGTACATTACACTCCCATCACCACCCTTCACCC CCGCCCCTGCCGACTCCCTTTGAGGACCGGCTGAGGGTGAGCACTCCGTCCCACACATCCCACCCGCCGTCTCTC CCGCCACCTTCCACCTTCCCGGCCCGCGGCGCAGCAGGCGACTATATCCAGATTCCATCGCAGCAGCGCGGCCGG GAGGCCTGGATACTGCCGTCGACGACGCTTACGGGCTCCGATTCTCTGCCGTCCCCGGCGGCGTCTCAACCGCCC CCAGCACCCCATTTTCAGCCGCCGCAACCGTCGCCGTTGCACAACTACCCACCACGCCTGCAGGGCGCGGAGTTT CATCGTGACGCGGCAGCATCGCGTCGCCTGAACGCTCAGCCGACCGGCCTCCCCCCGAGCCAGGCGGACAGGCCG CCGCCGCCGCCGCCGCCACCGCCACCATCCGCAGCGGCCCGGGCTCGCCAGACGTCGGACGGGACGTCGCTGCCC GGAATGCCCAACCTCTTGGGAGCCGGTCGAGCGCAAGCGCTGAGCGACATCCGATTCCGATTGCGTCTGCGGCAA CAACCGAGGGCGGCGCGGGCCTGCGGGTTCGGCGACCGGGACCGGCGCGTCATCGACCCGCCGCCCATTGTCCAG CTGGTCGTCGAGAGCTCCAGCATGACAGATGACGAGGTCCAGTCGTACCTGCGCTACGAGAGCTACGTCATGAAC TGCGCCATCTGCGACGAGACGGGCACGCGCGATGCGTCCTTCATGCCCGAGGAGTACCAGCATCAACGGCGTTTG ATGGGTTCCCTGGTCGGGACTCCGTTCGTCGGCCAGGATGAGAACGGCGACGAGGGGTGCTTCTTCTGCTTCGGC GATCTATCGTGTCGCACGCCCGGGGCCTTTCGCCTCAAGTTCACCCTGATCATGATCGACCCGAGCCGGGCCGGC ATGATCAGGCACTTCCCCATCCTGACGGAGGCGTTGAGCGACGTCTTCCACGTATACAGTGCCAAGGAGTTCCCG GGCATGCTGCCGAGCAGCAACCTGGCCAAGCGGCTGAAGGAGCAAGGGTGCATCATCTCGATCAAGAAGGGCAAC GAACGATCGAGGAATCCGCGTCTGCTGGACGACCTGTCCGACATGGACGAAGACGGCGGCGACGGTCCACAGCGG AGGCGGCGCATGGCTCGGGATTAG |