© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3336 |
| Gene name | |
| Location | Contig_1863:677..1063 |
| Strand | + |
| Gene length (bp) | 386 |
| Transcript length (bp) | 327 |
| Coding sequence length (bp) | 327 |
| Protein length (aa) | 109 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.2856 | 0.2777 | 0.5405 | 0.2595 | 0.235 | 0.0326 | 0.2281 | 0.2401 | 0.2538 | 0.0444 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| Orthofinder run ID | 4 |
| Orthogroup | 9319 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3336 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3336 MGSHVAALVAVLCLAAGVRALLRRGPLPGRDTALSGDGQHMWRDTAGGRKTAEDRRRTTTQGRAATKRTTLRTMM MMLTTMTTTSKTELEPEALRHARLRLRTAARAL* |
| Coding | >Hirsu2|3336 ATGGGCAGCCACGTCGCGGCGCTCGTCGCCGTCCTGTGTCTCGCGGCGGGGGTGCGTGCGCTCCTCCGCCGCGGG CCGCTGCCGGGACGCGATACAGCCCTGTCCGGCGACGGCCAGCACATGTGGCGCGACACGGCCGGGGGCCGGAAG ACGGCAGAAGACAGGCGGCGCACAACGACACAAGGCCGTGCCGCCACGAAACGAACGACCTTACGAACGATGATG ATGATGCTTACGACGATGACGACCACATCCAAGACGGAGCTCGAGCCCGAGGCGCTGCGGCACGCCCGCCTCCGC CTCCGGACCGCCGCCCGGGCGCTCTGA |
| Transcript | >Hirsu2|3336 ATGGGCAGCCACGTCGCGGCGCTCGTCGCCGTCCTGTGTCTCGCGGCGGGGGTGCGTGCGCTCCTCCGCCGCGGG CCGCTGCCGGGACGCGATACAGCCCTGTCCGGCGACGGCCAGCACATGTGGCGCGACACGGCCGGGGGCCGGAAG ACGGCAGAAGACAGGCGGCGCACAACGACACAAGGCCGTGCCGCCACGAAACGAACGACCTTACGAACGATGATG ATGATGCTTACGACGATGACGACCACATCCAAGACGGAGCTCGAGCCCGAGGCGCTGCGGCACGCCCGCCTCCGC CTCCGGACCGCCGCCCGGGCGCTCTGA |
| Gene | >Hirsu2|3336 ATGGGCAGCCACGTCGCGGCGCTCGTCGCCGTCCTGTGTCTCGCGGCGGGGGTGCGTGCGCTCCTCCGCCGCGGG CCGCTGCCGGGACGCGATACAGCGTATGTTGCTTGCTCCGCTTCCCTGTCTGGCTTTGCCTGGTTCGCTGACGAC GCCGCAGCCTGTCCGGCGACGGCCAGCACATGTGGCGCGACACGGCCGGGGGCCGGAAGACGGCAGAAGACAGGC GGCGCACAACGACACAAGGCCGTGCCGCCACGAAACGAACGACCTTACGAACGATGATGATGATGCTTACGACGA TGACGACCACATCCAAGACGGAGCTCGAGCCCGAGGCGCTGCGGCACGCCCGCCTCCGCCTCCGGACCGCCGCCC GGGCGCTCTGA |