© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3239 |
| Gene name | |
| Location | Contig_183:13320..15703 |
| Strand | + |
| Gene length (bp) | 2383 |
| Transcript length (bp) | 2250 |
| Coding sequence length (bp) | 2250 |
| Protein length (aa) | 750 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00022 | Actin | Actin | 6.6E-18 | 103 | 420 |
| PF00022 | Actin | Actin | 1.8E-06 | 655 | 744 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US07|ARP8_SCHPO | Probable actin-related protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.02c PE=1 SV=2 | 22 | 532 | 2.0E-97 |
| sp|Q12386|ARP8_YEAST | Actin-like protein ARP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARP8 PE=1 SV=1 | 33 | 469 | 2.0E-76 |
| sp|Q5RDA1|ARP8_PONAB | Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 | 107 | 749 | 1.0E-65 |
| sp|Q9H981|ARP8_HUMAN | Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 | 107 | 749 | 5.0E-64 |
| sp|D2I1E3|ARP8_AILME | Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 | 107 | 749 | 6.0E-64 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9US07|ARP8_SCHPO | Probable actin-related protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.02c PE=1 SV=2 | 22 | 532 | 2.0E-97 |
| sp|Q12386|ARP8_YEAST | Actin-like protein ARP8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARP8 PE=1 SV=1 | 33 | 469 | 2.0E-76 |
| sp|Q5RDA1|ARP8_PONAB | Actin-related protein 8 OS=Pongo abelii GN=ACTR8 PE=2 SV=1 | 107 | 749 | 1.0E-65 |
| sp|Q9H981|ARP8_HUMAN | Actin-related protein 8 OS=Homo sapiens GN=ACTR8 PE=1 SV=2 | 107 | 749 | 5.0E-64 |
| sp|D2I1E3|ARP8_AILME | Actin-related protein 8 OS=Ailuropoda melanoleuca GN=ACTR8 PE=3 SV=1 | 107 | 749 | 6.0E-64 |
| sp|B5X2S3|ARP8_SALSA | Actin-related protein 8 OS=Salmo salar GN=actr8 PE=2 SV=1 | 107 | 749 | 9.0E-64 |
| sp|P59679|ARP8_DANRE | Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 | 60 | 469 | 8.0E-52 |
| sp|Q1LZF2|ARP8_BOVIN | Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 | 107 | 469 | 8.0E-52 |
| sp|Q8R2S9|ARP8_MOUSE | Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 | 107 | 469 | 2.0E-51 |
| sp|Q29G73|ARP8_DROPS | Actin-related protein 8 OS=Drosophila pseudoobscura pseudoobscura GN=Arp8 PE=3 SV=2 | 102 | 749 | 2.0E-46 |
| sp|Q0IEG8|ARP8_AEDAE | Actin-related protein 8 OS=Aedes aegypti GN=Arp8 PE=3 SV=1 | 107 | 469 | 1.0E-42 |
