Protein ID | Hirsu2|3102 |
Gene name | |
Location | Contig_1794:93..1404 |
Strand | + |
Gene length (bp) | 1311 |
Transcript length (bp) | 1311 |
Coding sequence length (bp) | 1311 |
Protein length (aa) | 437 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14388 | DUF4419 | Domain of unknown function (DUF4419) | 8.6E-49 | 107 | 399 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.0938 | 0.04 | 0.9168 | 0.0733 | 0.1024 | 0.0271 | 0.3332 | 0.2632 | 0.1898 | 0.0037 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 21 | 0.999761 |
Orthofinder run ID | 4 |
Orthogroup | 87 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|3102 MLLSTVPKLLGLAALAGFAQAQDPKGPDHVWLELQKKTHLIPGPPADPNYKDKSATSSTGVFRNSTFQWYPLDKS AVAASSWAAVWGSNQEGLFREQSVFPSPSLGHALMESWARHEDIIISPDTVWREILAQLSLYIYQEPGWIYKFIR PLTTDVIAVPDSWLGDFAGKMTAHLAESRYLNAQVADWVKPGFSTSTADDELTAAAVLLGRPQSLRMRTNHWTCL GEPLLRGTVESPSCGSPSISLLGTRADWVKLAEKVEKLTTWGWGWQAVEYADGLRPVLERMVDTFDQPAPEELQD FWTQMIVRKRPDCYGGADAIAGWINAFYYWGPSGRIGNMNADGGVTVGGNKYSPRSIYDIPVSYSAMDLKLIDKE EDEREWNLVAGNIGMRRDQTENKYVGAEQLGGWFVYGPRNGIDNPDHEGHVKRISNYLGSC* |
Coding | >Hirsu2|3102 ATGCTGCTCTCAACAGTCCCCAAGCTGCTCGGGCTGGCGGCCCTGGCCGGCTTCGCGCAGGCGCAAGATCCCAAG GGCCCTGATCACGTCTGGCTTGAGCTCCAGAAGAAGACGCATCTCATTCCGGGGCCCCCGGCTGACCCGAACTAC AAAGACAAGTCGGCGACATCGAGCACTGGGGTGTTCCGAAACAGCACCTTTCAGTGGTATCCCCTGGACAAGTCT GCCGTCGCTGCATCGTCTTGGGCGGCGGTCTGGGGCAGCAATCAAGAGGGCTTGTTCCGGGAGCAATCTGTGTTC CCGTCGCCCAGCCTGGGCCACGCCCTGATGGAGTCCTGGGCGAGGCACGAAGACATCATCATCAGCCCGGACACA GTCTGGCGCGAGATCCTGGCCCAGCTCTCCCTCTACATCTATCAAGAGCCGGGCTGGATCTATAAGTTTATCAGG CCACTGACGACGGATGTCATTGCAGTTCCCGACTCCTGGCTTGGCGACTTCGCGGGCAAGATGACGGCACACCTG GCAGAGTCCCGGTACCTAAACGCACAAGTCGCGGACTGGGTCAAGCCCGGGTTCAGCACCAGCACAGCGGATGAC GAGCTGACAGCCGCGGCGGTGCTCTTGGGCCGGCCGCAAAGTCTACGCATGAGGACGAACCACTGGACGTGCTTG GGCGAACCGCTGTTGAGGGGAACGGTCGAGAGCCCCAGCTGCGGCTCTCCCTCGATCTCGCTTCTTGGTACCCGG GCGGACTGGGTAAAGCTGGCGGAGAAGGTGGAGAAGTTGACGACATGGGGTTGGGGGTGGCAGGCGGTCGAGTAT