© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3329 |
| Gene name | |
| Location | Contig_186:26065..27447 |
| Strand | - |
| Gene length (bp) | 1382 |
| Transcript length (bp) | 1314 |
| Coding sequence length (bp) | 1314 |
| Protein length (aa) | 438 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00188 | CAP | Cysteine-rich secretory protein family | 1.3E-16 | 213 | 390 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4B327|PRY1_ARTBC | Probable pathogenesis-related protein ARB_02861 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02861 PE=3 SV=2 | 206 | 396 | 2.0E-09 |
| sp|P35778|VA3_SOLIN | Venom allergen 3 OS=Solenopsis invicta PE=1 SV=2 | 229 | 400 | 2.0E-09 |
| sp|Q4V9Y5|CRLD2_XENTR | Cysteine-rich secretory protein LCCL domain-containing 2 OS=Xenopus tropicalis GN=crispld2 PE=2 SV=1 | 209 | 404 | 1.0E-07 |
| sp|Q00008|PRMS_MAIZE | Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1 | 348 | 396 | 3.0E-07 |
| sp|Q05968|PR1_HORVU | Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1 | 348 | 401 | 7.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|D4B327|PRY1_ARTBC | Probable pathogenesis-related protein ARB_02861 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=ARB_02861 PE=3 SV=2 | 206 | 396 | 2.0E-09 |
| sp|P35778|VA3_SOLIN | Venom allergen 3 OS=Solenopsis invicta PE=1 SV=2 | 229 | 400 | 2.0E-09 |
| sp|Q4V9Y5|CRLD2_XENTR | Cysteine-rich secretory protein LCCL domain-containing 2 OS=Xenopus tropicalis GN=crispld2 PE=2 SV=1 | 209 | 404 | 1.0E-07 |
| sp|Q00008|PRMS_MAIZE | Pathogenesis-related protein PRMS OS=Zea mays GN=PRMS PE=2 SV=1 | 348 | 396 | 3.0E-07 |
| sp|Q05968|PR1_HORVU | Pathogenesis-related protein 1 OS=Hordeum vulgare PE=2 SV=1 | 348 | 401 | 7.0E-07 |
| sp|P35792|PR12_HORVU | Pathogenesis-related protein PRB1-2 OS=Hordeum vulgare PE=2 SV=1 | 348 | 401 | 7.0E-07 |
| sp|P35793|PR13_HORVU | Pathogenesis-related protein PRB1-3 OS=Hordeum vulgare PE=2 SV=1 | 348 | 401 | 8.0E-07 |
| sp|Q40374|PR1_MEDTR | Pathogenesis-related protein PR-1 OS=Medicago truncatula GN=PR-1 PE=2 SV=1 | 347 | 401 | 1.0E-06 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1643 | 0.1031 | 0.928 | 0.0633 | 0.1188 | 0.017 | 0.1591 | 0.1033 | 0.0778 | 0.0015 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 15 | 0.999683 |
| Orthofinder run ID | 4 |