| sp|Q9VX09|ARP8_DROME | Actin-related protein 8 OS=Drosophila melanogaster GN=Arp8 PE=1 SV=1 | 102 | 482 | 7.0E-33 |
| sp|A2XQX0|ARP9_ORYSI | Actin-related protein 9 OS=Oryza sativa subsp. indica GN=ARP9 PE=3 SV=2 | 105 | 418 | 2.0E-26 |
| sp|Q0JF03|ARP9_ORYSJ | Actin-related protein 9 OS=Oryza sativa subsp. japonica GN=ARP9 PE=2 SV=1 | 105 | 418 | 7.0E-26 |
| sp|Q9LSW2|ARP9_ARATH | Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1 | 105 | 469 | 2.0E-22 |
| sp|Q54JV5|ARP8_DICDI | Actin-related protein 8 OS=Dictyostelium discoideum GN=arpG PE=3 SV=1 | 237 | 387 | 1.0E-21 |
| sp|Q9US07|ARP8_SCHPO | Probable actin-related protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC664.02c PE=1 SV=2 | 636 | 749 | 3.0E-12 |
| sp|Q0IEG8|ARP8_AEDAE | Actin-related protein 8 OS=Aedes aegypti GN=Arp8 PE=3 SV=1 | 614 | 749 | 3.0E-11 |
| sp|Q8R2S9|ARP8_MOUSE | Actin-related protein 8 OS=Mus musculus GN=Actr8 PE=2 SV=1 | 639 | 749 | 6.0E-09 |
| sp|Q1LZF2|ARP8_BOVIN | Actin-related protein 8 OS=Bos taurus GN=ACTR8 PE=2 SV=1 | 639 | 749 | 1.0E-08 |
| sp|Q9VX09|ARP8_DROME | Actin-related protein 8 OS=Drosophila melanogaster GN=Arp8 PE=1 SV=1 | 636 | 749 | 4.0E-07 |
| sp|P59679|ARP8_DANRE | Actin-related protein 8 OS=Danio rerio GN=actr8 PE=2 SV=1 | 639 | 749 | 6.0E-07 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3239 MVGKVSERVLLREGLERTDNGMKLTSWPEVTPINQKNYYTDYMKRDDQVLALRLQSDATRDRLVQTARDRDRLLS KPANGELPLPVPDLAEDDGAVTPSGAVDPSRIIVIHPGSQNLRIGFASDALPKTIPMTIGTRFPKTESDMYEALP RRKFEAKTADQQYGEEWTKKYHRMCGELKTEMRANKRKVLPNSKELVQTYNRRTEPELIEKHNDPLEIEWTDIKT LEDPDSPTSCFIGNDALRVPDDSDPKFKLWWPIRYGWWNEDDYSSQEHLYDDFESLLDRALRQELGLRTNSEWQQ YNCVFVIPDLYDKRYVEQILRSCMTWFEFSRVCFVQESMAATFGAGYTQACVVDVGAQKTSVTCVEDGLCIEDSR VNLKYGGYDITETFVKMMLYDNFPYQEINLRRRYDFLLAEELKMKHCTMSQADISVQLYQFHVRAPSQPTRKYSF KTYDEVILAAMGVFEPSIFDNSVKLRGRRKLVERSYNAYDVDFPDDPSSAAQLAILALVKPSLTSSSNGPPQQSQ PEVSTPSKERTQPFNFLGRGEAGTNGTPAVSHAGSPAPEGSSTPIPPPYVFGSGKDGANCDSPAPSGTRAAGTPV PGQASQASQPPPGIFVDGPERSATSVAAERDGVLPVAPLDIAILTSIQNAAKGDEKKLRDLLGSIMVIGGGSKIA QFTVVLEEKLKTRRPDLTDRILVSRSARDMDEQVVAWKGASVFSKLPTNDSWITPFEFERLGSRTLHHKVLWAW* |
