© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3408 |
| Gene name | |
| Location | Contig_1894:815..1908 |
| Strand | + |
| Gene length (bp) | 1093 |
| Transcript length (bp) | 714 |
| Coding sequence length (bp) | 714 |
| Protein length (aa) | 238 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus|Extracellular | 0.5476 | 0.5469 | 0.7714 | 0.0818 | 0.3294 | 0.0726 | 0.0763 | 0.1886 | 0.2113 | 0.1215 |
| Orthofinder run ID | 4 |
| Orthogroup | 9339 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3408 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3408 MRFCSPRRRRMGFRTRIPPSGPLALEQELSLKGSGQDRPKARGQERHSGVDSDGHIPEAATRATSRDQKASRLRR QSEHPHRGQPDGKLAGLLMLAARVVLRHQSLRRGVHASTPNPASGCRAPLWAPPRRGHSSHVRAGKQSRVAQQTR RCEPTWHAGYAGVRRQGLGWRAGWRPRSRVPAAPPRWMSSAVAQPAVASSSRHGQSVRGPWARQFVSVNVNDFSP RTPAGGRVASRL* |
| Coding | >Hirsu2|3408 ATGAGATTTTGTTCGCCGCGCCGGCGTCGTATGGGATTCCGGACGCGAATCCCACCTTCTGGACCCCTTGCGCTC GAACAGGAACTCAGCCTCAAGGGTTCGGGCCAAGACAGACCCAAGGCGCGCGGTCAAGAGCGGCATTCCGGTGTC GACAGCGATGGCCACATTCCAGAGGCCGCGACTCGCGCGACCAGCAGAGATCAGAAAGCAAGCCGCCTCAGAAGG CAGTCCGAGCATCCTCATCGGGGCCAGCCAGATGGAAAGCTTGCAGGGCTTCTGATGCTTGCGGCCCGTGTCGTC CTGAGGCATCAATCCCTCCGCCGGGGCGTTCACGCGAGCACGCCCAATCCGGCTAGCGGCTGCCGCGCCCCGCTT TGGGCGCCACCTCGCCGGGGCCACAGTTCACATGTCAGAGCCGGCAAGCAATCACGTGTTGCCCAGCAGACGCGA CGATGCGAGCCGACATGGCATGCTGGCTATGCGGGTGTGAGACGGCAGGGTCTTGGCTGGCGTGCTGGCTGGCGC CCCAGAAGCCGAGTCCCTGCAGCTCCTCCTCGCTGGATGTCGTCGGCTGTGGCACAGCCTGCTGTAGCGTCGTCG AGTCGCCACGGCCAGTCTGTCCGTGGGCCATGGGCGCGGCAATTCGTCAGTGTAAACGTCAACGACTTCTCCCCA CGGACCCCAGCCGGCGGCCGAGTGGCAAGCCGGCTATAG |
| Transcript | >Hirsu2|3408 ATGAGATTTTGTTCGCCGCGCCGGCGTCGTATGGGATTCCGGACGCGAATCCCACCTTCTGGACCCCTTGCGCTC GAACAGGAACTCAGCCTCAAGGGTTCGGGCCAAGACAGACCCAAGGCGCGCGGTCAAGAGCGGCATTCCGGTGTC GACAGCGATGGCCACATTCCAGAGGCCGCGACTCGCGCGACCAGCAGAGATCAGAAAGCAAGCCGCCTCAGAAGG CAGTCCGAGCATCCTCATCGGGGCCAGCCAGATGGAAAGCTTGCAGGGCTTCTGATGCTTGCGGCCCGTGTCGTC CTGAGGCATCAATCCCTCCGCCGGGGCGTTCACGCGAGCACGCCCAATCCGGCTAGCGGCTGCCGCGCCCCGCTT TGGGCGCCACCTCGCCGGGGCCACAGTTCACATGTCAGAGCCGGCAAGCAATCACGTGTTGCCCAGCAGACGCGA CGATGCGAGCCGACATGGCATGCTGGCTATGCGGGTGTGAGACGGCAGGGTCTTGGCTGGCGTGCTGGCTGGCGC CCCAGAAGCCGAGTCCCTGCAGCTCCTCCTCGCTGGATGTCGTCGGCTGTGGCACAGCCTGCTGTAGCGTCGTCG AGTCGCCACGGCCAGTCTGTCCGTGGGCCATGGGCGCGGCAATTCGTCAGTGTAAACGTCAACGACTTCTCCCCA CGGACCCCAGCCGGCGGCCGAGTGGCAAGCCGGCTATAG |
| Gene | >Hirsu2|3408 ATGAGATTTTGTTCGCCGCGCCGGCGTCGTATGGGATTCCGGACGCGAATCCCACCTTCTGGACCCCTTGCGCTC GAACAGGAACTCAGCCTCAAGGGTTCGGGCCAAGACAGACCCAAGGCGCGCGGTCAAGAGCGGCATTCCGGTGTC GACAGCGATGGCCACATTCCAGAGGCCGCGACTCGCGCGACCAGCAGAGATCAGAAAGCAAGCCGCCTCAGAAGG CAGTCCGAGCATCCTCATCGGGGCCAGCCAGATGGAAAGCTTGCAGGGCTTCTGATGCTTGCGGCCCGTGTCGTC CTGAGGCATCAATCCCTCCGCCGGGGCGTTCACGCGAGCACGCCCAATCCGGCTAGCGGCTGCCGCGCCCCGCTT TGGGCGCCACCTCGCCGGGGCCACAGTTCACATGTCAGAGCCGGCAAGCAATCACGTGTTGCCCAGCAGACGCGA CGATGCGAGCCGACATGGCATGCTGGCTATGCGGGTATGCGCACTGCCTTGGCTTCCTCGTCTTTTTTTTTTTTT GGTTCTTTTCGTTTCTACTTGGCCCGCTCCCGTCCGGCGCTCAGGGCGCTCCCTAGTGGCAGAGAGGGCCCGTGT CTCTGCCGAGCGAAGTCAGGGACCGTGAAGAAAAAAAAAGGGCCGGCCGGTCGGGCAGCCGGTGTTCCGCCCTGT CCCCGGTACCCCACAGCCGAGACGGAGTAGCCGATGGAGGCAAACGCCGCCGATTTGTCCTTTTTTTTTGGCGGG GAGTGTCTCCGTCGAAGAGAGCAGTTATCCATGTATGCTGCGTGCTGTTGCCGCTGTTGACGAGAGCGGTCTCTT TTTTTTTTTTTTTTTTTTTTTTGCTGTGGCAGCGACAGGTGTGAGACGGCAGGGTCTTGGCTGGCGTGCTGGCTG GCGCCCCAGAAGCCGAGTCCCTGCAGCTCCTCCTCGCTGGATGTCGTCGGCTGTGGCACAGCCTGCTGTAGCGTC GTCGAGTCGCCACGGCCAGTCTGTCCGTGGGCCATGGGCGCGGCAATTCGTCAGTGTAAACGTCAACGACTTCTC CCCACGGACCCCAGCCGGCGGCCGAGTGGCAAGCCGGCTATAG |