© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3345 |
| Gene name | |
| Location | Contig_1867:485..1859 |
| Strand | - |
| Gene length (bp) | 1374 |
| Transcript length (bp) | 1224 |
| Coding sequence length (bp) | 1224 |
| Protein length (aa) | 408 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01485 | IBR | IBR domain, a half RING-finger domain | 1.8E-15 | 280 | 385 |
| PF05773 | RWD | RWD domain | 5.5E-12 | 11 | 144 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US46|ITT1_SCHPO | E3 ubiquitin-protein ligase itt1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=itt1 PE=3 SV=1 | 1 | 396 | 1.0E-34 |
| sp|Q9UBS8|RNF14_HUMAN | E3 ubiquitin-protein ligase RNF14 OS=Homo sapiens GN=RNF14 PE=1 SV=1 | 4 | 380 | 3.0E-12 |
| sp|Q9JI90|RNF14_MOUSE | E3 ubiquitin-protein ligase RNF14 OS=Mus musculus GN=Rnf14 PE=1 SV=2 | 4 | 380 | 3.0E-12 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3345 MDSSADDDDPRAVELETLAAIYPEMAMRRDAGRFGFELELPVQPAEPVTVLFPAAPRRDDDQQQQPPAAEPVDSL LVSHLPSLRLRITLPDGYPATRPLEAAVSTTPPWLPASTLAGLERDGLGLWEEAGRDLVAYAYVDHVQRAAEHVF GAVTARGALEVDPAHKLAVLDYDIKAKRAAFEKETFECGICLDPKKGSRCHKMVDCGHIFCLQCLRDFYNDAVEQ GNLSFVRCLTPNCAKERAAAAADGGPARPGRKAKDKALVSPSELLQMGLSEETVKRYVSLRYKTELESDKDTVYC PRQWCSGAARSKKHKKPEGLAFADTSDPESEHEDGGAREEEPEEKAGGGGGGKFNPADLLCVCDDCGFAFCSRCL QTWHGEFVRCAPRRNKDELTEEEKARRTAATT* |
| Coding | >Hirsu2|3345 ATGGACAGCAGCGCAGATGACGACGACCCGCGGGCCGTCGAGCTCGAGACGCTCGCCGCCATCTACCCCGAGATG GCGATGCGGCGCGACGCCGGCCGCTTCGGCTTCGAGCTCGAGCTGCCGGTCCAGCCGGCCGAGCCGGTGACGGTC CTGTTCCCGGCCGCGCCCCGTCGCGACGACGACCAGCAGCAGCAGCCGCCGGCCGCCGAGCCCGTCGACTCGCTC CTCGTCTCCCACCTGCCGAGCCTCCGGCTCCGCATCACGCTGCCGGACGGCTACCCGGCGACGCGTCCGCTGGAG GCGGCCGTCTCGACGACGCCGCCCTGGCTGCCGGCCTCGACCCTGGCCGGCCTCGAGCGTGACGGCCTCGGGCTG TGGGAGGAGGCCGGGCGCGACCTGGTCGCCTACGCCTACGTCGACCACGTCCAGCGGGCGGCCGAGCACGTCTTC GGCGCCGTCACGGCGCGCGGCGCGCTCGAGGTCGACCCGGCCCACAAGCTCGCCGTCCTGGACTACGACATCAAG GCCAAGAGGGCCGCGTTTGAGAAGGAGACGTTTGAGTGCGGCATCTGCCTGGACCCCAAGAAGGGATCTCGTTGC CACAAGATGGTCGACTGCGGCCACATCTTCTGCCTGCAGTGCCTGCGCGACTTTTACAACGACGCCGTCGAGCAG GGAAACCTGTCGTTTGTGCGATGCCTGACGCCCAACTGCGCCAAGGAACGGGCGGCGGCGGCGGCGGACGGCGGG CCTGCGCGCCCGGGCCGCAAGGCCAAGGACAAGGCCCTGGTCAGCCCGAGCGAGCTGCTGCAGATGGGCCTGTCG GAGGAGACGGTCAAGCGGTACGTCTCGCTCAGGTACAAGACGGAACTCGAGTCGGACAAGGACACGGTCTACTGC CCGCGGCAGTGGTGCAGCGGGGCGGCGCGGTCCAAGAAGCACAAGAAGCCCGAGGGCCTGGCGTTTGCCGACACG TCGGACCCCGAGTCGGAGCACGAGGACGGAGGGGCGAGGGAGGAGGAGCCGGAGGAGAAGGCGGGCGGCGGCGGC GGCGGCAAGTTCAATCCGGCGGACCTGCTGTGCGTGTGCGACGACTGCGGCTTCGCCTTCTGCAGCCGCTGCCTG CAGACGTGGCACGGCGAGTTCGTGCGGTGCGCGCCGCGGCGCAACAAGGACGAGCTCACGGAGGAGGAGAAGGCA AGACGTACGGCTGCAACCACATGA |
