© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3129 |
| Gene name | |
| Location | Contig_18:34203..35559 |
| Strand | + |
| Gene length (bp) | 1356 |
| Transcript length (bp) | 1176 |
| Coding sequence length (bp) | 1176 |
| Protein length (aa) | 392 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Golgi apparatus | Signal peptide|Transmembrane domain | 0.1298 | 0.1737 | 0.3353 | 0.1467 | 0.076 | 0.0134 | 0.4798 | 0.1522 | 0.8991 | 0.0144 |
| Orthofinder run ID | 4 |
| Orthogroup | 7558 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3129 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3129 MISGSVVRLLILCGAILFTVHLCLRQINIHATSVLDSLPSKHGRFRANVDSCRSGSFSGRITGNRCHDSLQGVSG WERPADVKKVMGLIFYGRRQTVAILDCYLKRTKDADDLALLDKILASESAYTKWSVDLEKGGYASSYDGIQDGVM YVKMDDDVVFVEDTAIKSIVEMKAAHPEYYAVSANVVNQVSSEVGFGWLHRNMGAVKPYLPDSERPPISRVDDWR PSNLPSWDGPSDFSYKSWTPLNGQKHRWLPIRGRTERILDDTPISEAPPDGEYAWKSWQAAAQMHYSLLENIENG ELWRYRFPMWDYQRKRMGIQFVAMMGDDINLAKPIGQDDELHFSVEMTTRLGRSKQSSFRHAIPRNSVYRLLRLP SLYWDASPCYQRGLTY* |
| Coding | >Hirsu2|3129 ATGATCTCTGGCTCCGTCGTCCGGCTTCTGATTCTTTGCGGGGCGATTCTATTCACGGTGCACCTCTGTCTTCGA CAAATCAATATCCACGCCACCTCGGTCCTCGATAGCCTACCGTCCAAGCACGGCCGATTTAGAGCCAACGTCGAT TCGTGTCGTAGCGGCTCGTTTTCGGGAAGGATCACAGGCAACAGATGCCATGATTCCCTCCAGGGTGTATCCGGG TGGGAGCGTCCGGCCGATGTTAAGAAGGTCATGGGTTTAATTTTCTATGGACGGCGACAGACCGTGGCAATTCTC GATTGTTATCTCAAGCGTACGAAAGACGCCGACGATCTTGCTTTACTCGACAAAATACTTGCCAGCGAATCAGCT TATACGAAATGGTCAGTAGACCTCGAGAAAGGGGGCTATGCTAGCTCGTACGACGGAATCCAGGACGGGGTTATG TATGTCAAAATGGACGACGATGTCGTATTTGTCGAGGATACTGCTATCAAGTCTATCGTCGAAATGAAAGCCGCG CACCCCGAGTACTACGCCGTGTCGGCCAATGTCGTCAATCAAGTTTCCAGCGAGGTCGGCTTCGGCTGGCTTCAT CGAAATATGGGCGCTGTTAAGCCATATCTTCCCGATTCCGAGCGGCCGCCGATATCTAGGGTTGATGATTGGAGA CCATCCAATTTGCCATCTTGGGACGGGCCATCTGACTTCTCGTACAAGAGCTGGACGCCACTCAATGGCCAGAAA CATCGATGGCTACCGATAAGGGGCAGGACGGAAAGAATCCTCGACGACACGCCGATATCCGAGGCCCCGCCGGAT GGCGAATACGCTTGGAAGAGCTGGCAGGCAGCGGCACAGATGCACTACAGCCTGTTGGAGAATATCGAGAATGGC GAGCTCTGGCGGTACAGGTTCCCTATGTGGGATTACCAGCGCAAGCGAATGGGAATTCAGTTTGTAGCGATGATG GGCGATGACATCAATCTCGCCAAGCCCATTGGCCAGGATGACGAACTTCACTTCTCCGTGGAAATGACGACGAGA CTTGGACGAAGTAAGCAATCCTCCTTTCGTCATGCCATTCCCCGCAACTCAGTGTACCGACTCCTACGTCTGCCA AGCCTCTACTGGGACGCATCACCTTGTTATCAGCGAGGGCTCACTTACTGA |
