© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3357 |
| Gene name | |
| Location | Contig_187:13165..14098 |
| Strand | + |
| Gene length (bp) | 933 |
| Transcript length (bp) | 840 |
| Coding sequence length (bp) | 840 |
| Protein length (aa) | 280 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01375 | Enterotoxin_a | Heat-labile enterotoxin alpha chain | 1.4E-24 | 47 | 237 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P43528|E2BA_ECOLX | Heat-labile enterotoxin IIB, A chain OS=Escherichia coli PE=1 SV=2 | 53 | 170 | 2.0E-16 |
| sp|A2PU44|CHELT_VIBCL | NAD(+)--arginine ADP-ribosyltransferase Chelt OS=Vibrio cholerae GN=A51_B1772 PE=1 SV=1 | 53 | 191 | 3.0E-15 |
| sp|P13810|E2AA_ECOLX | Heat-labile enterotoxin IIA, A chain OS=Escherichia coli PE=3 SV=1 | 53 | 170 | 3.0E-14 |
| sp|P01555|CHTA_VIBCH | Cholera enterotoxin subunit A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=ctxA PE=1 SV=1 | 52 | 180 | 5.0E-13 |
| sp|P43530|ELAH_ECOH1 | Heat-labile enterotoxin A chain OS=Escherichia coli O78:H11 (strain H10407 / ETEC) GN=eltA PE=3 SV=1 | 52 | 178 | 4.0E-12 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P43528|E2BA_ECOLX | Heat-labile enterotoxin IIB, A chain OS=Escherichia coli PE=1 SV=2 | 53 | 170 | 2.0E-16 |
| sp|A2PU44|CHELT_VIBCL | NAD(+)--arginine ADP-ribosyltransferase Chelt OS=Vibrio cholerae GN=A51_B1772 PE=1 SV=1 | 53 | 191 | 3.0E-15 |
| sp|P13810|E2AA_ECOLX | Heat-labile enterotoxin IIA, A chain OS=Escherichia coli PE=3 SV=1 | 53 | 170 | 3.0E-14 |
| sp|P01555|CHTA_VIBCH | Cholera enterotoxin subunit A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=ctxA PE=1 SV=1 | 52 | 180 | 5.0E-13 |
| sp|P43530|ELAH_ECOH1 | Heat-labile enterotoxin A chain OS=Escherichia coli O78:H11 (strain H10407 / ETEC) GN=eltA PE=3 SV=1 | 52 | 178 | 4.0E-12 |
| sp|P06717|ELAP_ECOLX | Heat-labile enterotoxin A chain OS=Escherichia coli GN=eltA PE=1 SV=1 | 52 | 178 | 4.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0090729 | toxin activity | Yes |
| GO:0005615 | extracellular space | Yes |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1442 | 0.0628 | 0.9201 | 0.1272 | 0.1072 | 0.0584 | 0.4572 | 0.3287 | 0.283 | 0.0026 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 25 | 0.999609 |
| Orthofinder run ID | 4 |
| Orthogroup | 18 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3357 MYTSSFLQLLSAAACVFLLPGIADAADTGCRKAPTQKWPLLNNTVVPAPKYVFRGDSRSWQAIRDAGGWLPYSID HITPRAFGVYNHEKDIKFAAGKRDTVYVSTTTTFDVAVRYALLNGADTYVYYIHAAPNMFDMNRSLGNESKFWWQ SEYPAMGGIHWSQVVGWVHIDKAFRKKYKSYTVPDCGKEDYANTFFHRLPLIRNGAYDTRRWSKYAASGPQPQLA GFSEYAGEFAKKGYWYEKVQPWSRFLDPSLNRTTEEYALEFMDKTKASRNFGAL* |
