© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3320 |
| Gene name | |
| Location | Contig_1859:412..2267 |
| Strand | + |
| Gene length (bp) | 1855 |
| Transcript length (bp) | 1488 |
| Coding sequence length (bp) | 1488 |
| Protein length (aa) | 496 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06814 | Lung_7-TM_R | Lung seven transmembrane receptor | 9.7E-70 | 122 | 411 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A6ZZS6|PTM1_YEAS7 | Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PTM1 PE=3 SV=1 | 4 | 463 | 3.0E-86 |
| sp|P32857|PTM1_YEAST | Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTM1 PE=1 SV=2 | 4 | 463 | 4.0E-86 |
| sp|O13989|YEG7_SCHPO | Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2 | 9 | 429 | 7.0E-65 |
| sp|P38745|YHB7_YEAST | Uncharacterized membrane protein YHL071W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1 SV=1 | 2 | 452 | 2.0E-64 |
| sp|Q9Y7Y9|YOD2_SCHPO | Uncharacterized membrane protein C18A7.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18A7.02c PE=3 SV=1 | 9 | 410 | 7.0E-32 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|A6ZZS6|PTM1_YEAS7 | Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PTM1 PE=3 SV=1 | 4 | 463 | 3.0E-86 |
| sp|P32857|PTM1_YEAST | Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTM1 PE=1 SV=2 | 4 | 463 | 4.0E-86 |
| sp|O13989|YEG7_SCHPO | Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2 | 9 | 429 | 7.0E-65 |
| sp|P38745|YHB7_YEAST | Uncharacterized membrane protein YHL071W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1 SV=1 | 2 | 452 | 2.0E-64 |
| sp|Q9Y7Y9|YOD2_SCHPO | Uncharacterized membrane protein C18A7.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC18A7.02c PE=3 SV=1 | 9 | 410 | 7.0E-32 |
| sp|Q28EW0|TM87A_XENTR | Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1 | 141 | 482 | 6.0E-29 |
| sp|Q8BKU8|TM87B_MOUSE | Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1 | 115 | 443 | 3.0E-23 |
| sp|Q96K49|TM87B_HUMAN | Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1 | 150 | 443 | 2.0E-22 |
| sp|Q8NBN3|TM87A_HUMAN | Transmembrane protein 87A OS=Homo sapiens GN=TMEM87A PE=1 SV=3 | 140 | 416 | 7.0E-19 |
| sp|Q8BXN9|TM87A_MOUSE | Transmembrane protein 87A OS=Mus musculus GN=Tmem87a PE=1 SV=1 | 140 | 416 | 1.0E-18 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 161 | 183 | 22 |
| 2 | 195 | 214 | 19 |
| 3 | 229 | 251 | 22 |
| 4 | 272 | 291 | 19 |
| 5 | 301 | 323 | 22 |
| 6 | 344 | 366 | 22 |
