© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3386 |
| Gene name | |
| Location | Contig_188:23739..26087 |
| Strand | + |
| Gene length (bp) | 2348 |
| Transcript length (bp) | 2058 |
| Coding sequence length (bp) | 2058 |
| Protein length (aa) | 686 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.1E-05 | 323 | 383 |
| PF01480 | PWI | PWI domain | 1.2E-07 | 11 | 75 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USP9|YHP4_SCHPO | Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 | 296 | 659 | 3.0E-37 |
| sp|Q9USP9|YHP4_SCHPO | Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 | 2 | 95 | 5.0E-14 |
| sp|Q5T8P6|RBM26_HUMAN | RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 | 6 | 91 | 2.0E-11 |
| sp|Q6NZN0|RBM26_MOUSE | RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 | 11 | 91 | 3.0E-11 |
| sp|Q2T9I5|RBM26_XENLA | RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2 | 6 | 81 | 5.0E-10 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9USP9|YHP4_SCHPO | Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 | 296 | 659 | 3.0E-37 |
| sp|Q9USP9|YHP4_SCHPO | Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 | 2 | 95 | 5.0E-14 |
| sp|Q5T8P6|RBM26_HUMAN | RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 | 6 | 91 | 2.0E-11 |
| sp|Q6NZN0|RBM26_MOUSE | RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 | 11 | 91 | 3.0E-11 |
| sp|Q2T9I5|RBM26_XENLA | RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2 | 6 | 81 | 5.0E-10 |
| sp|Q9P2N5|RBM27_HUMAN | RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2 | 6 | 88 | 1.0E-09 |
| sp|Q5SFM8|RBM27_MOUSE | RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=1 SV=3 | 6 | 88 | 1.0E-09 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006397 | mRNA processing | Yes |
| GO:0003723 | RNA binding | Yes |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0009987 | cellular process | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0008152 | metabolic process | No |
| GO:0016071 | mRNA metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0016070 | RNA metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0006396 | RNA processing | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0090304 | nucleic acid metabolic process | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Nucleus | Nuclear localization signal | 0.4587 | 0.8978 | 0.0396 | 0.0108 | 0.0656 | 0.0019 | 0.0263 | 0.015 | 0.0122 | 0.0005 |
| Orthofinder run ID | 4 |
| Orthogroup | 5121 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3386 MLFPEEDGPLLKAWIVKRIENTSDADSDVLAEYVIALLKHDGTQDSIRKLCEQEIPDFLTEEPKAFLDDVFRAIQ HRSYVPGAPPPPPASGEPSTRPGGPQPAHADATGAQLGSKKRPFADRGDAAEAGEHDQADQRSYKQPRRGGRRGM DDGRGARAPGFRSATMPSLPLGMPHFDPNNPMEAIMQMQAMGIPFAGLPNLPQPALGPRPPRNQAKWKGRCRDFD TKGYCSRGSTCMYDHGNESIYVPPAPARGEEYDPNDAVMYVPTAHGQANSTLFNSPESARGRGGRRGRGNGGRGS RRGGARAPFSADGPVNDRSKSTIVVENIPEENFSDDQVREFFSQFGNVVSVSMQPYKHLAIVKFDKWAAANDAYR SPTVIFNNRFVKVFWYKEVTEGLPPMAPLNGSGDAISVRESEPEVDMEEFQRKQEEAQRQHQERQSKREELARRK QELEKQQQDLLAKHQAETEQLRARLVEKNGGDGPGPGSSSGTDVLRAQLAALEQEAKILGLDPNASDDGGPPGFR GGFRGRRGFRGRPRGRASFRGQGARHAAYAQYSIDNRPKKLAIHGADFTPPERDEMLRHFLLNLGEFESVETAPS VTHVSFQDRKTAERFYASLHGKELPGVDGKLELSWAGAPPLAPTSGLSDDGAGGDDDDDAKDEAPRPVDMDYEVG DDDAWDEGIR* |
| Coding | >Hirsu2|3386 ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTCCGATGCC GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCATCCAG CACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGGCCCG CAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGATGCT GCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGGGATG GACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCCGCAC TTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCCCAAC CTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTTCGAC ACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCCCGCG CCCGCGCGGGGCGAGGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGCCAGGCCAACTCG ACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGCGGTCGCGGCAGC CGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGCACGATTGTGGTC GAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGAAACGTCGTCAGC GTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAACGACGCCTACCGG TCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAGGGCCTGCCTCCG ATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGACATGGAAGAGTTC CAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTGGCGCGACGGAAG CAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTGCGGGCGAGGCTG GTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGGGCCCAGCTGGCC GCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCGCCGGGCTTCCGC GGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGCCAGGGAGCCCGG CACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCCGACTTCACGCCG CCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCG GTGACGCACGTGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCC GGCGTCGACGGCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGAC GGCGCGGGCGGCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGC GACGACGACGCCTGGGACGAGGGCATCCGGTAG |
| Transcript | >Hirsu2|3386 ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTCCGATGCC GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCATCCAG CACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGGCCCG CAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGATGCT GCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGGGATG GACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCCGCAC TTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCCCAAC CTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTTCGAC ACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCCCGCG CCCGCGCGGGGCGAGGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGCCAGGCCAACTCG ACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGCGGTCGCGGCAGC CGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGCACGATTGTGGTC GAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGAAACGTCGTCAGC GTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAACGACGCCTACCGG TCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAGGGCCTGCCTCCG ATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGACATGGAAGAGTTC CAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTGGCGCGACGGAAG CAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTGCGGGCGAGGCTG GTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGGGCCCAGCTGGCC GCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCGCCGGGCTTCCGC GGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGCCAGGGAGCCCGG CACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCCGACTTCACGCCG CCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCG GTGACGCACGTGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCC GGCGTCGACGGCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGAC GGCGCGGGCGGCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGC GACGACGACGCCTGGGACGAGGGCATCCGGTAG |
| Gene | >Hirsu2|3386 ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTGAGTGGCT GGCCCTTTGTCGCTCCCTCTGTCGGGCGACGGCTCTCGCGCCGCGCCTTGCTGACGCGGCTGCAGGTCCGATGCC GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGGTGCGCCGCCCTGCCCCGACACGTCGCTCGCGTCGCCCGCG TCGCCCCCGTGCTGACCCCCCCCGGCTCCCCCGTGCAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCAT CCAGCACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGG CCCGCAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGA TGCTGCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGG GATGGACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCC GCACTTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCC CAACCTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTT CGACACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCC CGCGCCCGCGCGGGGCGAGGGTAAGTCTACGAAGCACCTGCTACTGGTGTTGCTGCTGCTGCTGCTGCTCCTCGT CCTCGAGCTGGACTGACATTGGCCGCAGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGC CAGGCCAACTCGACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGC GGTCGCGGCAGCCGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGC ACGATTGTGGTCGAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGA AACGTCGTCAGCGTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAAC GACGCCTACCGGTCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAG GGCCTGCCTCCGATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGAC ATGGAAGAGTTCCAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTG GCGCGACGGAAGCAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTG CGGGCGAGGCTGGTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGG GCCCAGCTGGCCGCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCG CCGGGCTTCCGCGGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGC CAGGGAGCCCGGCACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCC GACTTCACGCCGCCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGGTGAGTTTTTTTGCGACGACGTTCCCT CGTGACGGCCGCTGACGACGGGGTAGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCGGTGACGCACG TGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCCGGCGTCGACG GCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGACGGCGCGGGCG GCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGCGACGACGACG CCTGGGACGAGGGCATCCGGTAG |