Protein ID | Hirsu2|3381 |
Gene name | |
Location | Contig_188:6882..7149 |
Strand | + |
Gene length (bp) | 267 |
Transcript length (bp) | 267 |
Coding sequence length (bp) | 267 |
Protein length (aa) | 89 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide|Transmembrane domain | 0.1578 | 0.12 | 0.4319 | 0.475 | 0.3209 | 0.1503 | 0.7268 | 0.5533 | 0.4516 | 0.0128 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 27 | 49 | 22 |
2 | 62 | 84 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 2394 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3381 MGANLSSTFVPDTSKVVLSEPDRNADIILAIIWVLVLYACAMIFSTCTLIDRWKGPTDKIRVGAGSVVGALVLST AWPVVMLYLIFAN* |
Coding | >Hirsu2|3381 ATGGGTGCCAATCTCTCGTCGACCTTTGTCCCGGACACCTCCAAGGTCGTCCTCAGCGAGCCCGACAGGAACGCG GACATCATTCTCGCCATCATCTGGGTGCTTGTCCTGTACGCATGCGCCATGATCTTCAGTACCTGCACCCTCATC GACCGGTGGAAGGGCCCGACGGACAAGATACGGGTTGGGGCGGGGTCGGTGGTTGGGGCCCTAGTGCTGTCGACC GCATGGCCTGTCGTCATGCTGTACCTCATCTTTGCCAACTGA |
Transcript | >Hirsu2|3381 ATGGGTGCCAATCTCTCGTCGACCTTTGTCCCGGACACCTCCAAGGTCGTCCTCAGCGAGCCCGACAGGAACGCG GACATCATTCTCGCCATCATCTGGGTGCTTGTCCTGTACGCATGCGCCATGATCTTCAGTACCTGCACCCTCATC GACCGGTGGAAGGGCCCGACGGACAAGATACGGGTTGGGGCGGGGTCGGTGGTTGGGGCCCTAGTGCTGTCGACC GCATGGCCTGTCGTCATGCTGTACCTCATCTTTGCCAACTGA |
Gene | >Hirsu2|3381 ATGGGTGCCAATCTCTCGTCGACCTTTGTCCCGGACACCTCCAAGGTCGTCCTCAGCGAGCCCGACAGGAACGCG GACATCATTCTCGCCATCATCTGGGTGCTTGTCCTGTACGCATGCGCCATGATCTTCAGTACCTGCACCCTCATC GACCGGTGGAAGGGCCCGACGGACAAGATACGGGTTGGGGCGGGGTCGGTGGTTGGGGCCCTAGTGCTGTCGACC GCATGGCCTGTCGTCATGCTGTACCTCATCTTTGCCAACTGA |