| Orthogroup | 401 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3329 MRLFLFFAALPLAAAIPPKPTRTEGQVIPTGQGGPDGEVAPQDQQRPSNVEPEDQKGPDGNISITLTGREGELPK SITVDGETVEMEQADGADDVTRRWSYVNPNYRGRPNRNDWGWNPEQSYRGRGNQWHNNNRRPANDYGNAGNQWHN NNRRPANDYGNAGNQWYNNNNRRPANDYGNAGNQRGQAREPGEILTFYNSPHIFYEDFKKMTLDLHNKARNKHQN TDSLVWNEELAEDARRYSARCVYEHGHSDVGSGKRWGQNIAYSSWLSGSHNRQIPDEEKTPFYNAEEYLKRSFVH WWDWERFLYNWWNTREASSSLPVNDARGQEIMSWLQRKYPGKQIPPQVGHFTQIVWRETTEVGCAVTVCQPVRGP GVSPNHIGTFTVCNYAPSGNIYMDPPPQNSHRYTLYDTNVAWPQNWTTWWSELDNRVEEGEV* |
| Coding | >Hirsu2|3329 ATGCGCCTGTTTCTGTTTTTCGCGGCGCTCCCGCTTGCGGCGGCCATTCCACCAAAACCAACCCGCACGGAGGGC CAAGTTATCCCCACAGGTCAGGGAGGCCCCGATGGTGAAGTTGCTCCCCAGGATCAGCAACGCCCGTCAAACGTA GAGCCCGAAGATCAGAAAGGCCCGGATGGCAATATTTCCATTACCCTGACTGGACGGGAGGGCGAACTCCCCAAA AGCATTACAGTGGACGGGGAAACGGTGGAGATGGAGCAAGCCGATGGCGCTGACGACGTGACCCGACGATGGTCC TACGTGAACCCCAACTACCGAGGTCGGCCGAACCGCAATGATTGGGGCTGGAACCCCGAGCAATCGTACCGGGGG CGAGGGAACCAGTGGCACAACAACAATAGACGTCCTGCGAATGATTACGGCAACGCGGGAAACCAATGGCACAAC AACAATAGACGTCCTGCGAATGATTACGGCAACGCAGGAAACCAGTGGTACAACAACAACAACAGACGTCCTGCG AATGACTATGGCAACGCGGGAAACCAGCGGGGCCAGGCCCGTGAGCCCGGGGAGATCTTGACCTTTTACAACAGC CCTCACATCTTCTACGAGGACTTCAAAAAAATGACACTCGACTTGCACAACAAGGCCCGGAACAAGCACCAGAAC ACTGATTCTCTCGTCTGGAACGAAGAACTGGCGGAAGACGCACGAAGGTATTCTGCCCGCTGCGTGTACGAACAC GGGCATTCCGACGTTGGGTCAGGGAAACGCTGGGGCCAAAACATTGCCTATTCTTCGTGGTTGAGCGGATCTCAC AATCGCCAAATACCGGATGAGGAGAAAACCCCCTTTTATAATGCTGAAGAATATTTGAAAAGAAGTTTTGTCCAC TGGTGGGATTGGGAAAGGTTTCTTTACAACTGGTGGAACACCCGCGAGGCATCATCGTCACTTCCGGTCAACGAT GCCCGGGGGCAGGAAATCATGAGCTGGCTACAAAGGAAGTATCCGGGGAAACAGATACCACCTCAGGTCGGACAT TTCACTCAGATTGTCTGGAGAGAAACCACCGAGGTCGGCTGCGCCGTTACTGTATGCCAGCCAGTGCGTGGCCCT GGGGTTTCACCCAACCATATCGGCACGTTTACTGTCTGCAATTATGCCCCATCAGGCAATATCTATATGGATCCC CCACCCCAAAATTCTCATAGGTACACCTTGTACGATACAAATGTTGCATGGCCACAGAACTGGACGACATGGTGG TCTGAACTTGATAATAGGGTTGAAGAGGGAGAAGTATAG |
| Transcript | >Hirsu2|3329 ATGCGCCTGTTTCTGTTTTTCGCGGCGCTCCCGCTTGCGGCGGCCATTCCACCAAAACCAACCCGCACGGAGGGC CAAGTTATCCCCACAGGTCAGGGAGGCCCCGATGGTGAAGTTGCTCCCCAGGATCAGCAACGCCCGTCAAACGTA GAGCCCGAAGATCAGAAAGGCCCGGATGGCAATATTTCCATTACCCTGACTGGACGGGAGGGCGAACTCCCCAAA AGCATTACAGTGGACGGGGAAACGGTGGAGATGGAGCAAGCCGATGGCGCTGACGACGTGACCCGACGATGGTCC TACGTGAACCCCAACTACCGAGGTCGGCCGAACCGCAATGATTGGGGCTGGAACCCCGAGCAATCGTACCGGGGG CGAGGGAACCAGTGGCACAACAACAATAGACGTCCTGCGAATGATTACGGCAACGCGGGAAACCAATGGCACAAC