© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3402 |
| Gene name | |
| Location | Contig_189:4553..6705 |
| Strand | + |
| Gene length (bp) | 2152 |
| Transcript length (bp) | 2085 |
| Coding sequence length (bp) | 2085 |
| Protein length (aa) | 695 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10744 | Med1 | Mediator of RNA polymerase II transcription subunit 1 | 1.0E-116 | 121 | 544 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003712 | transcription coregulator activity | Yes |
| GO:0016592 | mediator complex | Yes |
| GO:0006357 | regulation of transcription by RNA polymerase II | Yes |
| GO:0009889 | regulation of biosynthetic process | No |
| GO:0050789 | regulation of biological process | No |
| GO:0008150 | biological_process | No |
| GO:0010468 | regulation of gene expression | No |
| GO:2001141 | regulation of RNA biosynthetic process | No |
| GO:0050794 | regulation of cellular process | No |
| GO:0031323 | regulation of cellular metabolic process | No |
| GO:0019219 | regulation of nucleobase-containing compound metabolic process | No |
| GO:0051252 | regulation of RNA metabolic process | No |
| GO:0140110 | transcription regulator activity | No |
| GO:0032991 | protein-containing complex | No |
| GO:0010556 | regulation of macromolecule biosynthetic process | No |
| GO:1903506 | regulation of nucleic acid-templated transcription | No |
| GO:0019222 | regulation of metabolic process | No |
| GO:0031326 | regulation of cellular biosynthetic process | No |
| GO:0065007 | biological regulation | No |
| GO:0140513 | nuclear protein-containing complex | No |
| GO:0051171 | regulation of nitrogen compound metabolic process | No |
| GO:0060255 | regulation of macromolecule metabolic process | No |
| GO:0006355 | regulation of transcription, DNA-templated | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0080090 | regulation of primary metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal | 0.5439 | 0.8279 | 0.0228 | 0.0439 | 0.0813 | 0.0028 | 0.0523 | 0.1022 | 0.0921 | 0.0025 |
| Orthofinder run ID | 4 |