| Coding | >Hirsu2|3239 ATGGTCGGCAAGGTCTCCGAGAGGGTCCTTCTCCGGGAGGGGCTGGAGAGGACCGACAATGGCATGAAGCTGACG AGCTGGCCCGAGGTCACGCCCATCAACCAAAAAAACTATTACACCGATTACATGAAGCGCGACGACCAGGTTCTC GCCCTCCGACTCCAGAGTGATGCGACGCGCGATCGTCTCGTCCAAACCGCCCGCGACCGCGACCGACTCCTCTCC AAGCCAGCAAATGGCGAGCTGCCCCTCCCGGTCCCCGATCTCGCGGAGGATGACGGTGCCGTCACGCCCTCGGGC GCAGTGGACCCCTCGAGGATAATCGTCATTCATCCTGGCAGCCAGAACTTGCGCATTGGCTTCGCCAGCGACGCT CTGCCCAAGACCATACCCATGACGATCGGGACAAGGTTTCCCAAGACGGAATCTGACATGTACGAGGCGCTCCCT CGGCGGAAGTTCGAGGCCAAGACAGCCGACCAACAATACGGGGAGGAGTGGACCAAGAAATATCATCGAATGTGC GGCGAGCTCAAGACCGAGATGCGTGCCAACAAGCGCAAGGTGCTGCCCAACTCCAAGGAACTCGTCCAGACGTAC AATCGGCGAACGGAGCCTGAATTGATCGAGAAGCACAACGACCCTCTGGAGATCGAGTGGACCGACATCAAGACG CTCGAGGACCCGGACTCTCCTACGTCTTGCTTCATCGGCAACGACGCCTTGCGCGTGCCCGACGACTCGGATCCA AAGTTCAAGCTTTGGTGGCCGATCCGGTACGGGTGGTGGAACGAAGACGACTACTCGAGCCAAGAGCACCTCTAC GACGACTTTGAGAGTCTCTTGGACAGGGCGCTGCGGCAGGAGCTTGGCCTCAGGACGAACAGCGAGTGGCAGCAG TACAACTGCGTCTTCGTCATCCCGGACCTGTACGACAAGCGTTACGTCGAACAGATTCTGCGCTCCTGCATGACG TGGTTCGAATTCAGCAGGGTATGCTTCGTGCAGGAGAGCATGGCTGCCACCTTCGGCGCCGGATACACGCAAGCC TGCGTCGTCGACGTGGGGGCCCAGAAGACGTCGGTGACGTGCGTGGAAGATGGCCTCTGCATCGAGGATTCGAGG GTGAACCTCAAGTACGGCGGCTACGACATCACGGAGACGTTCGTCAAGATGATGCTGTACGACAACTTTCCATAT CAGGAGATCAATCTGCGGAGGCGTTATGACTTTCTGCTGGCCGAGGAGCTCAAGATGAAGCACTGCACCATGTCC CAGGCCGACATTTCGGTGCAGCTATATCAGTTTCACGTCCGCGCGCCCAGTCAGCCCACGAGGAAGTACAGCTTC AAGACGTATGACGAGGTCATCCTGGCCGCCATGGGCGTTTTCGAGCCGTCCATCTTCGACAACAGCGTCAAGCTG CGGGGTCGGCGCAAGCTGGTCGAGCGGTCGTACAATGCCTACGACGTCGACTTTCCCGACGACCCGTCCTCGGCG GCGCAGCTGGCGATACTGGCGCTGGTGAAGCCGTCGCTCACGTCGAGCAGCAACGGACCTCCGCAGCAGTCACAG CCAGAAGTGTCGACGCCCAGCAAGGAGAGGACGCAGCCGTTCAACTTCCTCGGAAGGGGCGAGGCCGGCACGAAC GGTACGCCCGCAGTCTCGCACGCCGGCTCGCCGGCGCCGGAGGGAAGCAGCACGCCCATCCCCCCGCCGTACGTC TTTGGATCCGGCAAGGACGGTGCCAACTGCGACAGCCCGGCGCCGAGCGGGACCCGAGCCGCCGGCACTCCGGTC CCTGGGCAAGCGTCGCAGGCGTCGCAGCCGCCGCCGGGAATATTTGTCGACGGCCCGGAGCGGAGTGCGACGTCG GTAGCGGCGGAGAGGGACGGCGTGCTCCCGGTGGCGCCGCTGGACATTGCCATCCTCACGAGCATCCAGAACGCC GCTAAGGGCGACGAGAAGAAGCTGCGTGACCTCTTGGGGAGCATCATGGTCATAGGAGGGGGCTCCAAGATTGCC CAGTTCACGGTCGTGTTGGAGGAGAAGCTGAAGACGCGGCGGCCCGACCTGACGGATAGGATCTTGGTGAGCAGG AGCGCCAGGGACATGGACGAACAGGTGGTGGCGTGGAAGGGGGCCAGCGTCTTCTCCAAACTGCCGACGAACGAC TCGTGGATCACGCCCTTCGAGTTCGAACGGCTGGGCTCGAGGACTCTTCACCACAAGGTGCTGTGGGCCTGGTGA |
