Protein ID | Hirsu2|3246 |
Gene name | |
Location | Contig_1831:1051..1762 |
Strand | + |
Gene length (bp) | 711 |
Transcript length (bp) | 606 |
Coding sequence length (bp) | 606 |
Protein length (aa) | 202 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Signal peptide | 0.136 | 0.1361 | 0.448 | 0.0793 | 0.207 | 0.0262 | 0.5399 | 0.4175 | 0.3372 | 0.0411 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 18 | 0.99962 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 7 | 29 | 22 |
2 | 131 | 153 | 22 |
Orthofinder run ID | 4 |
Orthogroup | 6092 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3246 MRLLSVLLGAGLAGAGLAAPVAVPYQVITTEDGAPLIRTRVARIDDASPVVPAHLSGRISSYVSAVLEPLRQTEF NMEMIPVFAIDKESVEVMTDSNGDLVALSYTQRLRALVWNPSTRAFYLYPMPGLRGRLPVAILAVSFWVLFTCLY FSGPSQGTQDPALEEQGLIRGPYPREKEESVGETSQPLSSTHSRDEGSHLL* |
Coding | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAGCAAGGTCTCATCCGCGGCCCGTATCCAAGG GAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCGACACATTCAAGAGACGAGGGCTCCCATTTG TTATAG |
Transcript | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAGCAAGGTCTCATCCGCGGCCCGTATCCAAGG GAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCGACACATTCAAGAGACGAGGGCTCCCATTTG TTATAG |
Gene | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGTAAGGGTCCGCCGTCTCGCCGCCGCTTGGCCGCGCCGTCGTTGCTCGCTTCACGTATTCCTAGCCC TTGACTCCGAATGTTGACTGACTCTTGCTCTCCGCCAGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAG CAAGGTCTCATCCGCGGCCCGTATCCAAGGGAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCG ACACATTCAAGAGACGAGGGCTCCCATTTGTTATAG |