© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3188 |
| Gene name | |
| Location | Contig_1812:3897..4680 |
| Strand | + |
| Gene length (bp) | 783 |
| Transcript length (bp) | 720 |
| Coding sequence length (bp) | 720 |
| Protein length (aa) | 240 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1381 | 0.1079 | 0.9561 | 0.1009 | 0.0764 | 0.0335 | 0.1152 | 0.0689 | 0.1412 | 0.0013 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999097 |
| Orthofinder run ID | 4 |
| Orthogroup | 62 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3188 MMHWSLVFLGSAMLTRPAAAANVPYYDGLTRGQGYNTLLGKGLKHGSVSFRRKKAKREEPEPEPEPEESLDDTAD TAEEDERMTFEFTAPKPDFSGLDKWSYFVPLDTAAIAQAVSRLGLERVAAGQNTTDLADSRDAVGAEQNTTGLVP YRGGAGTGPKTAVLLPYRHGAGAGWNSTTGLAAGRRNSTTGLLAGGRNATRLLAGGRSEPRAGRTSRAADRPRCD GAFKAEWSYAEDYA* |
| Coding | >Hirsu2|3188 ATGATGCACTGGTCCCTCGTCTTCTTGGGCTCGGCCATGCTCACGCGGCCGGCCGCCGCCGCCAATGTGCCGTAC TACGACGGTCTGACCAGAGGACAGGGCTACAACACGCTCCTCGGCAAGGGACTCAAGCATGGCTCCGTATCCTTT CGACGCAAGAAGGCGAAGAGGGAGGAGCCCGAGCCCGAGCCCGAGCCCGAGGAGTCGTTGGACGATACGGCAGAC ACGGCCGAGGAAGATGAGAGAATGACGTTCGAGTTCACGGCGCCCAAGCCCGACTTTTCCGGCCTGGACAAGTGG TCCTACTTCGTCCCCCTCGACACGGCCGCCATTGCGCAGGCCGTTTCTCGCCTGGGCCTCGAAAGGGTCGCCGCC GGGCAGAACACGACCGATCTGGCAGACTCTCGCGACGCTGTCGGAGCCGAGCAAAACACGACCGGTCTGGTGCCC TATCGTGGCGGGGCCGGGACCGGGCCAAAGACGGCCGTTCTGCTACCCTATCGTCACGGAGCAGGAGCCGGATGG AACTCGACGACCGGTCTGGCAGCCGGCAGACGGAACTCGACGACCGGCCTGCTCGCCGGCGGACGGAACGCGACC CGTCTCCTGGCCGGCGGCCGTAGCGAACCCCGCGCCGGCCGGACATCCCGGGCGGCCGACCGCCCCCGTTGCGAC GGCGCCTTCAAGGCCGAATGGAGCTATGCGGAGGACTACGCGTAA |
| Transcript | >Hirsu2|3188 ATGATGCACTGGTCCCTCGTCTTCTTGGGCTCGGCCATGCTCACGCGGCCGGCCGCCGCCGCCAATGTGCCGTAC TACGACGGTCTGACCAGAGGACAGGGCTACAACACGCTCCTCGGCAAGGGACTCAAGCATGGCTCCGTATCCTTT CGACGCAAGAAGGCGAAGAGGGAGGAGCCCGAGCCCGAGCCCGAGCCCGAGGAGTCGTTGGACGATACGGCAGAC ACGGCCGAGGAAGATGAGAGAATGACGTTCGAGTTCACGGCGCCCAAGCCCGACTTTTCCGGCCTGGACAAGTGG TCCTACTTCGTCCCCCTCGACACGGCCGCCATTGCGCAGGCCGTTTCTCGCCTGGGCCTCGAAAGGGTCGCCGCC GGGCAGAACACGACCGATCTGGCAGACTCTCGCGACGCTGTCGGAGCCGAGCAAAACACGACCGGTCTGGTGCCC TATCGTGGCGGGGCCGGGACCGGGCCAAAGACGGCCGTTCTGCTACCCTATCGTCACGGAGCAGGAGCCGGATGG AACTCGACGACCGGTCTGGCAGCCGGCAGACGGAACTCGACGACCGGCCTGCTCGCCGGCGGACGGAACGCGACC CGTCTCCTGGCCGGCGGCCGTAGCGAACCCCGCGCCGGCCGGACATCCCGGGCGGCCGACCGCCCCCGTTGCGAC GGCGCCTTCAAGGCCGAATGGAGCTATGCGGAGGACTACGCGTAA |
| Gene | >Hirsu2|3188 ATGATGCACTGGTCCCTCGTCTTCTTGGGCTCGGCCATGCTCACGCGGCCGGCCGCCGCCGCCAATGTGCCGTAC TACGACGGTCTGACCAGAGGACAGGGGTTAGTCGAGGCCTCGTCGCGGTTTGTCCGTCCAGATCGTCCTGACCTC GACCCGCGTTGCAGCTACAACACGCTCCTCGGCAAGGGACTCAAGCATGGCTCCGTATCCTTTCGACGCAAGAAG GCGAAGAGGGAGGAGCCCGAGCCCGAGCCCGAGCCCGAGGAGTCGTTGGACGATACGGCAGACACGGCCGAGGAA GATGAGAGAATGACGTTCGAGTTCACGGCGCCCAAGCCCGACTTTTCCGGCCTGGACAAGTGGTCCTACTTCGTC CCCCTCGACACGGCCGCCATTGCGCAGGCCGTTTCTCGCCTGGGCCTCGAAAGGGTCGCCGCCGGGCAGAACACG ACCGATCTGGCAGACTCTCGCGACGCTGTCGGAGCCGAGCAAAACACGACCGGTCTGGTGCCCTATCGTGGCGGG GCCGGGACCGGGCCAAAGACGGCCGTTCTGCTACCCTATCGTCACGGAGCAGGAGCCGGATGGAACTCGACGACC GGTCTGGCAGCCGGCAGACGGAACTCGACGACCGGCCTGCTCGCCGGCGGACGGAACGCGACCCGTCTCCTGGCC GGCGGCCGTAGCGAACCCCGCGCCGGCCGGACATCCCGGGCGGCCGACCGCCCCCGTTGCGACGGCGCCTTCAAG GCCGAATGGAGCTATGCGGAGGACTACGCGTAA |