Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3386
Gene name
LocationContig_188:23739..26087
Strand+
Gene length (bp)2348
Transcript length (bp)2058
Coding sequence length (bp)2058
Protein length (aa) 686

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1.1E-05 323 383
PF01480 PWI PWI domain 1.2E-07 11 75

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 296 659 3.0E-37
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 2 95 5.0E-14
sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 6 91 2.0E-11
sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 11 91 3.0E-11
sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2 6 81 5.0E-10
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 296 659 3.0E-37
sp|Q9USP9|YHP4_SCHPO Uncharacterized RNA-binding protein C902.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC902.04 PE=1 SV=1 2 95 5.0E-14
sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3 6 91 2.0E-11
sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2 11 91 3.0E-11
sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2 6 81 5.0E-10
sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2 6 88 1.0E-09
sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=1 SV=3 6 88 1.0E-09
[Show less]

GO

GO Term Description Terminal node
GO:0006397 mRNA processing Yes
GO:0003723 RNA binding Yes
GO:1901360 organic cyclic compound metabolic process No
GO:0046483 heterocycle metabolic process No
GO:0008150 biological_process No
GO:0005488 binding No
GO:0071704 organic substance metabolic process No
GO:0034641 cellular nitrogen compound metabolic process No
GO:0003676 nucleic acid binding No
GO:0006139 nucleobase-containing compound metabolic process No
GO:1901363 heterocyclic compound binding No
GO:0009987 cellular process No
GO:0097159 organic cyclic compound binding No
GO:0008152 metabolic process No
GO:0016071 mRNA metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016070 RNA metabolic process No
GO:0044238 primary metabolic process No
GO:0003674 molecular_function No
GO:0006725 cellular aromatic compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0006396 RNA processing No
GO:0043170 macromolecule metabolic process No
GO:0090304 nucleic acid metabolic process No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Nuclear localization signal 0.4587 0.8978 0.0396 0.0108 0.0656 0.0019 0.0263 0.015 0.0122 0.0005