| Orthogroup | 2407 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3402 MSTPTPMKHAPSQQGRTPSQLAAATPPVSTPFSNPAHAAFSPRGPKSSPQQVKKSPATSAMLGQPPMGAFNFDSP STAAAMSALGIGGGFDMGLDNVAVGGLDGLGAALVGEDDKLKRLDTIVKLLSDKKGLVSEAGLERLAQRIGLELL SEEQTTPGGRKTRTLAIAGSAIALDIVLDNNIVQSTSLTYHGSALSVSRHMDAASRILLQDLQLLPGQSPLTKTL DSFASNFERLASLDKLSIVPGLDCHEALAGIYVSLERLYQWDLSKLRQQPGMAARPDEYVTAMAMCARHGVPVMH ARGKVGLALQYWKELRFVSPGPGKMADYVEKQEKVWSLLLGCAPIDGLGLPPVRVTEDWISKDMVKDEPSLEPSG FVLDWQEPENVSLPQSDDNKDAGMDLLQPDLSTTRVPRVMFTVAFDPPVVLPQNDWSRLYMCANVNPPNIELGHR GAPPTYDSLLFPIPSGTRVDPSEPRAISRQRRVRVFPEAGKEAFRQHENTLFIYKPIYSQVVSEMPFSHPRQLVE MLPLLRQYAFLSTLLENSFGSKTTSAVASAAEDPDRDTAATTTTTTTMPNKPPSPTTTSKDELASFMEAGEPAGE VGGPPPPGDKMSLDVILWVHPSPHLQVVFPTGRETANITLKILEGGTVEVLEENIVERAHAGFSKHGLAAALEHM EDLCRWAELIRARLSRASA* |
| Coding | >Hirsu2|3402 ATGTCGACGCCGACGCCCATGAAGCATGCGCCCTCGCAACAGGGCCGCACGCCCTCGCAGCTGGCGGCCGCCACT CCGCCCGTCTCCACGCCCTTCTCGAACCCCGCCCACGCTGCCTTCTCGCCTCGAGGCCCCAAATCGTCGCCCCAG CAGGTCAAGAAGTCGCCCGCCACGTCCGCCATGCTGGGTCAGCCGCCTATGGGCGCCTTCAACTTCGACAGCCCC TCCACTGCTGCCGCCATGAGCGCGCTGGGAATCGGGGGCGGCTTCGACATGGGCCTCGATAATGTCGCTGTTGGG GGGCTGGACGGGCTCGGCGCCGCGCTGGTCGGCGAGGATGATAAGCTCAAGCGCCTCGACACCATCGTGAAACTG CTGAGTGACAAGAAGGGTCTCGTCAGCGAGGCCGGGCTGGAGCGTCTCGCCCAGCGCATCGGCCTCGAGCTGCTT TCCGAGGAGCAGACGACGCCCGGCGGGCGCAAGACGCGCACTCTCGCCATTGCTGGCTCGGCGATTGCGCTGGAT ATAGTACTGGACAACAACATCGTCCAAAGCACTTCGCTCACGTATCACGGCTCGGCACTGTCCGTCTCCAGACAC ATGGACGCAGCGAGCCGCATCCTTCTCCAAGACCTCCAGCTCCTCCCCGGCCAGAGCCCCTTGACCAAGACGCTC GACAGCTTCGCCTCCAACTTTGAGCGTCTGGCCTCGCTGGACAAGCTTAGCATCGTGCCGGGACTCGACTGTCAC GAAGCCCTTGCCGGCATCTATGTCAGCCTCGAAAGGCTGTACCAGTGGGACCTGTCGAAGCTGCGGCAGCAGCCC GGCATGGCGGCGAGGCCAGACGAGTACGTGACGGCCATGGCCATGTGTGCACGACACGGCGTCCCGGTCATGCAT GCGCGAGGAAAGGTCGGCCTGGCCCTGCAGTACTGGAAAGAGTTGCGCTTCGTGTCCCCGGGGCCCGGCAAGATG GCCGACTACGTCGAGAAGCAAGAGAAGGTCTGGTCGCTCCTCCTCGGGTGCGCTCCCATCGACGGTCTCGGCCTG CCGCCGGTGAGGGTGACGGAGGACTGGATTTCCAAAGACATGGTCAAGGACGAGCCATCGCTGGAGCCCAGCGGC TTCGTCCTGGACTGGCAAGAGCCCGAAAACGTCTCCCTGCCGCAGTCCGACGACAACAAGGACGCCGGCATGGAC CTGCTGCAGCCGGATCTCTCGACGACCAGGGTGCCGAGGGTCATGTTCACCGTCGCCTTCGACCCGCCCGTCGTC CTGCCGCAGAACGACTGGTCGCGGCTCTACATGTGCGCCAACGTCAACCCGCCCAACATCGAGCTGGGCCACCGC GGCGCGCCGCCCACGTACGACAGCCTGCTGTTCCCGATCCCGTCCGGCACGCGGGTGGACCCGAGCGAGCCGCGG GCCATCTCGCGCCAGCGTCGCGTCCGCGTCTTTCCCGAGGCCGGCAAGGAGGCCTTCCGGCAGCACGAGAACACG CTCTTCATCTACAAGCCCATCTACTCGCAGGTCGTGTCCGAGATGCCCTTCTCCCACCCCCGCCAGCTGGTCGAG ATGCTGCCGCTGCTGCGGCAGTACGCCTTCCTGTCGACGCTGCTGGAGAACAGCTTCGGGTCCAAGACGACGAGC GCCGTCGCGTCGGCGGCCGAGGACCCGGACCGGGACACGGCAGCGACGACGACGACGACGACGACGATGCCGAAC AAGCCGCCTTCGCCCACGACGACGAGCAAGGACGAGCTGGCCAGCTTTATGGAGGCGGGCGAGCCGGCCGGCGAG GTCGGGGGCCCACCGCCGCCCGGAGACAAGATGAGCCTGGACGTGATCCTCTGGGTCCACCCGTCGCCGCACCTG CAGGTCGTCTTCCCCACCGGCCGCGAGACGGCCAACATCACGCTCAAGATCCTCGAGGGCGGCACGGTCGAGGTG CTCGAGGAGAACATCGTCGAGCGCGCCCACGCCGGCTTCTCCAAGCACGGCCTCGCCGCCGCCCTGGAACACATG GAGGACCTGTGCCGCTGGGCCGAGCTGATCCGGGCGCGCCTGTCCCGGGCGAGCGCCTAA |