| 7 | 381 | 403 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3320 MDQSEPNRQYCSGMYSRTTWGGPVEPFILVKFLNSSVPEGSDPITSLIIFEWTDKKLVGVPDPNFPGMQLEICHE QSVQKGRCNNTDVGQFIISPNATESSNALIVTKAIHLKQSSPIRYAIKTTGYYCVVTDVFTAKTYSLVTEFRNAY GELPATQIPKLPFYGGMSILYALVCVFWGFLYYQHRHDILAVQNFITAILMFLVVEMLMTWGFYDYQNRLGSNAG SKVFLIVVGILNAARNSFSFFLLLIVCMGYGVVKPTLGRTMLHVRWLAAAHFVFGLVYAITSLLISPESAGPFVL LIVLPLAGTLTAFYVWTLNSLSFTLKDLRERKQHAKEAMYKKLWWAILVSVLVIFGFFFFNSFTFASVNDPDFVP FHWKTRWFVLDGWLNIVYFADVVWIAYIWRPTANNRRFAMSDEIAQDDDGNFEIGDIGVLDDSDDEEEARGGKHQ VHPPPTTGFTRAEPVLGTQRRSEERSFVRQSLERETVFAIGEEGD* |
| Coding | >Hirsu2|3320 ATGGACCAGTCAGAGCCCAATCGCCAATATTGCTCCGGCATGTACAGTCGGACCACATGGGGAGGGCCAGTCGAG CCCTTTATCCTCGTCAAGTTTCTCAACTCCAGTGTCCCCGAGGGCAGCGATCCCATAACGAGCTTGATCATCTTT GAATGGACCGACAAGAAGTTGGTCGGCGTCCCGGATCCAAATTTCCCCGGCATGCAACTCGAGATCTGCCACGAG CAATCCGTCCAGAAAGGTCGCTGCAATAACACAGATGTTGGCCAATTCATAATTTCCCCCAACGCTACCGAAAGT TCCAATGCCCTGATCGTCACCAAAGCGATCCACCTCAAGCAATCCAGCCCCATCCGCTACGCCATAAAAACAACC GGCTATTACTGCGTTGTCACCGATGTCTTCACTGCAAAAACCTACAGCCTGGTGACGGAGTTCCGGAACGCCTAC GGCGAACTTCCGGCAACACAAATTCCCAAGCTGCCCTTTTATGGCGGCATGTCTATTCTCTACGCCCTCGTCTGT GTCTTCTGGGGTTTCCTCTATTATCAGCATCGCCACGACATTTTGGCTGTGCAAAATTTCATTACCGCTATCCTG ATGTTCCTTGTGGTGGAAATGCTCATGACCTGGGGCTTCTATGACTATCAAAACCGCCTTGGATCGAACGCGGGT TCGAAAGTCTTTCTCATTGTCGTTGGCATACTCAATGCGGCGCGAAACTCATTCTCTTTCTTCCTCCTGCTCATT GTCTGTATGGGCTACGGCGTTGTAAAGCCAACCCTCGGCCGGACTATGTTACACGTCCGCTGGCTCGCAGCAGCA CATTTCGTTTTCGGGCTCGTCTACGCTATAACCAGTCTTCTCATCTCGCCTGAAAGTGCAGGACCCTTTGTTCTG CTGATTGTGCTCCCCTTGGCCGGAACGCTGACCGCCTTTTATGTTTGGACACTCAACTCCCTCAGCTTCACGCTC AAGGATCTGAGAGAGCGGAAGCAGCACGCAAAGGAGGCCATGTATAAGAAGCTCTGGTGGGCCATACTCGTTAGC GTCCTGGTCATTTTCGGCTTCTTCTTCTTCAACAGCTTCACTTTTGCCTCGGTGAACGACCCGGACTTCGTTCCA TTCCACTGGAAAACCAGATGGTTCGTCCTGGACGGCTGGCTGAACATTGTCTATTTCGCCGATGTGGTCTGGATC GCCTACATCTGGCGCCCGACAGCGAACAACCGGCGATTCGCTATGAGCGATGAAATTGCGCAGGACGACGATGGA AACTTTGAGATTGGGGACATTGGCGTCCTCGACGACTCGGATGACGAGGAGGAAGCTCGGGGCGGGAAACACCAG GTCCACCCGCCTCCCACCACGGGCTTTACTCGCGCAGAGCCGGTGCTCGGCACCCAGCGGCGATCTGAGGAGCGA AGCTTCGTGCGGCAGTCACTGGAGAGAGAGACGGTTTTTGCCATCGGCGAAGAGGGAGACTGA |
| Transcript | >Hirsu2|3320 ATGGACCAGTCAGAGCCCAATCGCCAATATTGCTCCGGCATGTACAGTCGGACCACATGGGGAGGGCCAGTCGAG CCCTTTATCCTCGTCAAGTTTCTCAACTCCAGTGTCCCCGAGGGCAGCGATCCCATAACGAGCTTGATCATCTTT GAATGGACCGACAAGAAGTTGGTCGGCGTCCCGGATCCAAATTTCCCCGGCATGCAACTCGAGATCTGCCACGAG CAATCCGTCCAGAAAGGTCGCTGCAATAACACAGATGTTGGCCAATTCATAATTTCCCCCAACGCTACCGAAAGT TCCAATGCCCTGATCGTCACCAAAGCGATCCACCTCAAGCAATCCAGCCCCATCCGCTACGCCATAAAAACAACC GGCTATTACTGCGTTGTCACCGATGTCTTCACTGCAAAAACCTACAGCCTGGTGACGGAGTTCCGGAACGCCTAC GGCGAACTTCCGGCAACACAAATTCCCAAGCTGCCCTTTTATGGCGGCATGTCTATTCTCTACGCCCTCGTCTGT GTCTTCTGGGGTTTCCTCTATTATCAGCATCGCCACGACATTTTGGCTGTGCAAAATTTCATTACCGCTATCCTG ATGTTCCTTGTGGTGGAAATGCTCATGACCTGGGGCTTCTATGACTATCAAAACCGCCTTGGATCGAACGCGGGT TCGAAAGTCTTTCTCATTGTCGTTGGCATACTCAATGCGGCGCGAAACTCATTCTCTTTCTTCCTCCTGCTCATT