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup5121
Change Orthofinder run
Species Protein ID
Ophiocordyceps australis 1348a (Ghana) OphauG2|66
Ophiocordyceps australis map64 (Brazil) OphauB2|5934
Ophiocordyceps camponoti-floridani Ophcf2|03957
Ophiocordyceps kimflemingae Ophio5|1735
Ophiocordyceps subramaniannii Hirsu2|3386 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3386
MLFPEEDGPLLKAWIVKRIENTSDADSDVLAEYVIALLKHDGTQDSIRKLCEQEIPDFLTEEPKAFLDDVFRAIQ
HRSYVPGAPPPPPASGEPSTRPGGPQPAHADATGAQLGSKKRPFADRGDAAEAGEHDQADQRSYKQPRRGGRRGM
DDGRGARAPGFRSATMPSLPLGMPHFDPNNPMEAIMQMQAMGIPFAGLPNLPQPALGPRPPRNQAKWKGRCRDFD
TKGYCSRGSTCMYDHGNESIYVPPAPARGEEYDPNDAVMYVPTAHGQANSTLFNSPESARGRGGRRGRGNGGRGS
RRGGARAPFSADGPVNDRSKSTIVVENIPEENFSDDQVREFFSQFGNVVSVSMQPYKHLAIVKFDKWAAANDAYR
SPTVIFNNRFVKVFWYKEVTEGLPPMAPLNGSGDAISVRESEPEVDMEEFQRKQEEAQRQHQERQSKREELARRK
QELEKQQQDLLAKHQAETEQLRARLVEKNGGDGPGPGSSSGTDVLRAQLAALEQEAKILGLDPNASDDGGPPGFR
GGFRGRRGFRGRPRGRASFRGQGARHAAYAQYSIDNRPKKLAIHGADFTPPERDEMLRHFLLNLGEFESVETAPS
VTHVSFQDRKTAERFYASLHGKELPGVDGKLELSWAGAPPLAPTSGLSDDGAGGDDDDDAKDEAPRPVDMDYEVG
DDDAWDEGIR*
Coding >Hirsu2|3386
ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTCCGATGCC
GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC
TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCATCCAG
CACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGGCCCG
CAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGATGCT
GCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGGGATG
GACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCCGCAC
TTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCCCAAC
CTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTTCGAC
ACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCCCGCG
CCCGCGCGGGGCGAGGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGCCAGGCCAACTCG
ACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGCGGTCGCGGCAGC
CGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGCACGATTGTGGTC
GAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGAAACGTCGTCAGC
GTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAACGACGCCTACCGG
TCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAGGGCCTGCCTCCG
ATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGACATGGAAGAGTTC
CAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTGGCGCGACGGAAG
CAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTGCGGGCGAGGCTG
GTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGGGCCCAGCTGGCC
GCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCGCCGGGCTTCCGC
GGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGCCAGGGAGCCCGG
CACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCCGACTTCACGCCG
CCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCG
GTGACGCACGTGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCC
GGCGTCGACGGCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGAC
GGCGCGGGCGGCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGC
GACGACGACGCCTGGGACGAGGGCATCCGGTAG
Transcript >Hirsu2|3386
ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTCCGATGCC
GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC
TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCATCCAG
CACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGGCCCG
CAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGATGCT
GCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGGGATG
GACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCCGCAC
TTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCCCAAC
CTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTTCGAC
ACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCCCGCG
CCCGCGCGGGGCGAGGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGCCAGGCCAACTCG
ACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGCGGTCGCGGCAGC
CGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGCACGATTGTGGTC
GAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGAAACGTCGTCAGC
GTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAACGACGCCTACCGG
TCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAGGGCCTGCCTCCG
ATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGACATGGAAGAGTTC
CAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTGGCGCGACGGAAG
CAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTGCGGGCGAGGCTG
GTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGGGCCCAGCTGGCC
GCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCGCCGGGCTTCCGC
GGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGCCAGGGAGCCCGG
CACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCCGACTTCACGCCG
CCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCG
GTGACGCACGTGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCC
GGCGTCGACGGCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGAC
GGCGCGGGCGGCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGC
GACGACGACGCCTGGGACGAGGGCATCCGGTAG
Gene >Hirsu2|3386
ATGCTGTTCCCCGAGGAGGACGGGCCGCTGCTGAAGGCTTGGATCGTCAAGCGGATTGAGAATACGTGAGTGGCT
GGCCCTTTGTCGCTCCCTCTGTCGGGCGACGGCTCTCGCGCCGCGCCTTGCTGACGCGGCTGCAGGTCCGATGCC
GACTCAGACGTGCTGGCCGAGTACGTGATCGCGCTGCTCAAGCACGACGGCACCCAGGACTCGATCCGCAAGCTC
TGCGAGCAGGAGATCCCCGACTTCCTGACCGAAGGTGCGCCGCCCTGCCCCGACACGTCGCTCGCGTCGCCCGCG
TCGCCCCCGTGCTGACCCCCCCCGGCTCCCCCGTGCAGAGCCCAAGGCCTTTCTGGACGATGTGTTCCGGGCCAT
CCAGCACCGATCCTACGTGCCCGGAGCGCCGCCGCCGCCGCCGGCGTCCGGCGAGCCGTCGACTCGTCCCGGCGG
CCCGCAGCCTGCCCATGCCGACGCGACGGGCGCTCAGCTCGGCTCGAAAAAGAGGCCCTTCGCCGACAGGGGCGA
TGCTGCCGAGGCCGGAGAGCACGACCAGGCCGACCAGCGGTCCTACAAGCAGCCCAGACGAGGCGGGCGACGGGG
GATGGACGACGGTCGCGGCGCCAGGGCGCCGGGCTTTCGCTCCGCCACCATGCCGTCTCTGCCCCTGGGCATGCC
GCACTTCGACCCCAACAATCCGATGGAGGCCATCATGCAGATGCAGGCCATGGGCATCCCCTTCGCCGGCCTGCC
CAACCTCCCTCAGCCGGCCTTGGGCCCGAGGCCGCCCAGAAATCAGGCTAAGTGGAAAGGCCGCTGTCGCGACTT
CGACACCAAGGGCTACTGCTCCCGAGGGAGCACTTGCATGTACGACCACGGCAACGAGTCCATCTACGTCCCTCC
CGCGCCCGCGCGGGGCGAGGGTAAGTCTACGAAGCACCTGCTACTGGTGTTGCTGCTGCTGCTGCTGCTCCTCGT
CCTCGAGCTGGACTGACATTGGCCGCAGAATACGATCCCAACGACGCCGTCATGTACGTGCCGACGGCGCATGGC
CAGGCCAACTCGACCCTCTTCAACAGCCCCGAATCGGCCCGCGGCCGCGGCGGTAGGAGAGGGCGAGGCAACGGC
GGTCGCGGCAGCCGGAGAGGCGGCGCGCGCGCACCGTTTTCCGCCGACGGGCCGGTCAACGATCGCTCCAAGAGC
ACGATTGTGGTCGAGAACATACCCGAGGAAAACTTCTCCGACGACCAGGTGCGCGAATTTTTCTCGCAGTTTGGA
AACGTCGTCAGCGTCTCGATGCAGCCGTACAAGCATCTGGCCATCGTCAAATTCGACAAGTGGGCCGCGGCCAAC
GACGCCTACCGGTCTCCCACCGTCATCTTCAACAACCGGTTCGTTAAGGTCTTTTGGTACAAGGAGGTGACGGAG
GGCCTGCCTCCGATGGCGCCCCTCAACGGGAGCGGTGACGCGATCTCCGTCCGGGAGTCGGAGCCGGAAGTCGAC
ATGGAAGAGTTCCAAAGGAAGCAGGAAGAGGCGCAGCGGCAGCATCAGGAGAGGCAGTCGAAGCGGGAGGAGCTG
GCGCGACGGAAGCAGGAGCTGGAGAAGCAGCAGCAAGACCTGCTGGCAAAGCATCAGGCCGAGACGGAGCAGCTG
CGGGCGAGGCTGGTGGAGAAGAACGGCGGCGACGGCCCCGGCCCCGGCTCCTCGTCGGGCACGGACGTGCTGCGG
GCCCAGCTGGCCGCCCTCGAGCAGGAGGCCAAGATACTGGGCCTCGACCCCAACGCGAGCGACGACGGCGGCCCG
CCGGGCTTCCGCGGGGGGTTCAGGGGCCGGAGGGGCTTCCGCGGCCGGCCGCGCGGCCGCGCCTCGTTCCGGGGC
CAGGGAGCCCGGCACGCCGCCTACGCCCAGTACTCGATCGACAACCGGCCCAAGAAGCTGGCCATCCACGGCGCC
GACTTCACGCCGCCCGAGCGGGACGAGATGCTGCGCCATTTCCTTCTGGTGAGTTTTTTTGCGACGACGTTCCCT
CGTGACGGCCGCTGACGACGGGGTAGAACCTCGGCGAGTTCGAGTCGGTCGAGACGGCGCCGTCGGTGACGCACG
TGTCCTTCCAGGACCGCAAGACGGCCGAGCGCTTCTACGCCAGCCTGCACGGCAAGGAGCTCCCCGGCGTCGACG
GCAAGCTGGAGCTGTCGTGGGCGGGCGCGCCGCCGCTGGCGCCCACGTCGGGCCTGTCCGACGACGGCGCGGGCG
GCGACGACGACGACGACGCCAAGGACGAGGCGCCGCGCCCGGTCGACATGGACTACGAGGTCGGCGACGACGACG
CCTGGGACGAGGGCATCCGGTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail