Protein ID | Hirsu2|3172 |
Gene name | |
Location | Contig_181:905..1912 |
Strand | - |
Gene length (bp) | 1007 |
Transcript length (bp) | 930 |
Coding sequence length (bp) | 930 |
Protein length (aa) | 310 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF02544 | Steroid_dh | 3-oxo-5-alpha-steroid 4-dehydrogenase | 1.5E-26 | 159 | 308 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94511|YN67_SCHPO | Putative enoyl reductase C646.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC646.07c PE=3 SV=1 | 7 | 309 | 9.0E-60 |
sp|Q55C17|TECR_DICDI | Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 | 33 | 309 | 2.0E-56 |
sp|Q9N5Y2|TECR_CAEEL | Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1 | 37 | 309 | 2.0E-48 |
sp|Q9NZ01|TECR_HUMAN | Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1 | 29 | 309 | 6.0E-45 |
sp|Q3ZCD7|TECR_BOVIN | Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1 | 29 | 309 | 7.0E-45 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|O94511|YN67_SCHPO | Putative enoyl reductase C646.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC646.07c PE=3 SV=1 | 7 | 309 | 9.0E-60 |
sp|Q55C17|TECR_DICDI | Very-long-chain enoyl-CoA reductase OS=Dictyostelium discoideum GN=gpsn2 PE=3 SV=1 | 33 | 309 | 2.0E-56 |
sp|Q9N5Y2|TECR_CAEEL | Probable very-long-chain enoyl-CoA reductase art-1 OS=Caenorhabditis elegans GN=art-1 PE=3 SV=1 | 37 | 309 | 2.0E-48 |
sp|Q9NZ01|TECR_HUMAN | Very-long-chain enoyl-CoA reductase OS=Homo sapiens GN=TECR PE=1 SV=1 | 29 | 309 | 6.0E-45 |
sp|Q3ZCD7|TECR_BOVIN | Very-long-chain enoyl-CoA reductase OS=Bos taurus GN=TECR PE=2 SV=1 | 29 | 309 | 7.0E-45 |
sp|Q64232|TECR_RAT | Very-long-chain enoyl-CoA reductase OS=Rattus norvegicus GN=Tecr PE=1 SV=1 | 29 | 309 | 5.0E-44 |
sp|Q9CY27|TECR_MOUSE | Very-long-chain enoyl-CoA reductase OS=Mus musculus GN=Tecr PE=1 SV=1 | 29 | 309 | 1.0E-43 |
sp|Q99190|TECR_YEAST | Very-long-chain enoyl-CoA reductase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSC13 PE=1 SV=1 | 24 | 290 | 2.0E-39 |
sp|Q9M2U2|TECR_ARATH | Very-long-chain enoyl-CoA reductase OS=Arabidopsis thaliana GN=ECR PE=1 SV=1 | 25 | 309 | 2.0E-36 |
sp|Q8BFZ1|TECRL_MOUSE | Trans-2,3-enoyl-CoA reductase-like OS=Mus musculus GN=Tecrl PE=1 SV=1 | 31 | 309 | 1.0E-31 |
sp|Q5HYJ1|TECRL_HUMAN | Trans-2,3-enoyl-CoA reductase-like OS=Homo sapiens GN=TECRL PE=2 SV=1 | 30 | 309 | 4.0E-29 |
