Protein ID | Hirsu2|3274 |
Gene name | |
Location | Contig_184:17066..18459 |
Strand | - |
Gene length (bp) | 1393 |
Transcript length (bp) | 1299 |
Coding sequence length (bp) | 1299 |
Protein length (aa) | 433 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1864 | 0.061 | 0.9608 | 0.093 | 0.0762 | 0.0245 | 0.197 | 0.1752 | 0.2115 | 0.0022 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999692 |
Orthofinder run ID | 4 |
Orthogroup | 725 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3274 MKSLSLGLAGLLLQEPLFALAAKVPVRAIGENAAVDGNRVSWTDKDGWEDGFGCPAARVLSVSADKKYGACCEEG NALRGSRETEFHCCADGHDVAGSLDVGFTCCPTGHAYDGTVCKQQCVDGKVLVDGRCGCPDGQVEGPDGTCKPHA ESTCSSGLETGKCYMFKGETGRRLAFKNKQYSEAQPNKEVMPGKFQLCLDEKCTPKQPVKPSNEVYIKDIHGSPP EALDAGQWLNNAAGGAHIGKTADFTKAGKFSFTKWPCGKYCLGGFERGLGPACPAADPSMTFYTAATEACVEFEL IEVPCKIRDDANSCLWRSGPDPCCGRVDCSARAGAPTQDPPFCPAQHGTTRTAADGAAFDVLCGRYYSTGGRKEL KGVAGPEACQQLCAADGKCQGANWCFSKKYCSHHYEWKDQPKEGNIDWVTFRPSKER* |
Coding | >Hirsu2|3274 ATGAAGAGCCTCTCGCTGGGCCTCGCAGGTCTTCTCCTGCAGGAGCCACTGTTCGCCCTGGCGGCCAAGGTCCCC GTGCGGGCGATCGGCGAAAACGCGGCCGTCGACGGCAACCGCGTCTCGTGGACCGACAAGGACGGGTGGGAAGAC GGCTTCGGCTGTCCGGCCGCACGCGTGCTCAGCGTCAGCGCGGACAAGAAGTACGGCGCGTGCTGCGAGGAGGGC AACGCGCTGCGCGGCTCGCGCGAGACCGAGTTCCACTGCTGCGCCGACGGGCACGACGTGGCCGGCTCGCTCGAC GTCGGCTTCACCTGCTGTCCGACGGGCCATGCCTACGACGGCACCGTCTGCAAGCAGCAGTGCGTCGACGGCAAG GTCCTGGTCGATGGCAGATGCGGCTGTCCCGACGGCCAGGTCGAGGGCCCCGACGGGACCTGCAAGCCTCACGCT GAGAGCACTTGCTCGTCCGGTCTGGAGACTGGGAAGTGCTACATGTTTAAAGGAGAGACCGGGCGAAGGCTGGCC TTTAAAAACAAACAGTACTCGGAAGCCCAGCCGAACAAGGAGGTGATGCCCGGCAAGTTCCAGCTCTGCCTAGAC GAGAAATGCACGCCGAAGCAGCCGGTGAAGCCGAGCAACGAGGTATACATCAAGGACATACACGGGTCGCCGCCC GAGGCCCTCGACGCCGGCCAGTGGCTCAACAACGCCGCGGGCGGCGCCCACATCGGCAAGACGGCCGACTTCACC AAGGCCGGCAAGTTCTCCTTCACCAAGTGGCCGTGCGGCAAGTACTGCCTCGGCGGCTTCGAAAGGGGCCTGGGG CCGGCGTGCCCGGCCGCGGACCCGTCCATGACCTTCTACACCGCCGCCACCGAGGCCTGCGTCGAGTTCGAGCTC ATCGAGGTGCCGTGCAAGATCCGCGACGACGCCAACAGCTGCCTGTGGAGGAGCGGCCCGGACCCGTGCTGCGGC CGCGTCGACTGCAGCGCCCGCGCCGGGGCGCCGACGCAGGACCCGCCGTTCTGCCCGGCGCAGCACGGCACCACC CGGACCGCCGCCGACGGGGCGGCCTTCGACGTCCTGTGCGGCCGGTACTATTCGACCGGCGGCCGCAAGGAGCTG AAGGGGGTGGCTGGCCCCGAGGCGTGCCAGCAGCTGTGCGCCGCCGACGGCAAATGCCAGGGAGCGAACTGGTGC TTTTCTAAGAAGTATTGCTCGCACCACTATGAGTGGAAGGACCAGCCGAAGGAGGGCAACATAGACTGGGTTACT TTCCGTCCGTCCAAGGAACGCTGA |
