© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3362 |
| Gene name | |
| Location | Contig_187:24949..25899 |
| Strand | + |
| Gene length (bp) | 950 |
| Transcript length (bp) | 873 |
| Coding sequence length (bp) | 873 |
| Protein length (aa) | 291 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14040 | DNase_NucA_NucB | Deoxyribonuclease NucA/NucB | 7.2E-12 | 54 | 151 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1111 | 0.0882 | 0.9159 | 0.0827 | 0.058 | 0.0084 | 0.1465 | 0.0972 | 0.1153 | 0.003 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999792 |
| Orthofinder run ID | 4 |
| Orthogroup | 7567 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3362 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3362 MQALHLLFLALISRLDLAGALPGTNEPRQATNGPRPGTIIWVCTGNQDPKLDIPEVCTNMCYGAYCRGYGTSLTW DKYAGNSKGTRAKNAGCGDNNHCATDPPVKGQKFQCDEYPFGSTKDADRTDKKPVNRCVPASQNSRQGAKLQQLF NSQGSWKNGLGLNGKPPAQFQQTFSNAGKLRYCGGPSVDCTNDGLQYDRDGKIPGGKKKREVPAPQKTYRLAGGE HITVPEDFEIGHPVLLPRVHNSTLFVEQSENHQEDENAGLEQYDYMTHNLYYDEDHVVEFMGLSI* |
| Coding | >Hirsu2|3362 ATGCAGGCACTTCACCTCCTCTTCCTCGCTCTTATTTCCCGTCTGGACCTCGCCGGGGCCCTACCGGGCACCAAT GAGCCCCGTCAAGCAACTAACGGACCTCGTCCGGGTACAATCATCTGGGTCTGCACCGGTAACCAAGACCCCAAG CTTGATATCCCCGAAGTCTGCACCAACATGTGCTATGGCGCCTACTGCCGAGGCTATGGCACAAGTTTGACCTGG GACAAGTACGCGGGCAACTCCAAGGGTACTCGCGCCAAAAATGCTGGCTGTGGGGATAACAACCATTGCGCCACC GACCCTCCCGTCAAAGGGCAGAAGTTTCAATGCGACGAGTATCCATTTGGCAGTACCAAGGACGCGGACCGTACC GACAAAAAGCCTGTCAACCGATGCGTGCCCGCCAGCCAGAACAGTCGGCAGGGCGCTAAACTTCAGCAGCTCTTC AACTCCCAGGGCTCTTGGAAGAACGGGCTCGGTCTCAACGGAAAGCCGCCGGCGCAGTTTCAACAGACCTTTTCG AATGCCGGCAAGCTCAGGTACTGCGGCGGCCCTTCGGTCGACTGCACGAATGACGGGCTTCAGTACGACAGGGAC GGCAAGATCCCCGGCGGTAAGAAGAAGCGTGAGGTTCCCGCCCCTCAAAAGACGTACCGTCTCGCAGGCGGCGAG CACATCACTGTCCCTGAAGACTTTGAAATTGGCCATCCGGTCTTGCTTCCTCGTGTTCACAACTCGACCTTGTTC GTGGAGCAGAGCGAGAACCACCAGGAAGATGAGAACGCCGGCCTCGAGCAGTACGATTACATGACGCATAACTTG TACTACGACGAGGACCACGTTGTCGAGTTTATGGGACTCTCTATCTAA |
| Transcript | >Hirsu2|3362 ATGCAGGCACTTCACCTCCTCTTCCTCGCTCTTATTTCCCGTCTGGACCTCGCCGGGGCCCTACCGGGCACCAAT GAGCCCCGTCAAGCAACTAACGGACCTCGTCCGGGTACAATCATCTGGGTCTGCACCGGTAACCAAGACCCCAAG CTTGATATCCCCGAAGTCTGCACCAACATGTGCTATGGCGCCTACTGCCGAGGCTATGGCACAAGTTTGACCTGG GACAAGTACGCGGGCAACTCCAAGGGTACTCGCGCCAAAAATGCTGGCTGTGGGGATAACAACCATTGCGCCACC GACCCTCCCGTCAAAGGGCAGAAGTTTCAATGCGACGAGTATCCATTTGGCAGTACCAAGGACGCGGACCGTACC GACAAAAAGCCTGTCAACCGATGCGTGCCCGCCAGCCAGAACAGTCGGCAGGGCGCTAAACTTCAGCAGCTCTTC AACTCCCAGGGCTCTTGGAAGAACGGGCTCGGTCTCAACGGAAAGCCGCCGGCGCAGTTTCAACAGACCTTTTCG AATGCCGGCAAGCTCAGGTACTGCGGCGGCCCTTCGGTCGACTGCACGAATGACGGGCTTCAGTACGACAGGGAC GGCAAGATCCCCGGCGGTAAGAAGAAGCGTGAGGTTCCCGCCCCTCAAAAGACGTACCGTCTCGCAGGCGGCGAG CACATCACTGTCCCTGAAGACTTTGAAATTGGCCATCCGGTCTTGCTTCCTCGTGTTCACAACTCGACCTTGTTC GTGGAGCAGAGCGAGAACCACCAGGAAGATGAGAACGCCGGCCTCGAGCAGTACGATTACATGACGCATAACTTG TACTACGACGAGGACCACGTTGTCGAGTTTATGGGACTCTCTATCTAA |
| Gene | >Hirsu2|3362 ATGCAGGCACTTCACCTCCTCTTCCTCGCTCTTATTTCCCGTCTGGACCTCGCCGGGGCCCTACCGGGCACCAAT GAGCCCCGTCAAGCAACTAACGGACCTCGTCCGGGTACAATCATCTGGGTCTGCACCGGTAACCAAGACCCCAAG CTTGATATCCCCGAAGTCTGCACCAACATGTGCTATGGCGCCTACTGCCGAGGCTATGGCACAAGTTTGACCTGG GACAAGTACGCGGGCAACTCCAAGGGTACTCGCGCCAAAAATGCTGGCTGTGGGGATAACAACCATTGCGCCACC GACCCTCCCGTCAAAGGGCAGAAGTTTCAATGCGACGAGTATCCATTTGGCAGTACCAAGGACGCGGACCGTACC GACAAAAAGCCTGTCAACCGGTATGTGCGCGCTTGGCTCACCTTCGACTCCCATTGATGTAAATGGAATGGCACT CTGATGAAGATGGATTTTGCAGATGCGTGCCCGCCAGCCAGAACAGTCGGCAGGGCGCTAAACTTCAGCAGCTCT TCAACTCCCAGGGCTCTTGGAAGAACGGGCTCGGTCTCAACGGAAAGCCGCCGGCGCAGTTTCAACAGACCTTTT CGAATGCCGGCAAGCTCAGGTACTGCGGCGGCCCTTCGGTCGACTGCACGAATGACGGGCTTCAGTACGACAGGG ACGGCAAGATCCCCGGCGGTAAGAAGAAGCGTGAGGTTCCCGCCCCTCAAAAGACGTACCGTCTCGCAGGCGGCG AGCACATCACTGTCCCTGAAGACTTTGAAATTGGCCATCCGGTCTTGCTTCCTCGTGTTCACAACTCGACCTTGT TCGTGGAGCAGAGCGAGAACCACCAGGAAGATGAGAACGCCGGCCTCGAGCAGTACGATTACATGACGCATAACT TGTACTACGACGAGGACCACGTTGTCGAGTTTATGGGACTCTCTATCTAA |