Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3396
Gene name
LocationContig_1887:2002..3156
Strand+
Gene length (bp)1154
Transcript length (bp)1098
Coding sequence length (bp)1098
Protein length (aa) 366

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08551 DUF1751 Eukaryotic integral membrane protein (DUF1751) 5.9E-28 48 146

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q8LF05|RBL19_ARATH Rhomboid-like protein 19 OS=Arabidopsis thaliana GN=RBL19 PE=2 SV=1 41 305 2.0E-25
sp|Q12239|TM115_YEAST Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1 42 304 6.0E-22
sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1 56 305 9.0E-22
sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1 56 305 3.0E-21
sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1 56 332 1.0E-20
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q8LF05|RBL19_ARATH Rhomboid-like protein 19 OS=Arabidopsis thaliana GN=RBL19 PE=2 SV=1 41 305 2.0E-25
sp|Q12239|TM115_YEAST Transmembrane protein 115 homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YOL107W PE=1 SV=1 42 304 6.0E-22
sp|Q12893|TM115_HUMAN Transmembrane protein 115 OS=Homo sapiens GN=TMEM115 PE=1 SV=1 56 305 9.0E-22
sp|A4FUB8|TM115_BOVIN Transmembrane protein 115 OS=Bos taurus GN=TMEM115 PE=2 SV=1 56 305 3.0E-21
sp|Q9WUH1|TM115_MOUSE Transmembrane protein 115 OS=Mus musculus GN=Tmem115 PE=1 SV=1 56 332 1.0E-20
sp|O42826|PDH1_SCHPO Protein pdh1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pdh1 PE=3 SV=1 11 147 4.0E-09
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GO

GO Term Description Terminal node
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum Yes
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0008150 biological_process No
GO:0044425 membrane part No
GO:0006810 transport No
GO:0051179 localization No
GO:0051234 establishment of localization No
GO:0048193 Golgi vesicle transport No
GO:0016192 vesicle-mediated transport No
GO:0005575 cellular_component No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 26 0.5