sp|Q3SZ89|TECRL_BOVIN | Trans-2,3-enoyl-CoA reductase-like OS=Bos taurus GN=TECRL PE=2 SV=1 | 30 | 309 | 3.0E-26 |
sp|Q5K2N1|DET2_SOLLC | Steroid 5-alpha-reductase DET2 OS=Solanum lycopersicum GN=DET2 PE=1 SV=1 | 202 | 308 | 8.0E-09 |
sp|Q2QDF6|DET2_GOSHI | Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum GN=DET2 PE=1 SV=1 | 128 | 306 | 6.0E-06 |
sp|Q9CAH5|POED1_ARATH | Polyprenol reductase 1 OS=Arabidopsis thaliana GN=At1g72590 PE=3 SV=1 | 141 | 306 | 9.0E-06 |
sp|Q9SI62|POED2_ARATH | Polyprenol reductase 2 OS=Arabidopsis thaliana GN=At2g16530 PE=1 SV=2 | 195 | 306 | 1.0E-05 |
GO Term | Description | Terminal node |
---|---|---|
GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
GO:0006629 | lipid metabolic process | Yes |
GO:0016491 | oxidoreductase activity | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0003824 | catalytic activity | No |
GO:0044238 | primary metabolic process | No |
GO:0008150 | biological_process | No |
GO:0003674 | molecular_function | No |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Endoplasmic reticulum | Transmembrane domain | 0.1243 | 0.0957 | 0.0246 | 0.1597 | 0.2251 | 0.0088 | 0.8152 | 0.1604 | 0.2994 | 0.0009 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 170 | 187 | 17 |
2 | 202 | 224 | 22 |
3 | 237 | 259 | 22 |
4 | 264 | 283 | 19 |
Orthofinder run ID | 4 |
Orthogroup | 5099 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3172 MALKTTLKLTNRSPKQPVKRLPPSIDLPPEATVEEAKRVVARAAGIADHNRVGLFDPATKKTLKDRRARLADEAG VASAGEVLVKDLGPQVAWRTVFVVEYLGPILIHAGAVAARPWLFAGAADAPMSPTQWLSFAMIVGHFVKRELETL FVHRFSASTMPAFNLVKNSAFYWALSGLLCACSIYGPRSRAAAARLPALDALGAALFLFGEAGNALVHLYLASLR SAGGTERRIPAGYGFSLVTSPNYMYEILSWLGVILVSRDWAVALFIAIGAAQMYVWACGKERAYRKEFGDKYKKK RYVILPGLL* |
Coding | >Hirsu2|3172 ATGGCCCTCAAGACGACCCTCAAGCTGACGAACCGCTCCCCCAAGCAGCCCGTCAAGCGGCTGCCGCCCAGCATC GACCTGCCGCCCGAGGCGACGGTCGAGGAGGCCAAGCGGGTGGTGGCGCGGGCGGCCGGCATCGCCGACCACAAC CGCGTCGGCCTCTTCGACCCGGCGACGAAGAAGACGCTCAAGGATCGGCGGGCGCGGCTGGCGGACGAGGCGGGC GTGGCGTCGGCGGGCGAGGTGCTGGTCAAGGACCTGGGCCCGCAGGTGGCCTGGCGCACCGTCTTCGTCGTCGAG TACCTGGGCCCGATCCTGATCCACGCGGGCGCGGTGGCGGCGCGGCCGTGGCTGTTCGCGGGCGCGGCCGACGCG CCCATGTCGCCGACGCAGTGGCTCAGCTTCGCCATGATCGTCGGCCACTTCGTCAAGCGCGAGCTCGAGACGCTC TTCGTCCACCGCTTCTCCGCCAGCACCATGCCGGCCTTCAACCTCGTCAAGAACAGCGCCTTCTACTGGGCCCTG TCCGGCCTGCTGTGCGCCTGCTCCATCTACGGCCCGCGCTCGCGCGCCGCCGCCGCCCGCCTGCCCGCCCTCGAC GCCCTCGGCGCCGCCCTCTTCCTCTTCGGCGAGGCCGGCAACGCCCTCGTCCACCTGTACCTGGCCTCGCTGCGC TCCGCCGGCGGCACCGAGCGCCGCATCCCGGCCGGCTACGGCTTCTCCCTCGTCACCAGCCCCAACTACATGTAC GAGATCCTGTCCTGGCTCGGCGTCATCCTCGTCAGCCGCGACTGGGCCGTCGCCCTCTTCATCGCCATCGGCGCC GCCCAGATGTACGTCTGGGCCTGCGGCAAGGAGCGCGCCTATCGCAAGGAGTTTGGCGACAAGTACAAGAAGAAG CGCTATGTCATCCTGCCGGGCCTCCTGTGA |
