© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3384 |
| Gene name | |
| Location | Contig_188:15849..16435 |
| Strand | - |
| Gene length (bp) | 586 |
| Transcript length (bp) | 399 |
| Coding sequence length (bp) | 399 |
| Protein length (aa) | 133 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.054 | 0.0458 | 0.9571 | 0.0934 | 0.0538 | 0.0077 | 0.0822 | 0.1342 | 0.0495 | 0.0027 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 2396 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3384 LKQQNQQQQSPPSTMHFNAIVAAAAAFVACSQAAAILPRNKHVADFRLYGLEDCNQKKNLGIWTVIDDDFKPNEC KSLNDDSVKSVRNVDILGNCKLHVYTDAACHHGRKEIGAGQCQSSQHGYKAWSMKCH* |
| Coding | >Hirsu2|3384 CTGAAGCAACAGAACCAGCAGCAGCAGAGCCCTCCATCGACGATGCACTTCAACGCCATCGTCGCAGCCGCTGCC GCCTTCGTCGCCTGCTCTCAGGCTGCAGCCATTCTCCCGCGCAACAAGCACGTCGCCGACTTCCGCCTCTACGGC TTGGAAGACTGCAACCAGAAGAAAAACCTGGGCATCTGGACTGTCATCGACGACGACTTCAAGCCCAACGAGTGC AAGAGCCTCAACGACGATAGCGTCAAGTCCGTCAGGAATGTTGACATCCTCGGCAACTGCAAGCTGCACGTCTAC ACCGATGCCGCCTGCCACCACGGTCGCAAGGAGATCGGCGCCGGCCAATGCCAAAGCTCCCAACACGGCTACAAG GCCTGGTCGATGAAGTGCCACTGA |
| Transcript | >Hirsu2|3384 CTGAAGCAACAGAACCAGCAGCAGCAGAGCCCTCCATCGACGATGCACTTCAACGCCATCGTCGCAGCCGCTGCC GCCTTCGTCGCCTGCTCTCAGGCTGCAGCCATTCTCCCGCGCAACAAGCACGTCGCCGACTTCCGCCTCTACGGC TTGGAAGACTGCAACCAGAAGAAAAACCTGGGCATCTGGACTGTCATCGACGACGACTTCAAGCCCAACGAGTGC AAGAGCCTCAACGACGATAGCGTCAAGTCCGTCAGGAATGTTGACATCCTCGGCAACTGCAAGCTGCACGTCTAC ACCGATGCCGCCTGCCACCACGGTCGCAAGGAGATCGGCGCCGGCCAATGCCAAAGCTCCCAACACGGCTACAAG GCCTGGTCGATGAAGTGCCACTGA |
| Gene | >Hirsu2|3384 CTGAAGCAACAGGTGAGCACCCCATCTGCTGACGCCTGTCAAGCTCCCCCGCTTCTTGGCCCTCTTCCACTGCGA CTCTTCAGCTAACCTCGGGCCGGCATCAGAACCAGCAGCAGCAGAGCCCTCCATCGACGATGCACTTCAACGCCA TCGTCGCAGCCGCTGCCGCCTTCGTCGCCTGCTCTCAGGCTGCAGCCATTCTCCCGCGCAACAAGCACGTCGCCG ACTTCCGCCTCTACGGCTTGGAAGACTGCAACCAGAAGAAAAACCTGGGCATCTGGACTGTCATCGACGACGACT TCAAGCCCAACGAGTGCAAGAGCCTCAACGACGATAGCGTCAAGTCCGTCAGGAATGTTGACATCCTCGGCAACT GCAAGCGTGAGTCTTCTCACCCTGAGTCGTCCCGTCTGCGGCCCCGGGCCCTCGAGTAAAAAGTGAGCTTCCCAA GCTGACCTGCCATCGTCATCCTCCAGTGCACGTCTACACCGATGCCGCCTGCCACCACGGTCGCAAGGAGATCGG CGCCGGCCAATGCCAAAGCTCCCAACACGGCTACAAGGCCTGGTCGATGAAGTGCCACTGA |