| Transcript | >Hirsu2|3239 ATGGTCGGCAAGGTCTCCGAGAGGGTCCTTCTCCGGGAGGGGCTGGAGAGGACCGACAATGGCATGAAGCTGACG AGCTGGCCCGAGGTCACGCCCATCAACCAAAAAAACTATTACACCGATTACATGAAGCGCGACGACCAGGTTCTC GCCCTCCGACTCCAGAGTGATGCGACGCGCGATCGTCTCGTCCAAACCGCCCGCGACCGCGACCGACTCCTCTCC AAGCCAGCAAATGGCGAGCTGCCCCTCCCGGTCCCCGATCTCGCGGAGGATGACGGTGCCGTCACGCCCTCGGGC GCAGTGGACCCCTCGAGGATAATCGTCATTCATCCTGGCAGCCAGAACTTGCGCATTGGCTTCGCCAGCGACGCT CTGCCCAAGACCATACCCATGACGATCGGGACAAGGTTTCCCAAGACGGAATCTGACATGTACGAGGCGCTCCCT CGGCGGAAGTTCGAGGCCAAGACAGCCGACCAACAATACGGGGAGGAGTGGACCAAGAAATATCATCGAATGTGC GGCGAGCTCAAGACCGAGATGCGTGCCAACAAGCGCAAGGTGCTGCCCAACTCCAAGGAACTCGTCCAGACGTAC AATCGGCGAACGGAGCCTGAATTGATCGAGAAGCACAACGACCCTCTGGAGATCGAGTGGACCGACATCAAGACG CTCGAGGACCCGGACTCTCCTACGTCTTGCTTCATCGGCAACGACGCCTTGCGCGTGCCCGACGACTCGGATCCA AAGTTCAAGCTTTGGTGGCCGATCCGGTACGGGTGGTGGAACGAAGACGACTACTCGAGCCAAGAGCACCTCTAC GACGACTTTGAGAGTCTCTTGGACAGGGCGCTGCGGCAGGAGCTTGGCCTCAGGACGAACAGCGAGTGGCAGCAG TACAACTGCGTCTTCGTCATCCCGGACCTGTACGACAAGCGTTACGTCGAACAGATTCTGCGCTCCTGCATGACG TGGTTCGAATTCAGCAGGGTATGCTTCGTGCAGGAGAGCATGGCTGCCACCTTCGGCGCCGGATACACGCAAGCC TGCGTCGTCGACGTGGGGGCCCAGAAGACGTCGGTGACGTGCGTGGAAGATGGCCTCTGCATCGAGGATTCGAGG GTGAACCTCAAGTACGGCGGCTACGACATCACGGAGACGTTCGTCAAGATGATGCTGTACGACAACTTTCCATAT CAGGAGATCAATCTGCGGAGGCGTTATGACTTTCTGCTGGCCGAGGAGCTCAAGATGAAGCACTGCACCATGTCC CAGGCCGACATTTCGGTGCAGCTATATCAGTTTCACGTCCGCGCGCCCAGTCAGCCCACGAGGAAGTACAGCTTC AAGACGTATGACGAGGTCATCCTGGCCGCCATGGGCGTTTTCGAGCCGTCCATCTTCGACAACAGCGTCAAGCTG CGGGGTCGGCGCAAGCTGGTCGAGCGGTCGTACAATGCCTACGACGTCGACTTTCCCGACGACCCGTCCTCGGCG GCGCAGCTGGCGATACTGGCGCTGGTGAAGCCGTCGCTCACGTCGAGCAGCAACGGACCTCCGCAGCAGTCACAG CCAGAAGTGTCGACGCCCAGCAAGGAGAGGACGCAGCCGTTCAACTTCCTCGGAAGGGGCGAGGCCGGCACGAAC GGTACGCCCGCAGTCTCGCACGCCGGCTCGCCGGCGCCGGAGGGAAGCAGCACGCCCATCCCCCCGCCGTACGTC TTTGGATCCGGCAAGGACGGTGCCAACTGCGACAGCCCGGCGCCGAGCGGGACCCGAGCCGCCGGCACTCCGGTC CCTGGGCAAGCGTCGCAGGCGTCGCAGCCGCCGCCGGGAATATTTGTCGACGGCCCGGAGCGGAGTGCGACGTCG GTAGCGGCGGAGAGGGACGGCGTGCTCCCGGTGGCGCCGCTGGACATTGCCATCCTCACGAGCATCCAGAACGCC GCTAAGGGCGACGAGAAGAAGCTGCGTGACCTCTTGGGGAGCATCATGGTCATAGGAGGGGGCTCCAAGATTGCC CAGTTCACGGTCGTGTTGGAGGAGAAGCTGAAGACGCGGCGGCCCGACCTGACGGATAGGATCTTGGTGAGCAGG AGCGCCAGGGACATGGACGAACAGGTGGTGGCGTGGAAGGGGGCCAGCGTCTTCTCCAAACTGCCGACGAACGAC TCGTGGATCACGCCCTTCGAGTTCGAACGGCTGGGCTCGAGGACTCTTCACCACAAGGTGCTGTGGGCCTGGTGA |