AACAATAGACGTCCTGCGAATGATTACGGCAACGCAGGAAACCAGTGGTACAACAACAACAACAGACGTCCTGCG AATGACTATGGCAACGCGGGAAACCAGCGGGGCCAGGCCCGTGAGCCCGGGGAGATCTTGACCTTTTACAACAGC CCTCACATCTTCTACGAGGACTTCAAAAAAATGACACTCGACTTGCACAACAAGGCCCGGAACAAGCACCAGAAC ACTGATTCTCTCGTCTGGAACGAAGAACTGGCGGAAGACGCACGAAGGTATTCTGCCCGCTGCGTGTACGAACAC GGGCATTCCGACGTTGGGTCAGGGAAACGCTGGGGCCAAAACATTGCCTATTCTTCGTGGTTGAGCGGATCTCAC AATCGCCAAATACCGGATGAGGAGAAAACCCCCTTTTATAATGCTGAAGAATATTTGAAAAGAAGTTTTGTCCAC TGGTGGGATTGGGAAAGGTTTCTTTACAACTGGTGGAACACCCGCGAGGCATCATCGTCACTTCCGGTCAACGAT GCCCGGGGGCAGGAAATCATGAGCTGGCTACAAAGGAAGTATCCGGGGAAACAGATACCACCTCAGGTCGGACAT TTCACTCAGATTGTCTGGAGAGAAACCACCGAGGTCGGCTGCGCCGTTACTGTATGCCAGCCAGTGCGTGGCCCT GGGGTTTCACCCAACCATATCGGCACGTTTACTGTCTGCAATTATGCCCCATCAGGCAATATCTATATGGATCCC CCACCCCAAAATTCTCATAGGTACACCTTGTACGATACAAATGTTGCATGGCCACAGAACTGGACGACATGGTGG TCTGAACTTGATAATAGGGTTGAAGAGGGAGAAGTATAG |
| Gene | >Hirsu2|3329 ATGCGCCTGTTTCTGTTTTTCGCGGCGCTCCCGCTTGCGGCGGCCATTCCACCAAAACCAACCCGCACGGAGGGC CAAGTTATCCCCACAGGTCAGGGAGGCCCCGATGGTGAAGTTGCTCCCCAGGATCAGCAACGCCCGTCAAACGTA GAGCCCGAAGATCAGAAAGGCCCGGATGGCAATATTTCCATTACCCTGACTGGACGGGAGGGCGAACTCCCCAAA AGCATTACAGTGGACGGGGAAACGGTGGAGATGGAGCAAGCCGATGGCGCTGACGACGTGACCCGACGATGGTCC TACGTGAACCCCAACTACCGAGGTCGGCCGAACCGCAATGATTGGGGCTGGAACCCCGAGCAATCGTACCGGGGG CGAGGGAACCAGTGGCACAACAACAATAGACGTCCTGCGAATGATTACGGCAACGCGGGAAACCAATGGCACAAC AACAATAGACGTCCTGCGAATGATTACGGCAACGCAGGAAACCAGTGGTACAACAACAACAACAGACGTCCTGCG AATGACTATGGCAACGCGGGAAACCAGCGGGGCCAGGCCCGTGAGCCCGGGGAGATCTTGACCTTTTACAACAGC CCTCACATCTTCTACGAGGACTTCAAAAAAATGACACTCGACTTGCACAACAAGGCCCGGAACAAGCACCAGAAC ACTGATTCTCTCGTCTGGAACGAAGAACTGGCGGAAGACGCACGAAGGTATTCTGCCCGCTGCGTGTACGAACAC GGGCATTCCGACGTTGGGTCAGGGAAACGCTGGGGCCAAAACATTGCCTATTCTTCGTGGTTGAGCGGATCTCAC AATCGCCAAATACCGGATGAGGAGAAAACCCCCTTTTATAATGCTGAAGAATATTTGAAAAGAAGTTTTGTCCAC TGGTGGGATTGGGAAAGGTTTCTTTACAACTGGTGGAACACCCGCGAGGCATCATCGTCACTTCCGGTCAACGAT GCCCGGGGGCAGGAAATCATGAGCTGGCTACAAAGGAAGTATCCGGGGAAACAGATACCACCTCAGGTCGGACAT TTCACTCAGATTGTCTGGAGAGAAACCACCGAGGTCGGCTGCGCCGTTACTGTATGCCAGCCAGTGCGTGGCCCT GGGGTTTCACCCAACCATATCGGCACGTTTACTGTCTGCAATTATGCCCCATCAGGTGAGCTTAAGTATCCCCTG GCGAGCGAATCAGCTTGCCTCCTCACTTGTGCTAATGAAACGGTGCAGGCAATATCTATATGGATCCCCCACCCC AAAATTCTCATAGGTACACCTTGTACGATACAAATGTTGCATGGCCACAGAACTGGACGACATGGTGGTCTGAAC TTGATAATAGGGTTGAAGAGGGAGAAGTATAG |