| Transcript | >Hirsu2|3129 ATGATCTCTGGCTCCGTCGTCCGGCTTCTGATTCTTTGCGGGGCGATTCTATTCACGGTGCACCTCTGTCTTCGA CAAATCAATATCCACGCCACCTCGGTCCTCGATAGCCTACCGTCCAAGCACGGCCGATTTAGAGCCAACGTCGAT TCGTGTCGTAGCGGCTCGTTTTCGGGAAGGATCACAGGCAACAGATGCCATGATTCCCTCCAGGGTGTATCCGGG TGGGAGCGTCCGGCCGATGTTAAGAAGGTCATGGGTTTAATTTTCTATGGACGGCGACAGACCGTGGCAATTCTC GATTGTTATCTCAAGCGTACGAAAGACGCCGACGATCTTGCTTTACTCGACAAAATACTTGCCAGCGAATCAGCT TATACGAAATGGTCAGTAGACCTCGAGAAAGGGGGCTATGCTAGCTCGTACGACGGAATCCAGGACGGGGTTATG TATGTCAAAATGGACGACGATGTCGTATTTGTCGAGGATACTGCTATCAAGTCTATCGTCGAAATGAAAGCCGCG CACCCCGAGTACTACGCCGTGTCGGCCAATGTCGTCAATCAAGTTTCCAGCGAGGTCGGCTTCGGCTGGCTTCAT CGAAATATGGGCGCTGTTAAGCCATATCTTCCCGATTCCGAGCGGCCGCCGATATCTAGGGTTGATGATTGGAGA CCATCCAATTTGCCATCTTGGGACGGGCCATCTGACTTCTCGTACAAGAGCTGGACGCCACTCAATGGCCAGAAA CATCGATGGCTACCGATAAGGGGCAGGACGGAAAGAATCCTCGACGACACGCCGATATCCGAGGCCCCGCCGGAT GGCGAATACGCTTGGAAGAGCTGGCAGGCAGCGGCACAGATGCACTACAGCCTGTTGGAGAATATCGAGAATGGC GAGCTCTGGCGGTACAGGTTCCCTATGTGGGATTACCAGCGCAAGCGAATGGGAATTCAGTTTGTAGCGATGATG GGCGATGACATCAATCTCGCCAAGCCCATTGGCCAGGATGACGAACTTCACTTCTCCGTGGAAATGACGACGAGA CTTGGACGAAGTAAGCAATCCTCCTTTCGTCATGCCATTCCCCGCAACTCAGTGTACCGACTCCTACGTCTGCCA AGCCTCTACTGGGACGCATCACCTTGTTATCAGCGAGGGCTCACTTACTGA |
| Gene | >Hirsu2|3129 ATGATCTCTGGCTCCGTCGTCCGGCTTCTGATTCTTTGCGGGGCGATTCTATTCACGGTGCACCTCTGTCTTCGA CAAATCAATATCCACGCCACCTCGGTCCTCGATAGCCTACCGTCCAAGCACGGCCGATTTAGAGCCAACGTCGAT TCGTGTCGTAGCGGCTCGTTTTCGGGAAGGATCACAGGCAACAGATGCCATGATTCCCTCCAGGGTGTATCCGGG TGGGAGCGTCCGGCCGATGTTAAGAAGGTCATGGGTTTAATTTTCTATGGACGGCGACAGACCGTGGCAATTCTC GATTGTTATCTCAAGGTTTGTCCATTCGCACATCGCGATTCCAAGTCCCCGAATGCGAATATTGCTGACGCCATC GTCTTTGACCTTGGTAGCGCAACCTTGTTAAGAACGGAGGCATACTAGATGGTGTGATATTCCTACAGCGTACGA AAGACGCCGACGATCTTGCTTTACTCGACAAAATACTTGCCAGCGAATCAGCTTATACGAAATGGTCAGTAGACC TCGAGAAAGGGGGCTATGCTAGCTCGTACGACGGAATCCAGGACGGGGTTATGTATGTCAAAATGGACGACGATG TCGTGAGTGGTGTCTGAATCGAGGTGCTTGCTTGGCCACTAACATGTTCTTCAGGTATTTGTCGAGGATACTGCT ATCAAGTCTATCGTCGAAATGAAAGCCGCGCACCCCGAGTACTACGCCGTGTCGGCCAATGTCGTCAATCAAGTT TCCAGCGAGGTCGGCTTCGGCTGGCTTCATCGAAATATGGGCGCTGTTAAGCCATATCTTCCCGATTCCGAGCGG CCGCCGATATCTAGGGTTGATGATTGGAGACCATCCAATTTGCCATCTTGGGACGGGCCATCTGACTTCTCGTAC AAGAGCTGGACGCCACTCAATGGCCAGAAACATCGATGGCTACCGATAAGGGGCAGGACGGAAAGAATCCTCGAC GACACGCCGATATCCGAGGCCCCGCCGGATGGCGAATACGCTTGGAAGAGCTGGCAGGCAGCGGCACAGATGCAC TACAGCCTGTTGGAGAATATCGAGAATGGCGAGCTCTGGCGGTACAGGTTCCCTATGTGGGATTACCAGCGCAAG CGAATGGGAATTCAGTTTGTAGCGATGATGGGCGATGACATCAATCTCGCCAAGCCCATTGGCCAGGATGACGAA CTTCACTTCTCCGTGGAAATGACGACGAGACTTGGACGAAGTAAGCAATCCTCCTTTCGTCATGCCATTCCCCGC AACTCAGTGTACCGACTCCTACGTCTGCCAAGCCTCTACTGGGACGCATCACCTTGTTATCAGCGAGGGCTCACT TACTGA |