GTCTGTATGGGCTACGGCGTTGTAAAGCCAACCCTCGGCCGGACTATGTTACACGTCCGCTGGCTCGCAGCAGCA CATTTCGTTTTCGGGCTCGTCTACGCTATAACCAGTCTTCTCATCTCGCCTGAAAGTGCAGGACCCTTTGTTCTG CTGATTGTGCTCCCCTTGGCCGGAACGCTGACCGCCTTTTATGTTTGGACACTCAACTCCCTCAGCTTCACGCTC AAGGATCTGAGAGAGCGGAAGCAGCACGCAAAGGAGGCCATGTATAAGAAGCTCTGGTGGGCCATACTCGTTAGC GTCCTGGTCATTTTCGGCTTCTTCTTCTTCAACAGCTTCACTTTTGCCTCGGTGAACGACCCGGACTTCGTTCCA TTCCACTGGAAAACCAGATGGTTCGTCCTGGACGGCTGGCTGAACATTGTCTATTTCGCCGATGTGGTCTGGATC GCCTACATCTGGCGCCCGACAGCGAACAACCGGCGATTCGCTATGAGCGATGAAATTGCGCAGGACGACGATGGA AACTTTGAGATTGGGGACATTGGCGTCCTCGACGACTCGGATGACGAGGAGGAAGCTCGGGGCGGGAAACACCAG GTCCACCCGCCTCCCACCACGGGCTTTACTCGCGCAGAGCCGGTGCTCGGCACCCAGCGGCGATCTGAGGAGCGA AGCTTCGTGCGGCAGTCACTGGAGAGAGAGACGGTTTTTGCCATCGGCGAAGAGGGAGACTGA |
| Gene | >Hirsu2|3320 ATGGTATGCGCCTTACCTGACCTCCTTCGTCGTGTAGTTACAAGCTGACGAATTCGCATTGTAGGACCAGTCAGA GCCCAATCGCCAATATTGCTCCGGTCTACTCCCCTGAAGCAGACGAAGCAGACGCGGCTTCTCTACGACGCCTCG GTACTGACTGTTGTGGCAGGCATGTACAGTCGGACCACATGGGGAGGGCCAGTCGAGCCCTTTATCCTCGTCAAG TTTCTCAACTCCAGTGTCCCCGAGGGCAGCGATCCCATAACGAGCTTGATCATCTTTGAATGGACCGACAAGAAG TTGGTCGGCGTCCCGGATCCAAATTTCCCCGGCATGGTAAGGTTCTCTCTCCTTTGAGACATTCGAGACGCAACC TCCGACTCAGTGTATACCACAGCAACTCGAGATCTGCCACGAGCAATCCGTCCAGAAAGGTCGCTGCAATAACAC AGATGTTGGCCAATTCATAATTTCCCCCAACGCTACCGAAAGTTCCAATGCCCTGATCGTCACCAAAGCGATCCA CCTCAAGCAATCCAGCCCCATCCGCTACGCCATAAAAACAACCGGCTATTACTGCGTTGTCACCGATGTCTTCAC TGCAAAAACCTACAGCCTGGTGACGGAGTTCCGGAACGCCTACGGCGAACTTCCGGCAACACAAATTCCCAAGCT GCCCTTTTATGGCGGCATGTCTATTCTCTACGCCCTCGTCTGTGTCTTCTGGGGTTTCCTCTATTATCAGCATCG CCACGACATTTGTGAGGCGGCGTCCACCCCAATCATTCGTCTGTTTCGCACCGCTGACCAAGGAATGACAGTGGC TGTGCAAAATTTCATTACCGCTATCCTGATGTTCCTTGTGGTGGAAATGCTCATGACCTGGGGCTTCTATGGTAC GTCGTTCTCCCCCGTTCGCACTCTCTCGGATCTTTTCCTCACGCTGACGCTGCTCCCAGACTATCAAAACCGCCT TGGATCGAACGCGGGTTCGAAAGTCTTTCTCATTGTCGTTGGCATACTCAATGCGGCGCGAAACTCATTCTCTTT CTTCCTCCTGCTCATTGTCTGTATGGGCTACGGCGTTGTAAAGCCAACCCTCGGCCGGACTATGTTACACGTCCG CTGGCTCGCAGCAGCACATTTCGTTTTCGGGCTCGTCTACGCTATAACCAGTCTTCTCATCTCGCCTGAAAGTGC AGGTAAGCAGAGCCCCGCCAGCTTGAAGAGGCGTCAGGTGCTTACCATGACAGGACCCTTTGTTCTGCTGATTGT GCTCCCCTTGGCCGGAACGCTGACCGCCTTTTATGTTTGGACACTCAACTCCCTCAGCTTCACGCTCAAGGATCT GAGAGAGCGGAAGCAGCACGCAAAGGAGGCCATGTATAAGAAGCTCTGGTGGGCCATACTCGTTAGCGTCCTGGT CATTTTCGGCTTCTTCTTCTTCAACAGCTTCACTTTTGCCTCGGTGAACGACCCGGACTTCGTTCCATTCCACTG GAAAACCAGATGGTTCGTCCTGGACGGCTGGCTGAACATTGTCTATTTCGCCGATGTGGTCTGGATCGCCTACAT CTGGCGCCCGACAGCGAACAACCGGCGATTCGCTATGAGCGATGAAATTGCGCAGGACGACGATGGAAACTTTGA GATTGGGGACATTGGCGTCCTCGACGACTCGGATGACGAGGAGGAAGCTCGGGGCGGGAAACACCAGGTCCACCC GCCTCCCACCACGGGCTTTACTCGCGCAGAGCCGGTGCTCGGCACCCAGCGGCGATCTGAGGAGCGAAGCTTCGT GCGGCAGTCACTGGAGAGAGAGACGGTTTTTGCCATCGGCGAAGAGGGAGACTGA |