| Transcript | >Hirsu2|3345 ATGGACAGCAGCGCAGATGACGACGACCCGCGGGCCGTCGAGCTCGAGACGCTCGCCGCCATCTACCCCGAGATG GCGATGCGGCGCGACGCCGGCCGCTTCGGCTTCGAGCTCGAGCTGCCGGTCCAGCCGGCCGAGCCGGTGACGGTC CTGTTCCCGGCCGCGCCCCGTCGCGACGACGACCAGCAGCAGCAGCCGCCGGCCGCCGAGCCCGTCGACTCGCTC CTCGTCTCCCACCTGCCGAGCCTCCGGCTCCGCATCACGCTGCCGGACGGCTACCCGGCGACGCGTCCGCTGGAG GCGGCCGTCTCGACGACGCCGCCCTGGCTGCCGGCCTCGACCCTGGCCGGCCTCGAGCGTGACGGCCTCGGGCTG TGGGAGGAGGCCGGGCGCGACCTGGTCGCCTACGCCTACGTCGACCACGTCCAGCGGGCGGCCGAGCACGTCTTC GGCGCCGTCACGGCGCGCGGCGCGCTCGAGGTCGACCCGGCCCACAAGCTCGCCGTCCTGGACTACGACATCAAG GCCAAGAGGGCCGCGTTTGAGAAGGAGACGTTTGAGTGCGGCATCTGCCTGGACCCCAAGAAGGGATCTCGTTGC CACAAGATGGTCGACTGCGGCCACATCTTCTGCCTGCAGTGCCTGCGCGACTTTTACAACGACGCCGTCGAGCAG GGAAACCTGTCGTTTGTGCGATGCCTGACGCCCAACTGCGCCAAGGAACGGGCGGCGGCGGCGGCGGACGGCGGG CCTGCGCGCCCGGGCCGCAAGGCCAAGGACAAGGCCCTGGTCAGCCCGAGCGAGCTGCTGCAGATGGGCCTGTCG GAGGAGACGGTCAAGCGGTACGTCTCGCTCAGGTACAAGACGGAACTCGAGTCGGACAAGGACACGGTCTACTGC CCGCGGCAGTGGTGCAGCGGGGCGGCGCGGTCCAAGAAGCACAAGAAGCCCGAGGGCCTGGCGTTTGCCGACACG TCGGACCCCGAGTCGGAGCACGAGGACGGAGGGGCGAGGGAGGAGGAGCCGGAGGAGAAGGCGGGCGGCGGCGGC GGCGGCAAGTTCAATCCGGCGGACCTGCTGTGCGTGTGCGACGACTGCGGCTTCGCCTTCTGCAGCCGCTGCCTG CAGACGTGGCACGGCGAGTTCGTGCGGTGCGCGCCGCGGCGCAACAAGGACGAGCTCACGGAGGAGGAGAAGGCA AGACGTACGGCTGCAACCACATGA |
| Gene | >Hirsu2|3345 ATGGACAGCAGCGCAGATGACGACGACCCGCGGGCCGTCGAGCTCGAGACGCTCGCCGCCATCTACCCCGAGATG GCGATGCGGCGCGACGCCGGCCGCTTCGGCTTCGAGCTCGAGCTGCCGGTCCAGCCGGCCGAGCCGGTGACGGTC CTGTTCCCGGCCGCGCCCCGTCGCGACGACGACCAGCAGCAGCAGCCGCCGGCCGCCGAGCCCGTCGACTCGCTC CTCGTCTCCCACCTGCCGAGCCTCCGGCTCCGCATCACGCTGCCGGACGGCTACCCGGCGACGCGTCCGCTGGAG GCGGCCGTCTCGACGACGCCGCCCTGGCTGCCGGCCTCGACCCTGGCCGGCCTCGAGCGTGACGGCCTCGGGCTG TGGGAGGAGGCCGGGCGCGACCTGGTCGCCTACGCCTACGTCGACCACGTCCAGCGGGCGGCCGAGCACGTCTTC GGCGCCGTCACGGCGCGCGGCGCGCTCGAGGTCGACCCGGCCCACAAGCTCGCCGTCCTGGACTACGACATCAAG GCCAAGAGGGCCGCGTTTGAGAAGGAGACGTTTGAGTGCGGCATCTGCCTGGGTGAGTCGAGGGCGGCGGGGACG ACGATGTGGAGGAGCCCCTGTCCCACGCCGTGCGTCGCGAGAAGGGGGCTGACTCGAGCCGGACAGACCCCAAGA AGGGATCTCGTTGCCACAAGATGGTCGACTGCGGCCACATCTTCTGCCTGCAGTGCCTGCGCGACTTTTACAACG ACGCCGTCGAGCAGGGAAACCTGTCGTTTGTGCGATGCCTGACGCCCAACTGCGCCAAGGAACGGGCGGCGGCGG CGGCGGACGGCGGGCCTGCGCGCCCGGGCCGCAAGGCCAAGGACAAGGCCCTGGTCAGCCCGAGCGAGCTGCTGC AGATGGGCCTGTCGGAGGAGACGGTCAAGCGGTACGTCTCGCTCAGGTACAAGACGGAACTCGAGTCGGACAAGG ACACGGTCTACTGCCCGCGGCAGTGGTGCAGCGGGGCGGCGCGGTCCAAGAAGCACAAGAAGCCCGAGGGCCTGG CGTTTGCCGACACGTCGGACCCCGAGTCGGAGCACGAGGACGGAGGGGCGAGGGAGGAGGAGCCGGAGGAGAAGG CGGGCGGCGGCGGCGGCGGCAAGTTCAATCCGGCGGACCTGCTGTGCGTGTGCGACGACTGCGGCTTCGCCTTCT GCAGCCGCTGCCTGCAGACGTGGCACGGCGAGTTCGTGCGGTGCGCGCCGCGGCGCAACAAGGACGAGCTCACGG AGGAGGAGAAGGCGTCGGTCGAGTATCTGCAGCTGCACACGAGCCCGTGCCCGACGTGCGGCGCGCCGGCGCAGA AGACGTACGGCTGCAACCACATGA |