Protein ID | Hirsu2|3377 |
Gene name | |
Location | Contig_1878:1429..3238 |
Strand | + |
Gene length (bp) | 1809 |
Transcript length (bp) | 1809 |
Coding sequence length (bp) | 1809 |
Protein length (aa) | 603 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF09243 | Rsm22 | Mitochondrial small ribosomal subunit Rsm22 | 1.3E-08 | 265 | 327 |
PF09243 | Rsm22 | Mitochondrial small ribosomal subunit Rsm22 | 2.9E-20 | 353 | 501 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q86ZU7|CO112_SCHPO | Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1102 PE=1 SV=2 | 123 | 508 | 4.0E-32 |
sp|Q9UTM2|CO111_SCHPO | Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2 | 123 | 508 | 5.0E-32 |
sp|P36056|RT22_YEAST | 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM22 PE=1 SV=1 | 127 | 509 | 9.0E-32 |
sp|Q2TBP8|MET17_BOVIN | Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1 | 264 | 510 | 3.0E-10 |
sp|Q9H7H0|MET17_HUMAN | Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1 | 264 | 510 | 3.0E-09 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q86ZU7|CO112_SCHPO | Rsm22-cox11 tandem protein 2, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1102 PE=1 SV=2 | 123 | 508 | 4.0E-32 |
sp|Q9UTM2|CO111_SCHPO | Rsm22-cox11 tandem protein 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox1101 PE=1 SV=2 | 123 | 508 | 5.0E-32 |
sp|P36056|RT22_YEAST | 37S ribosomal protein S22, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RSM22 PE=1 SV=1 | 127 | 509 | 9.0E-32 |
sp|Q2TBP8|MET17_BOVIN | Methyltransferase-like protein 17, mitochondrial OS=Bos taurus GN=METTL17 PE=2 SV=1 | 264 | 510 | 3.0E-10 |
sp|Q9H7H0|MET17_HUMAN | Methyltransferase-like protein 17, mitochondrial OS=Homo sapiens GN=METTL17 PE=1 SV=1 | 264 | 510 | 3.0E-09 |
sp|Q3U2U7|MET17_MOUSE | Methyltransferase-like protein 17, mitochondrial OS=Mus musculus GN=Mettl17 PE=2 SV=2 | 264 | 507 | 1.0E-07 |
GO Term | Description | Terminal node |
---|---|---|
GO:0008168 | methyltransferase activity | Yes |
GO:0006412 | translation | Yes |
GO:0009987 | cellular process | No |
GO:0043043 | peptide biosynthetic process | No |
GO:0016741 | transferase activity, transferring one-carbon groups | No |
GO:0034645 | cellular macromolecule biosynthetic process | No |
GO:0008150 | biological_process | No |
GO:0009058 | biosynthetic process | No |
GO:0044249 | cellular biosynthetic process | No |
GO:0019538 | protein metabolic process | No |
GO:0044271 | cellular nitrogen compound biosynthetic process | No |
GO:0003824 | catalytic activity | No |
GO:0071704 | organic substance metabolic process | No |
GO:0009059 | macromolecule biosynthetic process | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0044260 | cellular macromolecule metabolic process | No |
GO:0043604 | amide biosynthetic process | No |
GO:0008152 | metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0043603 | cellular amide metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:1901566 | organonitrogen compound biosynthetic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:1901576 | organic substance biosynthetic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0006518 | peptide metabolic process | No |
GO:0016740 | transferase activity | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Nucleus | Nuclear localization signal | 0.2944 | 0.5572 | 0.2129 | 0.0196 | 0.2395 | 0.0506 | 0.069 | 0.0216 | 0.0937 | 0.0005 |
Orthofinder run ID | 4 |
Orthogroup | 2392 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3377 LGGAKEGRRKISDEDEYEFDDEYEGEDADGEDGEWALDTEGEKQARFHPYTLQGHFLNADKRIELPQEQLQRPIK ELLERTDISHVKEAAEAAFGGKGLPLSPAAFASRQNKPMLGVGLPPDTKHMTEIQADAFIASFIPPVYASSFRAL REVRKRLGSDWLQSRLKQGKAGELTILDTGGGGAALAAWQQILRAEWALLREKGEVEAEEPPPWKQTAIVASDRL RDRVKHFLPDTTLLPRLPDYQHSGPTRGQRLDAGPTPQPQKAYDIVVASHQLLGKELGHRRQAVLNKLWSVVKKD GGILIVVEKGHPRGFEAMAHARETVLKRFLLPQSGAEDVGGQAADPAFEREREPGHIIAPCTNQETCPMYLTHGE SQGRKDFCHFRQGYVRPKTYATVLGRLKNVTSVEFSFVAIHRGVSKPQPLTGSEATRKAFDSYEHSKQPPDMDQL PRIISRPLKKQRHIIIDVCTPEAKVERWTVPKSYSKLAYHDARRSTWGDLWAMGAKTRMPRKVRHGKVAHEKGKP MLEERDDDEDADERDRDDDDEIIQMLAEKRQEKRNERIKKNWKNIVGQYKRRQAKLKDADRRMVEKEEQAWREKF GR* |
Coding | >Hirsu2|3377 CTGGGGGGGGCAAAAGAAGGGCGCAGGAAAATAAGCGACGAGGACGAGTATGAGTTTGACGACGAGTATGAGGGA GAGGACGCGGACGGTGAAGACGGCGAATGGGCGTTGGACACGGAAGGGGAGAAGCAAGCGAGATTCCACCCCTAC ACGCTGCAGGGCCACTTCCTGAATGCCGACAAGCGAATCGAGCTACCACAAGAGCAATTACAGAGGCCGATCAAG GAGCTACTGGAACGGACCGACATTTCCCATGTCAAGGAAGCGGCCGAGGCGGCCTTTGGCGGCAAGGGTCTGCCA CTGTCGCCGGCGGCGTTTGCCAGTCGCCAAAACAAACCGATGCTCGGAGTCGGGCTTCCTCCCGACACAAAGCAC ATGACCGAGATCCAGGCCGATGCGTTCATCGCCTCCTTCATCCCCCCCGTCTACGCCTCCTCCTTCCGCGCCCTG CGCGAGGTTCGCAAGCGCCTCGGAAGCGACTGGCTGCAATCACGACTGAAGCAGGGGAAGGCCGGCGAGCTGACC ATTCTGGATACTGGCGGCGGCGGAGCCGCTCTGGCGGCCTGGCAGCAGATCCTGCGCGCCGAGTGGGCGCTGCTG CGAGAAAAGGGGGAGGTGGAGGCAGAAGAGCCCCCTCCGTGGAAGCAGACGGCCATCGTCGCGTCCGATCGACTG