Transmembrane Domains

Domain # Start End Length
1 13 30 17
2 54 76 22
3 97 119 22
4 134 156 22
5 168 190 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3396
MPPRINIPPFTRAVLVALVFQSVLSAAIRYRQWTGHADIIIPYLTLVPQLSLGYPWTLLTTTLVEGNVFTLAIAA
VTLYHGGRYLERAWSSAELAKFIALVSLLPNVLTFGVMTLFFALTRNESWTLAVISGTVSIQVSFLVAFSQLVPA
HTVTLFRGILSLRVPRFPLLYIGIVTVLSLTPLLSRAAVWLAVFGFLTSWTYLRFYKSVFPDLDSSQPASLRGDA
SETFAFAEFFPGPVKPLVSAFADQVFDVLVALRLCTPFSQADMSAARGERFLQRGTPGSARAEAERRRAIALKAL
DQRLNAATANAALKQASQPPAQPVGPTVQTQPQPSTQTAMTSQPGPILGETKFEPDDDEDQAEKS*
Coding >Hirsu2|3396
ATGCCTCCGCGAATAAACATCCCGCCCTTCACCCGCGCCGTCCTCGTCGCCCTCGTCTTCCAGTCTGTCCTCAGC
GCCGCCATCCGCTACCGCCAATGGACCGGCCACGCCGACATCATCATCCCCTACCTGACCCTCGTCCCCCAGCTC
TCCCTCGGCTATCCGTGGACGCTGCTCACGACGACGCTGGTCGAGGGCAACGTCTTCACCCTCGCCATCGCCGCC
GTCACCCTCTACCACGGCGGCCGCTATCTCGAGCGCGCCTGGTCGTCGGCCGAGCTGGCAAAGTTCATCGCCCTG
GTCTCCCTGCTGCCCAACGTCCTCACCTTTGGCGTCATGACCCTCTTCTTCGCCTTGACGCGGAATGAGAGCTGG
ACCCTTGCCGTCATCTCCGGCACCGTCTCCATCCAGGTCTCCTTCCTCGTCGCCTTCAGCCAGCTCGTCCCGGCG
CACACCGTCACGCTCTTCCGCGGAATCCTTTCGCTCAGGGTCCCCCGCTTTCCGCTGCTCTACATCGGCATCGTG
ACCGTCCTGTCGCTGACGCCACTGCTGTCGCGCGCCGCTGTCTGGCTCGCCGTCTTTGGCTTTCTCACCAGCTGG
ACGTACCTGCGATTCTACAAGTCCGTCTTCCCCGATCTCGACTCGTCGCAGCCGGCGTCCCTGCGCGGCGACGCC
AGCGAGACCTTTGCCTTCGCCGAGTTCTTCCCGGGCCCGGTCAAGCCTCTGGTGTCCGCCTTCGCCGACCAGGTC
TTCGACGTCCTCGTCGCCCTGCGTCTCTGCACGCCCTTCTCGCAGGCCGACATGTCGGCCGCCCGCGGCGAGAGG
TTCTTGCAGCGAGGCACGCCGGGCAGCGCCCGCGCCGAGGCGGAGAGGCGCAGGGCAATCGCGCTCAAGGCGCTG
GACCAGAGGCTCAACGCCGCCACGGCCAACGCGGCCCTCAAGCAGGCCTCGCAACCCCCCGCTCAGCCGGTAGGC
CCGACGGTCCAGACACAGCCGCAGCCCAGCACTCAAACGGCAATGACGTCTCAGCCCGGCCCCATTCTCGGGGAG
ACCAAGTTCGAGCCGGACGACGACGAGGACCAGGCGGAGAAGAGCTGA
Transcript >Hirsu2|3396
ATGCCTCCGCGAATAAACATCCCGCCCTTCACCCGCGCCGTCCTCGTCGCCCTCGTCTTCCAGTCTGTCCTCAGC
GCCGCCATCCGCTACCGCCAATGGACCGGCCACGCCGACATCATCATCCCCTACCTGACCCTCGTCCCCCAGCTC
TCCCTCGGCTATCCGTGGACGCTGCTCACGACGACGCTGGTCGAGGGCAACGTCTTCACCCTCGCCATCGCCGCC
GTCACCCTCTACCACGGCGGCCGCTATCTCGAGCGCGCCTGGTCGTCGGCCGAGCTGGCAAAGTTCATCGCCCTG
GTCTCCCTGCTGCCCAACGTCCTCACCTTTGGCGTCATGACCCTCTTCTTCGCCTTGACGCGGAATGAGAGCTGG
ACCCTTGCCGTCATCTCCGGCACCGTCTCCATCCAGGTCTCCTTCCTCGTCGCCTTCAGCCAGCTCGTCCCGGCG
CACACCGTCACGCTCTTCCGCGGAATCCTTTCGCTCAGGGTCCCCCGCTTTCCGCTGCTCTACATCGGCATCGTG
ACCGTCCTGTCGCTGACGCCACTGCTGTCGCGCGCCGCTGTCTGGCTCGCCGTCTTTGGCTTTCTCACCAGCTGG
ACGTACCTGCGATTCTACAAGTCCGTCTTCCCCGATCTCGACTCGTCGCAGCCGGCGTCCCTGCGCGGCGACGCC
AGCGAGACCTTTGCCTTCGCCGAGTTCTTCCCGGGCCCGGTCAAGCCTCTGGTGTCCGCCTTCGCCGACCAGGTC
TTCGACGTCCTCGTCGCCCTGCGTCTCTGCACGCCCTTCTCGCAGGCCGACATGTCGGCCGCCCGCGGCGAGAGG
TTCTTGCAGCGAGGCACGCCGGGCAGCGCCCGCGCCGAGGCGGAGAGGCGCAGGGCAATCGCGCTCAAGGCGCTG
GACCAGAGGCTCAACGCCGCCACGGCCAACGCGGCCCTCAAGCAGGCCTCGCAACCCCCCGCTCAGCCGGTAGGC
CCGACGGTCCAGACACAGCCGCAGCCCAGCACTCAAACGGCAATGACGTCTCAGCCCGGCCCCATTCTCGGGGAG
ACCAAGTTCGAGCCGGACGACGACGAGGACCAGGCGGAGAAGAGCTGA
Gene >Hirsu2|3396
ATGCCTCCGCGAATAAACATCCCGCCCTTCACCCGCGCCGTCCTCGTCGCCCTCGTCTTCCAGTCTGTCCTCAGC
GCCGCCATCCGCTACCGCCAATGGACCGGCCACGCCGACATCATCATCCCCTACCTGACCCTCGTCCCCCAGCTC
TCCCTCGGCTATCCGTGGACGCTGCTCACGACGACGCTGGTCGAGGGCAACGTCTTCACCCTCGCCATCGCCGCC
GTCACCCTCTACCACGGCGGCCGCTATCTCGAGCGCGCCTGGTCGTCGGCCGAGCTGGCAAAGTTCATCGCCCTG
GTCTCCCTGCTGCCCAACGTCCTCACCTTTGGCGTCATGACCCTCTTCTTCGCCTTGACGCGGAATGAGAGCTGG
ACGTAGGTGCACCCGGGCCCCGTTGTCTGGACCCTGCTGACCGCGACCGGCTCGCCAGCCTTGCCGTCATCTCCG
GCACCGTCTCCATCCAGGTCTCCTTCCTCGTCGCCTTCAGCCAGCTCGTCCCGGCGCACACCGTCACGCTCTTCC
GCGGAATCCTTTCGCTCAGGGTCCCCCGCTTTCCGCTGCTCTACATCGGCATCGTGACCGTCCTGTCGCTGACGC
CACTGCTGTCGCGCGCCGCTGTCTGGCTCGCCGTCTTTGGCTTTCTCACCAGCTGGACGTACCTGCGATTCTACA
AGTCCGTCTTCCCCGATCTCGACTCGTCGCAGCCGGCGTCCCTGCGCGGCGACGCCAGCGAGACCTTTGCCTTCG
CCGAGTTCTTCCCGGGCCCGGTCAAGCCTCTGGTGTCCGCCTTCGCCGACCAGGTCTTCGACGTCCTCGTCGCCC
TGCGTCTCTGCACGCCCTTCTCGCAGGCCGACATGTCGGCCGCCCGCGGCGAGAGGTTCTTGCAGCGAGGCACGC
CGGGCAGCGCCCGCGCCGAGGCGGAGAGGCGCAGGGCAATCGCGCTCAAGGCGCTGGACCAGAGGCTCAACGCCG
CCACGGCCAACGCGGCCCTCAAGCAGGCCTCGCAACCCCCCGCTCAGCCGGTAGGCCCGACGGTCCAGACACAGC
CGCAGCCCAGCACTCAAACGGCAATGACGTCTCAGCCCGGCCCCATTCTCGGGGAGACCAAGTTCGAGCCGGACG
ACGACGAGGACCAGGCGGAGAAGAGCTGA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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