| Coding | >Hirsu2|3357 ATGTACACAAGCTCCTTTCTCCAGCTCCTGTCGGCTGCGGCCTGCGTATTTCTGCTGCCCGGCATCGCCGATGCC GCCGACACGGGATGCCGGAAAGCGCCCACGCAGAAGTGGCCGTTGTTGAACAACACAGTCGTCCCGGCGCCCAAA TATGTCTTCCGAGGCGACAGCCGCAGCTGGCAAGCCATACGGGACGCCGGCGGATGGCTTCCGTACTCCATCGAC CACATCACACCCAGGGCCTTTGGCGTCTATAACCACGAGAAAGACATCAAGTTTGCGGCGGGCAAGAGAGATACC GTCTACGTCTCGACCACGACCACGTTCGACGTTGCGGTCCGGTATGCGCTGCTGAACGGGGCCGACACGTACGTC TACTACATCCACGCGGCGCCCAACATGTTCGACATGAACCGCTCGCTCGGCAACGAGAGCAAGTTCTGGTGGCAG TCGGAATACCCGGCCATGGGCGGCATCCACTGGTCGCAGGTGGTCGGCTGGGTTCATATCGACAAGGCGTTCAGG AAGAAGTACAAGTCCTACACGGTGCCAGACTGCGGAAAGGAGGACTACGCCAACACCTTCTTCCACCGCCTGCCG CTGATTCGTAACGGCGCCTATGATACTCGCAGATGGAGCAAATACGCTGCCAGCGGGCCGCAGCCCCAACTCGCT GGCTTCTCCGAGTACGCTGGCGAGTTTGCCAAGAAGGGATACTGGTACGAGAAGGTGCAGCCCTGGAGCCGGTTC CTGGACCCTTCGCTCAATAGGACGACGGAGGAATATGCCCTGGAGTTCATGGACAAGACAAAAGCGAGCCGCAAC TTTGGGGCCCTTTAG |
| Transcript | >Hirsu2|3357 ATGTACACAAGCTCCTTTCTCCAGCTCCTGTCGGCTGCGGCCTGCGTATTTCTGCTGCCCGGCATCGCCGATGCC GCCGACACGGGATGCCGGAAAGCGCCCACGCAGAAGTGGCCGTTGTTGAACAACACAGTCGTCCCGGCGCCCAAA TATGTCTTCCGAGGCGACAGCCGCAGCTGGCAAGCCATACGGGACGCCGGCGGATGGCTTCCGTACTCCATCGAC CACATCACACCCAGGGCCTTTGGCGTCTATAACCACGAGAAAGACATCAAGTTTGCGGCGGGCAAGAGAGATACC GTCTACGTCTCGACCACGACCACGTTCGACGTTGCGGTCCGGTATGCGCTGCTGAACGGGGCCGACACGTACGTC TACTACATCCACGCGGCGCCCAACATGTTCGACATGAACCGCTCGCTCGGCAACGAGAGCAAGTTCTGGTGGCAG TCGGAATACCCGGCCATGGGCGGCATCCACTGGTCGCAGGTGGTCGGCTGGGTTCATATCGACAAGGCGTTCAGG AAGAAGTACAAGTCCTACACGGTGCCAGACTGCGGAAAGGAGGACTACGCCAACACCTTCTTCCACCGCCTGCCG CTGATTCGTAACGGCGCCTATGATACTCGCAGATGGAGCAAATACGCTGCCAGCGGGCCGCAGCCCCAACTCGCT GGCTTCTCCGAGTACGCTGGCGAGTTTGCCAAGAAGGGATACTGGTACGAGAAGGTGCAGCCCTGGAGCCGGTTC CTGGACCCTTCGCTCAATAGGACGACGGAGGAATATGCCCTGGAGTTCATGGACAAGACAAAAGCGAGCCGCAAC TTTGGGGCCCTTTAG |
| Gene | >Hirsu2|3357 ATGTACACAAGCTCCTTTCTCCAGCTCCTGTCGGCTGCGGCCTGCGTATTTCTGCTGCCCGGCATCGCCGATGCC GCCGACACGGGATGCCGGAAAGCGCCCACGCAGAAGTGGCCGTTGTTGAACAACACAGTCGTCCCGGCGCCCAAA TATGTCTTCCGAGGCGACAGCCGCAGCTGGCAAGCCATACGGGACGCCGGCGGATGGCTTCCGTACTCCATCGAC CACATCACACCCAGGGCCTTTGGCGTCTATAACCACGAGAAAGACATCAAGTTTGCGGCGGGCAAGAGAGATACC GTCTACGTCTCGACCACGACCACGTTCGACGTTGCGGTCCGGTATGCGCTGCTGAACGGGGCCGACACGTACGTC TACTACATCCACGCGGCGCCCAACATGTTCGACATGAACCGCTCGCTCGGCAACGAGAGCAAGTTCTGGTGGCAG TCGGAATACCCGGCCATGGGCGGCATCCACTGGTCGCAGGTGGTCGGCTGGGTTCATATCGACAAGGCGTTCAGG AAGAAGTACAAGTCCTACACGGTGCCAGACTGCGGAAAGGAGGACTACGCCAACACCTTCTTCCACCGCCTGCCG CTGATTCGTAACGGCGCCTATGATACTCGCAGATGGAGCAAATACGCTGCCAGCGGGCCGCAGCCCCAACTCGCT GGCTTCTCCGAGTACGCTGGCGAGTTTGCCAAGAAGGGATACTGGTACGAGAAGGTGCAGCCCTGGAGCCGGTTC CTGGACCCTTCGCTCAATAGGACGACGGAGGAATATGCCCTGGAGTTCATGGACAAGACAAAAGCGGTCACTGGC TGGCGAGGTCGCTTTCCGCTATTTAACCTTCCGCGTACAAGAGCGAAGGGAATGCGAAAAGGTGGCCGTTACTCC AGCACCTAGAGCCGCAACTTTGGGGCCCTTTAG |