CGAGATCGTGTGAAACATTTCCTGCCCGACACGACTCTGCTGCCGCGACTGCCCGACTACCAGCACTCCGGGCCG ACGCGGGGGCAGCGCCTCGATGCCGGGCCGACGCCCCAGCCTCAAAAAGCGTACGACATCGTCGTCGCCTCGCAC CAGCTCCTCGGCAAGGAACTGGGCCATCGGCGCCAAGCCGTGCTCAACAAGCTCTGGAGCGTGGTGAAGAAGGAC GGGGGGATCCTGATCGTGGTCGAGAAGGGACACCCACGAGGCTTCGAGGCCATGGCGCACGCGCGCGAGACGGTC CTCAAGCGCTTCCTCCTGCCGCAGTCGGGCGCCGAGGATGTCGGGGGGCAGGCGGCCGACCCGGCCTTCGAGCGC GAGCGGGAGCCCGGCCACATCATCGCGCCGTGCACAAACCAGGAGACGTGCCCCATGTACCTGACCCACGGCGAA AGCCAGGGCCGCAAGGACTTTTGCCACTTCCGCCAGGGCTACGTGCGCCCCAAGACGTACGCGACGGTCCTGGGC AGGCTCAAGAACGTGACGAGCGTCGAGTTCAGCTTCGTGGCCATCCACCGCGGCGTGTCCAAGCCCCAACCGCTC ACCGGGTCGGAGGCGACGCGCAAGGCCTTCGACAGCTACGAGCACTCGAAGCAGCCGCCCGACATGGACCAGCTG CCCAGGATCATCTCGAGGCCGCTGAAGAAGCAGAGGCACATCATCATTGACGTCTGCACGCCCGAGGCCAAGGTT GAGCGGTGGACGGTGCCCAAGAGCTACAGCAAGCTGGCGTATCACGACGCGCGCAGGTCGACGTGGGGCGACCTG TGGGCGATGGGGGCCAAGACGCGCATGCCGCGCAAGGTGCGGCACGGCAAAGTCGCCCACGAGAAAGGAAAGCCG ATGTTGGAGGAGCGGGACGACGACGAGGATGCGGACGAGAGGGACAGAGACGACGACGACGAGATCATTCAGATG CTCGCAGAGAAGCGACAGGAGAAGCGAAACGAGCGGATCAAGAAGAACTGGAAAAATATCGTCGGGCAATACAAG AGACGGCAGGCCAAGCTCAAGGATGCGGACCGGAGGATGGTGGAGAAGGAGGAGCAGGCGTGGCGAGAGAAGTTT GGCAGGTGA |
Transcript | >Hirsu2|3377 CTGGGGGGGGCAAAAGAAGGGCGCAGGAAAATAAGCGACGAGGACGAGTATGAGTTTGACGACGAGTATGAGGGA GAGGACGCGGACGGTGAAGACGGCGAATGGGCGTTGGACACGGAAGGGGAGAAGCAAGCGAGATTCCACCCCTAC ACGCTGCAGGGCCACTTCCTGAATGCCGACAAGCGAATCGAGCTACCACAAGAGCAATTACAGAGGCCGATCAAG GAGCTACTGGAACGGACCGACATTTCCCATGTCAAGGAAGCGGCCGAGGCGGCCTTTGGCGGCAAGGGTCTGCCA CTGTCGCCGGCGGCGTTTGCCAGTCGCCAAAACAAACCGATGCTCGGAGTCGGGCTTCCTCCCGACACAAAGCAC ATGACCGAGATCCAGGCCGATGCGTTCATCGCCTCCTTCATCCCCCCCGTCTACGCCTCCTCCTTCCGCGCCCTG CGCGAGGTTCGCAAGCGCCTCGGAAGCGACTGGCTGCAATCACGACTGAAGCAGGGGAAGGCCGGCGAGCTGACC ATTCTGGATACTGGCGGCGGCGGAGCCGCTCTGGCGGCCTGGCAGCAGATCCTGCGCGCCGAGTGGGCGCTGCTG CGAGAAAAGGGGGAGGTGGAGGCAGAAGAGCCCCCTCCGTGGAAGCAGACGGCCATCGTCGCGTCCGATCGACTG CGAGATCGTGTGAAACATTTCCTGCCCGACACGACTCTGCTGCCGCGACTGCCCGACTACCAGCACTCCGGGCCG ACGCGGGGGCAGCGCCTCGATGCCGGGCCGACGCCCCAGCCTCAAAAAGCGTACGACATCGTCGTCGCCTCGCAC CAGCTCCTCGGCAAGGAACTGGGCCATCGGCGCCAAGCCGTGCTCAACAAGCTCTGGAGCGTGGTGAAGAAGGAC GGGGGGATCCTGATCGTGGTCGAGAAGGGACACCCACGAGGCTTCGAGGCCATGGCGCACGCGCGCGAGACGGTC CTCAAGCGCTTCCTCCTGCCGCAGTCGGGCGCCGAGGATGTCGGGGGGCAGGCGGCCGACCCGGCCTTCGAGCGC GAGCGGGAGCCCGGCCACATCATCGCGCCGTGCACAAACCAGGAGACGTGCCCCATGTACCTGACCCACGGCGAA AGCCAGGGCCGCAAGGACTTTTGCCACTTCCGCCAGGGCTACGTGCGCCCCAAGACGTACGCGACGGTCCTGGGC AGGCTCAAGAACGTGACGAGCGTCGAGTTCAGCTTCGTGGCCATCCACCGCGGCGTGTCCAAGCCCCAACCGCTC