© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3325 |
| Gene name | |
| Location | Contig_186:10957..11584 |
| Strand | - |
| Gene length (bp) | 627 |
| Transcript length (bp) | 564 |
| Coding sequence length (bp) | 564 |
| Protein length (aa) | 188 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00550 | PP-binding | Phosphopantetheine attachment site | 1.4E-05 | 113 | 175 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9Y7D5|LOVF_ASPTE | Lovastatin diketide synthase LovF OS=Aspergillus terreus GN=lovF PE=1 SV=1 | 56 | 180 | 3.0E-09 |
| sp|Q55CN6|PKS3_DICDI | Probable polyketide synthase 3 OS=Dictyostelium discoideum GN=pks3 PE=3 SV=1 | 88 | 173 | 8.0E-08 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.7537 | 0.2877 | 0.4352 | 0.1851 | 0.0787 | 0.0045 | 0.0199 | 0.1236 | 0.0605 | 0.1301 |
| Orthofinder run ID | 4 |
| Orthogroup | 1 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3325 MNEFGLTIIDSQHFFHLLQSALASTADSKNSLPGQLLVGACSGGIMQAAQKVNPDAHFSWLQTFASFAYLRELDV QDEGATEVADKTEDQKLLDQLGRSKSMDEANDTVQQILLSKISKIVSVPVSDINTAKPVHTYGVDSLVAVELRNW LAMELKSDMSIFDLTSNAPISDVCRKIASRSHLILKN* |
| Coding | >Hirsu2|3325 ATGAATGAATTTGGCTTGACCATAATCGACAGCCAGCACTTCTTCCACCTCCTCCAATCCGCACTGGCCAGCACC GCCGACAGCAAGAACTCTTTGCCAGGGCAGCTGCTAGTCGGGGCCTGCAGCGGTGGTATCATGCAGGCCGCGCAG AAAGTGAATCCCGATGCTCACTTTTCCTGGCTCCAGACCTTCGCGTCCTTTGCCTATCTTCGGGAGCTAGACGTC CAAGACGAAGGCGCGACAGAGGTTGCCGACAAGACCGAGGACCAAAAGCTCCTCGACCAGCTCGGGCGATCCAAA TCGATGGACGAGGCCAATGACACGGTGCAGCAGATCTTACTATCGAAGATCTCCAAGATCGTGTCGGTGCCGGTC TCCGACATCAACACGGCCAAGCCGGTTCATACCTACGGCGTCGACAGTCTCGTGGCCGTGGAGCTACGCAATTGG CTGGCAATGGAGCTCAAGAGTGATATGAGTATTTTTGACCTGACAAGCAACGCCCCGATCAGCGATGTTTGCAGG AAGATTGCAAGCCGATCACATTTAATTCTGAAGAACTGA |
| Transcript | >Hirsu2|3325 ATGAATGAATTTGGCTTGACCATAATCGACAGCCAGCACTTCTTCCACCTCCTCCAATCCGCACTGGCCAGCACC GCCGACAGCAAGAACTCTTTGCCAGGGCAGCTGCTAGTCGGGGCCTGCAGCGGTGGTATCATGCAGGCCGCGCAG AAAGTGAATCCCGATGCTCACTTTTCCTGGCTCCAGACCTTCGCGTCCTTTGCCTATCTTCGGGAGCTAGACGTC CAAGACGAAGGCGCGACAGAGGTTGCCGACAAGACCGAGGACCAAAAGCTCCTCGACCAGCTCGGGCGATCCAAA TCGATGGACGAGGCCAATGACACGGTGCAGCAGATCTTACTATCGAAGATCTCCAAGATCGTGTCGGTGCCGGTC TCCGACATCAACACGGCCAAGCCGGTTCATACCTACGGCGTCGACAGTCTCGTGGCCGTGGAGCTACGCAATTGG CTGGCAATGGAGCTCAAGAGTGATATGAGTATTTTTGACCTGACAAGCAACGCCCCGATCAGCGATGTTTGCAGG AAGATTGCAAGCCGATCACATTTAATTCTGAAGAACTGA |
| Gene | >Hirsu2|3325 ATGAATGAATTTGGCTTGGTAAGTTGAGCCTTCCTGCCTTCTACTTGGAAGCTTCAGGAAATATTCTAACAAGCC CTTCAGACCATAATCGACAGCCAGCACTTCTTCCACCTCCTCCAATCCGCACTGGCCAGCACCGCCGACAGCAAG AACTCTTTGCCAGGGCAGCTGCTAGTCGGGGCCTGCAGCGGTGGTATCATGCAGGCCGCGCAGAAAGTGAATCCC GATGCTCACTTTTCCTGGCTCCAGACCTTCGCGTCCTTTGCCTATCTTCGGGAGCTAGACGTCCAAGACGAAGGC GCGACAGAGGTTGCCGACAAGACCGAGGACCAAAAGCTCCTCGACCAGCTCGGGCGATCCAAATCGATGGACGAG GCCAATGACACGGTGCAGCAGATCTTACTATCGAAGATCTCCAAGATCGTGTCGGTGCCGGTCTCCGACATCAAC ACGGCCAAGCCGGTTCATACCTACGGCGTCGACAGTCTCGTGGCCGTGGAGCTACGCAATTGGCTGGCAATGGAG CTCAAGAGTGATATGAGTATTTTTGACCTGACAAGCAACGCCCCGATCAGCGATGTTTGCAGGAAGATTGCAAGC CGATCACATTTAATTCTGAAGAACTGA |