| Gene | >Hirsu2|3239 ATGGTCGGCAAGGTCTCCGAGAGGGTCCTTCTCCGGGAGGGCAAGCCGATCCCCTCCCCGTGTGCGCTCCAGGCG ACTTTGCGCTGACTTTGACATCCGGGCAGGGCTGGAGAGGACCGACAATGGCATGAAGCTGACGAGCTGGCCCGA GGTCACGCCCATCAACCAAAAAAACTATTACACGTGAGTCTCGGCCGTGGCACGGCGTCTGCGAGTGCGAGAGCG ATGGAGACTGACACGGGCCTTCGTTAGCGATTACATGAAGCGCGACGACCAGGTTCTCGCCCTCCGACTCCAGAG TGATGCGACGCGCGATCGTCTCGTCCAAACCGCCCGCGACCGCGACCGACTCCTCTCCAAGCCAGCAAATGGCGA GCTGCCCCTCCCGGTCCCCGATCTCGCGGAGGATGACGGTGCCGTCACGCCCTCGGGCGCAGTGGACCCCTCGAG GATAATCGTCATTCATCCTGGCAGCCAGAACTTGCGCATTGGCTTCGCCAGCGACGCTCTGCCCAAGACCATACC CATGACGATCGGGACAAGGTTTCCCAAGACGGAATCTGACATGTACGAGGCGCTCCCTCGGCGGAAGTTCGAGGC CAAGACAGCCGACCAACAATACGGGGAGGAGTGGACCAAGAAATATCATCGAATGTGCGGCGAGCTCAAGACCGA GATGCGTGCCAACAAGCGCAAGGTGCTGCCCAACTCCAAGGAACTCGTCCAGACGTACAATCGGCGAACGGAGCC TGAATTGATCGAGAAGCACAACGACCCTCTGGAGATCGAGTGGACCGACATCAAGACGCTCGAGGACCCGGACTC TCCTACGTCTTGCTTCATCGGCAACGACGCCTTGCGCGTGCCCGACGACTCGGATCCAAAGTTCAAGCTTTGGTG GCCGATCCGGTACGGGTGGTGGAACGAAGACGACTACTCGAGCCAAGAGCACCTCTACGACGACTTTGAGAGTCT CTTGGACAGGGCGCTGCGGCAGGAGCTTGGCCTCAGGACGAACAGCGAGTGGCAGCAGTACAACTGCGTCTTCGT CATCCCGGACCTGTACGACAAGCGTTACGTCGAACAGATTCTGCGCTCCTGCATGACGTGGTTCGAATTCAGCAG GGTATGCTTCGTGCAGGAGAGCATGGCTGCCACCTTCGGCGCCGGATACACGCAAGCCTGCGTCGTCGACGTGGG GGCCCAGAAGACGTCGGTGACGTGCGTGGAAGATGGCCTCTGCATCGAGGATTCGAGGGTGAACCTCAAGTACGG CGGCTACGACATCACGGAGACGTTCGTCAAGATGATGCTGTACGACAACTTTCCATATCAGGAGATCAATCTGCG GAGGCGTTATGACTTTCTGCTGGCCGAGGAGCTCAAGATGAAGCACTGCACCATGTCCCAGGCCGACATTTCGGT GCAGCTATATCAGTTTCACGTCCGCGCGCCCAGTCAGCCCACGAGGAAGTACAGCTTCAAGACGTATGACGAGGT CATCCTGGCCGCCATGGGCGTTTTCGAGCCGTCCATCTTCGACAACAGCGTCAAGCTGCGGGGTCGGCGCAAGCT GGTCGAGCGGTCGTACAATGCCTACGACGTCGACTTTCCCGACGACCCGTCCTCGGCGGCGCAGCTGGCGATACT GGCGCTGGTGAAGCCGTCGCTCACGTCGAGCAGCAACGGACCTCCGCAGCAGTCACAGCCAGAAGTGTCGACGCC CAGCAAGGAGAGGACGCAGCCGTTCAACTTCCTCGGAAGGGGCGAGGCCGGCACGAACGGTACGCCCGCAGTCTC GCACGCCGGCTCGCCGGCGCCGGAGGGAAGCAGCACGCCCATCCCCCCGCCGTACGTCTTTGGATCCGGCAAGGA CGGTGCCAACTGCGACAGCCCGGCGCCGAGCGGGACCCGAGCCGCCGGCACTCCGGTCCCTGGGCAAGCGTCGCA GGCGTCGCAGCCGCCGCCGGGAATATTTGTCGACGGCCCGGAGCGGAGTGCGACGTCGGTAGCGGCGGAGAGGGA CGGCGTGCTCCCGGTGGCGCCGCTGGACATTGCCATCCTCACGAGCATCCAGAACGCCGCTAAGGGCGACGAGAA GAAGCTGCGTGACCTCTTGGGGAGCATCATGGTCATAGGAGGGGGCTCCAAGATTGCCCAGTTCACGGTCGTGTT GGAGGAGAAGCTGAAGACGCGGCGGCCCGACCTGACGGATAGGATCTTGGTGAGCAGGAGCGCCAGGGACATGGA CGAACAGGTGGTGGCGTGGAAGGGGGCCAGCGTCTTCTCCAAACTGCCGACGAACGACTCGTGGATCACGCCCTT CGAGTTCGAACGGCTGGGCTCGAGGACTCTTCACCACAAGGTGCTGTGGGCCTGGTGA |