© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3145 |
| Gene name | |
| Location | Contig_180:11961..12207 |
| Strand | - |
| Gene length (bp) | 246 |
| Transcript length (bp) | 246 |
| Coding sequence length (bp) | 246 |
| Protein length (aa) | 82 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0696 | 0.0417 | 0.9796 | 0.0469 | 0.0462 | 0.0068 | 0.0971 | 0.0825 | 0.0736 | 0.0046 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 28 | 0.999632 |
| Orthofinder run ID | 4 |
| Orthogroup | 6589 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps camponoti-floridani | Ophcf2|03732 |
| Ophiocordyceps camponoti-rufipedis | Ophun1|4710 |
| Ophiocordyceps subramaniannii | Hirsu2|3145 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3145 MVRAVFALLSLPVLALCGSLIPTGLEARDADGSVLDRRGANECRSYQDCPICGFYERCCLRAGGSSGFCTCGTSG RESQCL* |
| Coding | >Hirsu2|3145 ATGGTCCGCGCCGTCTTCGCCCTCCTCAGCCTGCCCGTGCTCGCCCTCTGCGGCAGCCTGATCCCGACGGGGCTC GAGGCCCGCGACGCCGACGGGTCGGTCCTCGACCGCCGCGGCGCCAACGAGTGCCGCAGCTACCAGGACTGCCCC ATCTGCGGCTTCTACGAGCGCTGCTGCCTCCGCGCCGGCGGCTCGTCCGGCTTCTGCACCTGCGGCACCTCGGGC CGCGAGAGCCAGTGCCTGTAG |
| Transcript | >Hirsu2|3145 ATGGTCCGCGCCGTCTTCGCCCTCCTCAGCCTGCCCGTGCTCGCCCTCTGCGGCAGCCTGATCCCGACGGGGCTC GAGGCCCGCGACGCCGACGGGTCGGTCCTCGACCGCCGCGGCGCCAACGAGTGCCGCAGCTACCAGGACTGCCCC ATCTGCGGCTTCTACGAGCGCTGCTGCCTCCGCGCCGGCGGCTCGTCCGGCTTCTGCACCTGCGGCACCTCGGGC CGCGAGAGCCAGTGCCTGTAG |
| Gene | >Hirsu2|3145 ATGGTCCGCGCCGTCTTCGCCCTCCTCAGCCTGCCCGTGCTCGCCCTCTGCGGCAGCCTGATCCCGACGGGGCTC GAGGCCCGCGACGCCGACGGGTCGGTCCTCGACCGCCGCGGCGCCAACGAGTGCCGCAGCTACCAGGACTGCCCC ATCTGCGGCTTCTACGAGCGCTGCTGCCTCCGCGCCGGCGGCTCGTCCGGCTTCTGCACCTGCGGCACCTCGGGC CGCGAGAGCCAGTGCCTGTAG |