Transcript | >Hirsu2|3172 ATGGCCCTCAAGACGACCCTCAAGCTGACGAACCGCTCCCCCAAGCAGCCCGTCAAGCGGCTGCCGCCCAGCATC GACCTGCCGCCCGAGGCGACGGTCGAGGAGGCCAAGCGGGTGGTGGCGCGGGCGGCCGGCATCGCCGACCACAAC CGCGTCGGCCTCTTCGACCCGGCGACGAAGAAGACGCTCAAGGATCGGCGGGCGCGGCTGGCGGACGAGGCGGGC GTGGCGTCGGCGGGCGAGGTGCTGGTCAAGGACCTGGGCCCGCAGGTGGCCTGGCGCACCGTCTTCGTCGTCGAG TACCTGGGCCCGATCCTGATCCACGCGGGCGCGGTGGCGGCGCGGCCGTGGCTGTTCGCGGGCGCGGCCGACGCG CCCATGTCGCCGACGCAGTGGCTCAGCTTCGCCATGATCGTCGGCCACTTCGTCAAGCGCGAGCTCGAGACGCTC TTCGTCCACCGCTTCTCCGCCAGCACCATGCCGGCCTTCAACCTCGTCAAGAACAGCGCCTTCTACTGGGCCCTG TCCGGCCTGCTGTGCGCCTGCTCCATCTACGGCCCGCGCTCGCGCGCCGCCGCCGCCCGCCTGCCCGCCCTCGAC GCCCTCGGCGCCGCCCTCTTCCTCTTCGGCGAGGCCGGCAACGCCCTCGTCCACCTGTACCTGGCCTCGCTGCGC TCCGCCGGCGGCACCGAGCGCCGCATCCCGGCCGGCTACGGCTTCTCCCTCGTCACCAGCCCCAACTACATGTAC GAGATCCTGTCCTGGCTCGGCGTCATCCTCGTCAGCCGCGACTGGGCCGTCGCCCTCTTCATCGCCATCGGCGCC GCCCAGATGTACGTCTGGGCCTGCGGCAAGGAGCGCGCCTATCGCAAGGAGTTTGGCGACAAGTACAAGAAGAAG CGCTATGTCATCCTGCCGGGCCTCCTGTGA |
Gene | >Hirsu2|3172 ATGGCCCTCAAGACGACCCTCAAGCTGACGAACCGCTGTTCGTGACACTCCCCCCCCCTTCCCTTCTCGATGGCG CAGGAACATGTACTGACGAGGCACAACTCCGGGCTGCAGCCCCCAAGCAGCCCGTCAAGCGGCTGCCGCCCAGCA TCGACCTGCCGCCCGAGGCGACGGTCGAGGAGGCCAAGCGGGTGGTGGCGCGGGCGGCCGGCATCGCCGACCACA ACCGCGTCGGCCTCTTCGACCCGGCGACGAAGAAGACGCTCAAGGATCGGCGGGCGCGGCTGGCGGACGAGGCGG GCGTGGCGTCGGCGGGCGAGGTGCTGGTCAAGGACCTGGGCCCGCAGGTGGCCTGGCGCACCGTCTTCGTCGTCG AGTACCTGGGCCCGATCCTGATCCACGCGGGCGCGGTGGCGGCGCGGCCGTGGCTGTTCGCGGGCGCGGCCGACG CGCCCATGTCGCCGACGCAGTGGCTCAGCTTCGCCATGATCGTCGGCCACTTCGTCAAGCGCGAGCTCGAGACGC TCTTCGTCCACCGCTTCTCCGCCAGCACCATGCCGGCCTTCAACCTCGTCAAGAACAGCGCCTTCTACTGGGCCC TGTCCGGCCTGCTGTGCGCCTGCTCCATCTACGGCCCGCGCTCGCGCGCCGCCGCCGCCCGCCTGCCCGCCCTCG ACGCCCTCGGCGCCGCCCTCTTCCTCTTCGGCGAGGCCGGCAACGCCCTCGTCCACCTGTACCTGGCCTCGCTGC GCTCCGCCGGCGGCACCGAGCGCCGCATCCCGGCCGGCTACGGCTTCTCCCTCGTCACCAGCCCCAACTACATGT ACGAGATCCTGTCCTGGCTCGGCGTCATCCTCGTCAGCCGCGACTGGGCCGTCGCCCTCTTCATCGCCATCGGCG CCGCCCAGATGTACGTCTGGGCCTGCGGCAAGGAGCGCGCCTATCGCAAGGAGTTTGGCGACAAGTACAAGAAGA AGCGCTATGTCATCCTGCCGGGCCTCCTGTGA |