| Transcript | >Hirsu2|3402 ATGTCGACGCCGACGCCCATGAAGCATGCGCCCTCGCAACAGGGCCGCACGCCCTCGCAGCTGGCGGCCGCCACT CCGCCCGTCTCCACGCCCTTCTCGAACCCCGCCCACGCTGCCTTCTCGCCTCGAGGCCCCAAATCGTCGCCCCAG CAGGTCAAGAAGTCGCCCGCCACGTCCGCCATGCTGGGTCAGCCGCCTATGGGCGCCTTCAACTTCGACAGCCCC TCCACTGCTGCCGCCATGAGCGCGCTGGGAATCGGGGGCGGCTTCGACATGGGCCTCGATAATGTCGCTGTTGGG GGGCTGGACGGGCTCGGCGCCGCGCTGGTCGGCGAGGATGATAAGCTCAAGCGCCTCGACACCATCGTGAAACTG CTGAGTGACAAGAAGGGTCTCGTCAGCGAGGCCGGGCTGGAGCGTCTCGCCCAGCGCATCGGCCTCGAGCTGCTT TCCGAGGAGCAGACGACGCCCGGCGGGCGCAAGACGCGCACTCTCGCCATTGCTGGCTCGGCGATTGCGCTGGAT ATAGTACTGGACAACAACATCGTCCAAAGCACTTCGCTCACGTATCACGGCTCGGCACTGTCCGTCTCCAGACAC ATGGACGCAGCGAGCCGCATCCTTCTCCAAGACCTCCAGCTCCTCCCCGGCCAGAGCCCCTTGACCAAGACGCTC GACAGCTTCGCCTCCAACTTTGAGCGTCTGGCCTCGCTGGACAAGCTTAGCATCGTGCCGGGACTCGACTGTCAC GAAGCCCTTGCCGGCATCTATGTCAGCCTCGAAAGGCTGTACCAGTGGGACCTGTCGAAGCTGCGGCAGCAGCCC GGCATGGCGGCGAGGCCAGACGAGTACGTGACGGCCATGGCCATGTGTGCACGACACGGCGTCCCGGTCATGCAT GCGCGAGGAAAGGTCGGCCTGGCCCTGCAGTACTGGAAAGAGTTGCGCTTCGTGTCCCCGGGGCCCGGCAAGATG GCCGACTACGTCGAGAAGCAAGAGAAGGTCTGGTCGCTCCTCCTCGGGTGCGCTCCCATCGACGGTCTCGGCCTG CCGCCGGTGAGGGTGACGGAGGACTGGATTTCCAAAGACATGGTCAAGGACGAGCCATCGCTGGAGCCCAGCGGC TTCGTCCTGGACTGGCAAGAGCCCGAAAACGTCTCCCTGCCGCAGTCCGACGACAACAAGGACGCCGGCATGGAC CTGCTGCAGCCGGATCTCTCGACGACCAGGGTGCCGAGGGTCATGTTCACCGTCGCCTTCGACCCGCCCGTCGTC CTGCCGCAGAACGACTGGTCGCGGCTCTACATGTGCGCCAACGTCAACCCGCCCAACATCGAGCTGGGCCACCGC GGCGCGCCGCCCACGTACGACAGCCTGCTGTTCCCGATCCCGTCCGGCACGCGGGTGGACCCGAGCGAGCCGCGG GCCATCTCGCGCCAGCGTCGCGTCCGCGTCTTTCCCGAGGCCGGCAAGGAGGCCTTCCGGCAGCACGAGAACACG CTCTTCATCTACAAGCCCATCTACTCGCAGGTCGTGTCCGAGATGCCCTTCTCCCACCCCCGCCAGCTGGTCGAG ATGCTGCCGCTGCTGCGGCAGTACGCCTTCCTGTCGACGCTGCTGGAGAACAGCTTCGGGTCCAAGACGACGAGC GCCGTCGCGTCGGCGGCCGAGGACCCGGACCGGGACACGGCAGCGACGACGACGACGACGACGACGATGCCGAAC AAGCCGCCTTCGCCCACGACGACGAGCAAGGACGAGCTGGCCAGCTTTATGGAGGCGGGCGAGCCGGCCGGCGAG GTCGGGGGCCCACCGCCGCCCGGAGACAAGATGAGCCTGGACGTGATCCTCTGGGTCCACCCGTCGCCGCACCTG CAGGTCGTCTTCCCCACCGGCCGCGAGACGGCCAACATCACGCTCAAGATCCTCGAGGGCGGCACGGTCGAGGTG CTCGAGGAGAACATCGTCGAGCGCGCCCACGCCGGCTTCTCCAAGCACGGCCTCGCCGCCGCCCTGGAACACATG GAGGACCTGTGCCGCTGGGCCGAGCTGATCCGGGCGCGCCTGTCCCGGGCGAGCGCCTAA |