ACCGGGTCGGAGGCGACGCGCAAGGCCTTCGACAGCTACGAGCACTCGAAGCAGCCGCCCGACATGGACCAGCTG CCCAGGATCATCTCGAGGCCGCTGAAGAAGCAGAGGCACATCATCATTGACGTCTGCACGCCCGAGGCCAAGGTT GAGCGGTGGACGGTGCCCAAGAGCTACAGCAAGCTGGCGTATCACGACGCGCGCAGGTCGACGTGGGGCGACCTG TGGGCGATGGGGGCCAAGACGCGCATGCCGCGCAAGGTGCGGCACGGCAAAGTCGCCCACGAGAAAGGAAAGCCG ATGTTGGAGGAGCGGGACGACGACGAGGATGCGGACGAGAGGGACAGAGACGACGACGACGAGATCATTCAGATG CTCGCAGAGAAGCGACAGGAGAAGCGAAACGAGCGGATCAAGAAGAACTGGAAAAATATCGTCGGGCAATACAAG AGACGGCAGGCCAAGCTCAAGGATGCGGACCGGAGGATGGTGGAGAAGGAGGAGCAGGCGTGGCGAGAGAAGTTT GGCAGGTGA |
Gene | >Hirsu2|3377 CTGGGGGGGGCAAAAGAAGGGCGCAGGAAAATAAGCGACGAGGACGAGTATGAGTTTGACGACGAGTATGAGGGA GAGGACGCGGACGGTGAAGACGGCGAATGGGCGTTGGACACGGAAGGGGAGAAGCAAGCGAGATTCCACCCCTAC ACGCTGCAGGGCCACTTCCTGAATGCCGACAAGCGAATCGAGCTACCACAAGAGCAATTACAGAGGCCGATCAAG GAGCTACTGGAACGGACCGACATTTCCCATGTCAAGGAAGCGGCCGAGGCGGCCTTTGGCGGCAAGGGTCTGCCA CTGTCGCCGGCGGCGTTTGCCAGTCGCCAAAACAAACCGATGCTCGGAGTCGGGCTTCCTCCCGACACAAAGCAC ATGACCGAGATCCAGGCCGATGCGTTCATCGCCTCCTTCATCCCCCCCGTCTACGCCTCCTCCTTCCGCGCCCTG CGCGAGGTTCGCAAGCGCCTCGGAAGCGACTGGCTGCAATCACGACTGAAGCAGGGGAAGGCCGGCGAGCTGACC ATTCTGGATACTGGCGGCGGCGGAGCCGCTCTGGCGGCCTGGCAGCAGATCCTGCGCGCCGAGTGGGCGCTGCTG CGAGAAAAGGGGGAGGTGGAGGCAGAAGAGCCCCCTCCGTGGAAGCAGACGGCCATCGTCGCGTCCGATCGACTG CGAGATCGTGTGAAACATTTCCTGCCCGACACGACTCTGCTGCCGCGACTGCCCGACTACCAGCACTCCGGGCCG ACGCGGGGGCAGCGCCTCGATGCCGGGCCGACGCCCCAGCCTCAAAAAGCGTACGACATCGTCGTCGCCTCGCAC CAGCTCCTCGGCAAGGAACTGGGCCATCGGCGCCAAGCCGTGCTCAACAAGCTCTGGAGCGTGGTGAAGAAGGAC GGGGGGATCCTGATCGTGGTCGAGAAGGGACACCCACGAGGCTTCGAGGCCATGGCGCACGCGCGCGAGACGGTC CTCAAGCGCTTCCTCCTGCCGCAGTCGGGCGCCGAGGATGTCGGGGGGCAGGCGGCCGACCCGGCCTTCGAGCGC GAGCGGGAGCCCGGCCACATCATCGCGCCGTGCACAAACCAGGAGACGTGCCCCATGTACCTGACCCACGGCGAA AGCCAGGGCCGCAAGGACTTTTGCCACTTCCGCCAGGGCTACGTGCGCCCCAAGACGTACGCGACGGTCCTGGGC AGGCTCAAGAACGTGACGAGCGTCGAGTTCAGCTTCGTGGCCATCCACCGCGGCGTGTCCAAGCCCCAACCGCTC ACCGGGTCGGAGGCGACGCGCAAGGCCTTCGACAGCTACGAGCACTCGAAGCAGCCGCCCGACATGGACCAGCTG CCCAGGATCATCTCGAGGCCGCTGAAGAAGCAGAGGCACATCATCATTGACGTCTGCACGCCCGAGGCCAAGGTT GAGCGGTGGACGGTGCCCAAGAGCTACAGCAAGCTGGCGTATCACGACGCGCGCAGGTCGACGTGGGGCGACCTG TGGGCGATGGGGGCCAAGACGCGCATGCCGCGCAAGGTGCGGCACGGCAAAGTCGCCCACGAGAAAGGAAAGCCG ATGTTGGAGGAGCGGGACGACGACGAGGATGCGGACGAGAGGGACAGAGACGACGACGACGAGATCATTCAGATG CTCGCAGAGAAGCGACAGGAGAAGCGAAACGAGCGGATCAAGAAGAACTGGAAAAATATCGTCGGGCAATACAAG AGACGGCAGGCCAAGCTCAAGGATGCGGACCGGAGGATGGTGGAGAAGGAGGAGCAGGCGTGGCGAGAGAAGTTT GGCAGGTGA |