Transcript | >Hirsu2|3274 ATGAAGAGCCTCTCGCTGGGCCTCGCAGGTCTTCTCCTGCAGGAGCCACTGTTCGCCCTGGCGGCCAAGGTCCCC GTGCGGGCGATCGGCGAAAACGCGGCCGTCGACGGCAACCGCGTCTCGTGGACCGACAAGGACGGGTGGGAAGAC GGCTTCGGCTGTCCGGCCGCACGCGTGCTCAGCGTCAGCGCGGACAAGAAGTACGGCGCGTGCTGCGAGGAGGGC AACGCGCTGCGCGGCTCGCGCGAGACCGAGTTCCACTGCTGCGCCGACGGGCACGACGTGGCCGGCTCGCTCGAC GTCGGCTTCACCTGCTGTCCGACGGGCCATGCCTACGACGGCACCGTCTGCAAGCAGCAGTGCGTCGACGGCAAG GTCCTGGTCGATGGCAGATGCGGCTGTCCCGACGGCCAGGTCGAGGGCCCCGACGGGACCTGCAAGCCTCACGCT GAGAGCACTTGCTCGTCCGGTCTGGAGACTGGGAAGTGCTACATGTTTAAAGGAGAGACCGGGCGAAGGCTGGCC TTTAAAAACAAACAGTACTCGGAAGCCCAGCCGAACAAGGAGGTGATGCCCGGCAAGTTCCAGCTCTGCCTAGAC GAGAAATGCACGCCGAAGCAGCCGGTGAAGCCGAGCAACGAGGTATACATCAAGGACATACACGGGTCGCCGCCC GAGGCCCTCGACGCCGGCCAGTGGCTCAACAACGCCGCGGGCGGCGCCCACATCGGCAAGACGGCCGACTTCACC AAGGCCGGCAAGTTCTCCTTCACCAAGTGGCCGTGCGGCAAGTACTGCCTCGGCGGCTTCGAAAGGGGCCTGGGG CCGGCGTGCCCGGCCGCGGACCCGTCCATGACCTTCTACACCGCCGCCACCGAGGCCTGCGTCGAGTTCGAGCTC ATCGAGGTGCCGTGCAAGATCCGCGACGACGCCAACAGCTGCCTGTGGAGGAGCGGCCCGGACCCGTGCTGCGGC CGCGTCGACTGCAGCGCCCGCGCCGGGGCGCCGACGCAGGACCCGCCGTTCTGCCCGGCGCAGCACGGCACCACC CGGACCGCCGCCGACGGGGCGGCCTTCGACGTCCTGTGCGGCCGGTACTATTCGACCGGCGGCCGCAAGGAGCTG AAGGGGGTGGCTGGCCCCGAGGCGTGCCAGCAGCTGTGCGCCGCCGACGGCAAATGCCAGGGAGCGAACTGGTGC TTTTCTAAGAAGTATTGCTCGCACCACTATGAGTGGAAGGACCAGCCGAAGGAGGGCAACATAGACTGGGTTACT TTCCGTCCGTCCAAGGAACGCTGA |
Gene | >Hirsu2|3274 ATGAAGAGCCTCTCGCTGGGCCTCGCAGGTCTTCTCCTGCAGGAGCCACTGTTCGCCCTGGCGGCCAAGGTCCCC GTGCGGGCGATCGGCGAAAACGCGGCCGTCGACGGCAACCGCGTCTCGTGGACCGACAAGGACGGGTGGGAAGAC GGCTTCGGCTGTCCGGCCGCACGCGTGCTCAGCGTCAGCGCGGACAAGAAGTACGGCGCGTGCTGCGAGGAGGGC AACGCGCTGCGCGGCTCGCGCGAGACCGAGTTCCACTGCTGCGCCGACGGGCACGACGTGGCCGGCTCGCTCGAC GTCGGCTTCACCTGCTGTCCGACGGGCCATGCCTACGACGGCACCGTCTGCAAGCAGCAGTGCGTCGACGGCAAG GTCCTGGTCGATGGCAGATGCGGCTGTCCCGACGGCCAGGTCGAGGGCCCCGACGGGACCTGCAAGCCTCACGCT GAGAGCACTTGCTCGTCCGGTCTGGAGACTGGTCTGCGTTTCCCTTTCCCCCCTTTGCTGTCACTCGACTTGCGC TTCGTGGCAACGATAGAGACTGTTGTGGCTGACGTGTCCGTTCTTGATAGGGAAGTGCTACATGTTTAAAGGAGA GACCGGGCGAAGGCTGGCCTTTAAAAACAAACAGTACTCGGAAGCCCAGCCGAACAAGGAGGTGATGCCCGGCAA GTTCCAGCTCTGCCTAGACGAGAAATGCACGCCGAAGCAGCCGGTGAAGCCGAGCAACGAGGTATACATCAAGGA CATACACGGGTCGCCGCCCGAGGCCCTCGACGCCGGCCAGTGGCTCAACAACGCCGCGGGCGGCGCCCACATCGG CAAGACGGCCGACTTCACCAAGGCCGGCAAGTTCTCCTTCACCAAGTGGCCGTGCGGCAAGTACTGCCTCGGCGG CTTCGAAAGGGGCCTGGGGCCGGCGTGCCCGGCCGCGGACCCGTCCATGACCTTCTACACCGCCGCCACCGAGGC CTGCGTCGAGTTCGAGCTCATCGAGGTGCCGTGCAAGATCCGCGACGACGCCAACAGCTGCCTGTGGAGGAGCGG CCCGGACCCGTGCTGCGGCCGCGTCGACTGCAGCGCCCGCGCCGGGGCGCCGACGCAGGACCCGCCGTTCTGCCC GGCGCAGCACGGCACCACCCGGACCGCCGCCGACGGGGCGGCCTTCGACGTCCTGTGCGGCCGGTACTATTCGAC CGGCGGCCGCAAGGAGCTGAAGGGGGTGGCTGGCCCCGAGGCGTGCCAGCAGCTGTGCGCCGCCGACGGCAAATG CCAGGGAGCGAACTGGTGCTTTTCTAAGAAGTATTGCTCGCACCACTATGAGTGGAAGGACCAGCCGAAGGAGGG CAACATAGACTGGGTTACTTTCCGTCCGTCCAAGGAACGCTGA |