| Gene | >Hirsu2|3402 ATGTCGACGCCGACGCCCATGAAGCATGCGCCCTCGCAACAGGGCCGCACGCCCTCGCAGCTGGCGGCCGCCACT CCGCCCGTCTCCACGCCCTTCTCGAACCCCGCCCACGCTGCCTTCTCGCCTCGAGGCCCCAAATCGTCGCCCCAG CAGGTCAAGAAGTCGCCCGCCACGTCCGCCATGCTGGGTCAGCCGCCTATGGGCGCCTTCAACTTCGACAGCCCC TCCACTGCTGCCGCCATGAGCGCGCTGGGAATCGGGGGCGGCTTCGACATGGGCCTCGATAATGTCGCTGTTGGG GGGCTGGACGGGCTCGGCGCCGCGCTGGTCGGCGAGGATGATAAGCTCAAGCGCCTCGACACCATCGTGAAACTG CTGAGTGTTGGTGCCCCCCACCAGTCACATGGCCTTGTCCACCGAGCTTCATGCTGACGAACGGATGCTCTAGGA CAAGAAGGGTCTCGTCAGCGAGGCCGGGCTGGAGCGTCTCGCCCAGCGCATCGGCCTCGAGCTGCTTTCCGAGGA GCAGACGACGCCCGGCGGGCGCAAGACGCGCACTCTCGCCATTGCTGGCTCGGCGATTGCGCTGGATATAGTACT GGACAACAACATCGTCCAAAGCACTTCGCTCACGTATCACGGCTCGGCACTGTCCGTCTCCAGACACATGGACGC AGCGAGCCGCATCCTTCTCCAAGACCTCCAGCTCCTCCCCGGCCAGAGCCCCTTGACCAAGACGCTCGACAGCTT CGCCTCCAACTTTGAGCGTCTGGCCTCGCTGGACAAGCTTAGCATCGTGCCGGGACTCGACTGTCACGAAGCCCT TGCCGGCATCTATGTCAGCCTCGAAAGGCTGTACCAGTGGGACCTGTCGAAGCTGCGGCAGCAGCCCGGCATGGC GGCGAGGCCAGACGAGTACGTGACGGCCATGGCCATGTGTGCACGACACGGCGTCCCGGTCATGCATGCGCGAGG AAAGGTCGGCCTGGCCCTGCAGTACTGGAAAGAGTTGCGCTTCGTGTCCCCGGGGCCCGGCAAGATGGCCGACTA CGTCGAGAAGCAAGAGAAGGTCTGGTCGCTCCTCCTCGGGTGCGCTCCCATCGACGGTCTCGGCCTGCCGCCGGT GAGGGTGACGGAGGACTGGATTTCCAAAGACATGGTCAAGGACGAGCCATCGCTGGAGCCCAGCGGCTTCGTCCT GGACTGGCAAGAGCCCGAAAACGTCTCCCTGCCGCAGTCCGACGACAACAAGGACGCCGGCATGGACCTGCTGCA GCCGGATCTCTCGACGACCAGGGTGCCGAGGGTCATGTTCACCGTCGCCTTCGACCCGCCCGTCGTCCTGCCGCA GAACGACTGGTCGCGGCTCTACATGTGCGCCAACGTCAACCCGCCCAACATCGAGCTGGGCCACCGCGGCGCGCC GCCCACGTACGACAGCCTGCTGTTCCCGATCCCGTCCGGCACGCGGGTGGACCCGAGCGAGCCGCGGGCCATCTC GCGCCAGCGTCGCGTCCGCGTCTTTCCCGAGGCCGGCAAGGAGGCCTTCCGGCAGCACGAGAACACGCTCTTCAT CTACAAGCCCATCTACTCGCAGGTCGTGTCCGAGATGCCCTTCTCCCACCCCCGCCAGCTGGTCGAGATGCTGCC GCTGCTGCGGCAGTACGCCTTCCTGTCGACGCTGCTGGAGAACAGCTTCGGGTCCAAGACGACGAGCGCCGTCGC GTCGGCGGCCGAGGACCCGGACCGGGACACGGCAGCGACGACGACGACGACGACGACGATGCCGAACAAGCCGCC TTCGCCCACGACGACGAGCAAGGACGAGCTGGCCAGCTTTATGGAGGCGGGCGAGCCGGCCGGCGAGGTCGGGGG CCCACCGCCGCCCGGAGACAAGATGAGCCTGGACGTGATCCTCTGGGTCCACCCGTCGCCGCACCTGCAGGTCGT CTTCCCCACCGGCCGCGAGACGGCCAACATCACGCTCAAGATCCTCGAGGGCGGCACGGTCGAGGTGCTCGAGGA GAACATCGTCGAGCGCGCCCACGCCGGCTTCTCCAAGCACGGCCTCGCCGCCGCCCTGGAACACATGGAGGACCT GTGCCGCTGGGCCGAGCTGATCCGGGCGCGCCTGTCCCGGGCGAGCGCCTAA |