© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3246 |
| Gene name | |
| Location | Contig_1831:1051..1762 |
| Strand | + |
| Gene length (bp) | 711 |
| Transcript length (bp) | 606 |
| Coding sequence length (bp) | 606 |
| Protein length (aa) | 202 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Endoplasmic reticulum | Signal peptide | 0.136 | 0.1361 | 0.448 | 0.0793 | 0.207 | 0.0262 | 0.5399 | 0.4175 | 0.3372 | 0.0411 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 18 | 0.99962 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 131 | 153 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 6092 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3246 MRLLSVLLGAGLAGAGLAAPVAVPYQVITTEDGAPLIRTRVARIDDASPVVPAHLSGRISSYVSAVLEPLRQTEF NMEMIPVFAIDKESVEVMTDSNGDLVALSYTQRLRALVWNPSTRAFYLYPMPGLRGRLPVAILAVSFWVLFTCLY FSGPSQGTQDPALEEQGLIRGPYPREKEESVGETSQPLSSTHSRDEGSHLL* |
| Coding | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAGCAAGGTCTCATCCGCGGCCCGTATCCAAGG GAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCGACACATTCAAGAGACGAGGGCTCCCATTTG TTATAG |
| Transcript | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAGCAAGGTCTCATCCGCGGCCCGTATCCAAGG GAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCGACACATTCAAGAGACGAGGGCTCCCATTTG TTATAG |
| Gene | >Hirsu2|3246 ATGAGGCTGCTCTCCGTCCTGCTCGGCGCCGGGCTTGCCGGAGCCGGCCTCGCGGCCCCGGTCGCCGTGCCCTAC CAGGTCATCACGACCGAAGACGGCGCGCCGCTGATCAGAACGCGCGTCGCCCGCATCGACGATGCGTCGCCCGTC GTGCCCGCGCACCTCTCGGGCCGGATATCCAGCTACGTCTCGGCCGTGCTCGAGCCGCTGCGCCAGACCGAGTTC AACATGGAGATGATTCCCGTCTTCGCCATCGACAAGGAGAGCGTCGAGGTCATGACCGACTCCAACGGCGACCTC GTCGCCCTCAGCTACACCCAGCGGCTCCGGGCCCTCGTCTGGAACCCGTCCACCCGGGCCTTCTATCTCTACCCC ATGCCGGGCCTCCGCGGACGCCTGCCCGTCGCCATCCTGGCCGTCTCCTTTTGGGTTCTGTTTACCTGCCTCTAC TTTTCAGGGTAAGGGTCCGCCGTCTCGCCGCCGCTTGGCCGCGCCGTCGTTGCTCGCTTCACGTATTCCTAGCCC TTGACTCCGAATGTTGACTGACTCTTGCTCTCCGCCAGGCCCTCGCAAGGCACCCAGGACCCGGCTCTGGAAGAG CAAGGTCTCATCCGCGGCCCGTATCCAAGGGAGAAGGAGGAGAGCGTGGGCGAAACGTCGCAGCCGCTGTCGTCG ACACATTCAAGAGACGAGGGCTCCCATTTGTTATAG |