Protein ID | Hirsu2|3400 |
Gene name | |
Location | Contig_189:1110..1885 |
Strand | - |
Gene length (bp) | 775 |
Transcript length (bp) | 693 |
Coding sequence length (bp) | 693 |
Protein length (aa) | 231 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF06687 | SUR7 | SUR7/PalI family | 2.1E-13 | 11 | 188 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q7SFN5|PALI_NEUCR | pH-response regulator protein palI/prr-5 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=prr-5 PE=3 SV=2 | 13 | 211 | 3.0E-14 |
sp|Q51MB1|PALI_MAGO7 | pH-response regulator protein palI/RIM9 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=RIM9 PE=3 SV=1 | 47 | 211 | 6.0E-10 |
GO Term | Description | Terminal node |
---|---|---|
GO:0005886 | plasma membrane | Yes |
GO:0005575 | cellular_component | No |
GO:0016020 | membrane | No |
GO:0110165 | cellular anatomical entity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Cell membrane|Lysosome/Vacuole | Signal peptide|Transmembrane domain | 0.1466 | 0.1007 | 0.2909 | 0.7201 | 0.1439 | 0.0149 | 0.2717 | 0.641 | 0.5467 | 0.0058 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 109 | 131 | 22 |
3 | 136 | 158 | 22 |
4 | 173 | 195 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 5123 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3400 MGFGTFVHHIGTLLLLVATALLIVVDVTSPVVNRLAIMRVELGNAVEGTDVTFGSFGFCHRGVRDSDRCSHTQIG YDPAGLMRSIDGTDFGDAAQSTSRGLTRVMILHPVATALCFIAFLLCIGTGIVGSIGAAFFSLLSFIVTVVAMIC DFVAFSIIKNNVNDNNRSRAYWSSGIWCMLAAALCTLLAAAVVLLTCCAGRSKKRREAEAKGSFSEGTTPAPRRP FWKRG* |
Coding | >Hirsu2|3400 ATGGGCTTCGGCACCTTCGTCCACCACATCGGCACGCTGCTGCTCCTGGTCGCTACGGCGCTCCTCATCGTCGTC GATGTCACCTCGCCGGTGGTGAACAGGCTGGCCATCATGCGGGTCGAGCTGGGCAATGCGGTCGAGGGAACGGAC GTGACATTTGGATCATTTGGCTTTTGCCATCGCGGAGTCAGGGACTCGGACCGGTGCTCCCACACGCAAATCGGA TACGACCCGGCCGGCCTGATGCGAAGCATCGACGGCACAGACTTTGGCGACGCGGCGCAGAGCACGTCGAGAGGG CTCACGCGCGTCATGATCCTACACCCGGTGGCGACGGCGCTGTGCTTCATCGCCTTTCTGCTGTGCATCGGCACC GGCATCGTCGGCTCGATCGGGGCGGCCTTCTTCTCGCTCCTGTCCTTCATCGTGACGGTGGTGGCCATGATCTGC GACTTTGTCGCGTTCAGCATCATCAAGAACAACGTCAACGACAACAACCGCAGCAGGGCGTACTGGTCGTCGGGC ATCTGGTGCATGCTGGCAGCGGCCCTCTGCACGCTGCTCGCCGCCGCCGTCGTCCTGCTGACCTGCTGCGCCGGC CGATCCAAGAAGCGGCGCGAGGCCGAGGCCAAGGGGTCGTTCAGCGAGGGCACCACCCCCGCCCCCCGACGCCCC TTCTGGAAACGAGGCTAG |
Transcript | >Hirsu2|3400 ATGGGCTTCGGCACCTTCGTCCACCACATCGGCACGCTGCTGCTCCTGGTCGCTACGGCGCTCCTCATCGTCGTC GATGTCACCTCGCCGGTGGTGAACAGGCTGGCCATCATGCGGGTCGAGCTGGGCAATGCGGTCGAGGGAACGGAC GTGACATTTGGATCATTTGGCTTTTGCCATCGCGGAGTCAGGGACTCGGACCGGTGCTCCCACACGCAAATCGGA TACGACCCGGCCGGCCTGATGCGAAGCATCGACGGCACAGACTTTGGCGACGCGGCGCAGAGCACGTCGAGAGGG CTCACGCGCGTCATGATCCTACACCCGGTGGCGACGGCGCTGTGCTTCATCGCCTTTCTGCTGTGCATCGGCACC GGCATCGTCGGCTCGATCGGGGCGGCCTTCTTCTCGCTCCTGTCCTTCATCGTGACGGTGGTGGCCATGATCTGC GACTTTGTCGCGTTCAGCATCATCAAGAACAACGTCAACGACAACAACCGCAGCAGGGCGTACTGGTCGTCGGGC ATCTGGTGCATGCTGGCAGCGGCCCTCTGCACGCTGCTCGCCGCCGCCGTCGTCCTGCTGACCTGCTGCGCCGGC CGATCCAAGAAGCGGCGCGAGGCCGAGGCCAAGGGGTCGTTCAGCGAGGGCACCACCCCCGCCCCCCGACGCCCC TTCTGGAAACGAGGCTAG |
Gene | >Hirsu2|3400 ATGGGCTTCGGCACCTTCGTCCACCACATCGGCACGCTGCTGCTCCTGGTCGCTACGGCGCTCCTCATCGTCGTC GATGTCACCTCGCCGGTGGTGAACAGGCTGGCCATCATGCGGGTCGAGCTGGGCAATGCGGTCGAGGGAACGGAC GTGACATTTGGATCATTTGGCTTTTGCCATCGCGGAGTCAGGTAAGCAGCATCATGTGCGCCCTGTTGTCACCGT TTTGCAGCGTGGGATCCAGTCGAAATGTTGACGCGGGTCCTACCGCAGGGACTCGGACCGGTGCTCCCACACGCA AATCGGATACGACCCGGCCGGCCTGATGCGAAGCATCGACGGCACAGACTTTGGCGACGCGGCGCAGAGCACGTC GAGAGGGCTCACGCGCGTCATGATCCTACACCCGGTGGCGACGGCGCTGTGCTTCATCGCCTTTCTGCTGTGCAT CGGCACCGGCATCGTCGGCTCGATCGGGGCGGCCTTCTTCTCGCTCCTGTCCTTCATCGTGACGGTGGTGGCCAT GATCTGCGACTTTGTCGCGTTCAGCATCATCAAGAACAACGTCAACGACAACAACCGCAGCAGGGCGTACTGGTC GTCGGGCATCTGGTGCATGCTGGCAGCGGCCCTCTGCACGCTGCTCGCCGCCGCCGTCGTCCTGCTGACCTGCTG CGCCGGCCGATCCAAGAAGCGGCGCGAGGCCGAGGCCAAGGGGTCGTTCAGCGAGGGCACCACCCCCGCCCCCCG ACGCCCCTTCTGGAAACGAGGCTAG |