GCCGACGGCCTGCGGCCTGTCCTGGAACGCATGGTCGATACGTTCGACCAGCCGGCGCCCGAGGAGCTCCAGGAC TTCTGGACGCAGATGATTGTCCGCAAGCGCCCGGACTGCTACGGGGGCGCCGACGCCATTGCCGGCTGGATCAAC GCCTTCTACTACTGGGGCCCGAGCGGCCGCATCGGCAACATGAACGCCGACGGCGGCGTGACCGTGGGCGGCAAC AAGTACTCCCCCCGCAGCATATACGACATCCCCGTTAGCTACTCGGCAATGGATCTCAAGTTGATCGACAAGGAA GAGGATGAGCGGGAGTGGAACCTCGTGGCCGGAAACATCGGGATGCGACGGGACCAGACCGAAAACAAGTACGTC GGCGCGGAGCAGCTGGGCGGCTGGTTCGTGTACGGCCCTCGGAATGGCATCGATAACCCTGACCACGAGGGACAC GTAAAGCGCATCAGCAACTATCTTGGCAGCTGCTAG |
Transcript | >Hirsu2|3102 ATGCTGCTCTCAACAGTCCCCAAGCTGCTCGGGCTGGCGGCCCTGGCCGGCTTCGCGCAGGCGCAAGATCCCAAG GGCCCTGATCACGTCTGGCTTGAGCTCCAGAAGAAGACGCATCTCATTCCGGGGCCCCCGGCTGACCCGAACTAC AAAGACAAGTCGGCGACATCGAGCACTGGGGTGTTCCGAAACAGCACCTTTCAGTGGTATCCCCTGGACAAGTCT GCCGTCGCTGCATCGTCTTGGGCGGCGGTCTGGGGCAGCAATCAAGAGGGCTTGTTCCGGGAGCAATCTGTGTTC CCGTCGCCCAGCCTGGGCCACGCCCTGATGGAGTCCTGGGCGAGGCACGAAGACATCATCATCAGCCCGGACACA GTCTGGCGCGAGATCCTGGCCCAGCTCTCCCTCTACATCTATCAAGAGCCGGGCTGGATCTATAAGTTTATCAGG CCACTGACGACGGATGTCATTGCAGTTCCCGACTCCTGGCTTGGCGACTTCGCGGGCAAGATGACGGCACACCTG GCAGAGTCCCGGTACCTAAACGCACAAGTCGCGGACTGGGTCAAGCCCGGGTTCAGCACCAGCACAGCGGATGAC GAGCTGACAGCCGCGGCGGTGCTCTTGGGCCGGCCGCAAAGTCTACGCATGAGGACGAACCACTGGACGTGCTTG GGCGAACCGCTGTTGAGGGGAACGGTCGAGAGCCCCAGCTGCGGCTCTCCCTCGATCTCGCTTCTTGGTACCCGG GCGGACTGGGTAAAGCTGGCGGAGAAGGTGGAGAAGTTGACGACATGGGGTTGGGGGTGGCAGGCGGTCGAGTAT GCCGACGGCCTGCGGCCTGTCCTGGAACGCATGGTCGATACGTTCGACCAGCCGGCGCCCGAGGAGCTCCAGGAC TTCTGGACGCAGATGATTGTCCGCAAGCGCCCGGACTGCTACGGGGGCGCCGACGCCATTGCCGGCTGGATCAAC GCCTTCTACTACTGGGGCCCGAGCGGCCGCATCGGCAACATGAACGCCGACGGCGGCGTGACCGTGGGCGGCAAC AAGTACTCCCCCCGCAGCATATACGACATCCCCGTTAGCTACTCGGCAATGGATCTCAAGTTGATCGACAAGGAA GAGGATGAGCGGGAGTGGAACCTCGTGGCCGGAAACATCGGGATGCGACGGGACCAGACCGAAAACAAGTACGTC GGCGCGGAGCAGCTGGGCGGCTGGTTCGTGTACGGCCCTCGGAATGGCATCGATAACCCTGACCACGAGGGACAC GTAAAGCGCATCAGCAACTATCTTGGCAGCTGCTAG |
Gene | >Hirsu2|3102 ATGCTGCTCTCAACAGTCCCCAAGCTGCTCGGGCTGGCGGCCCTGGCCGGCTTCGCGCAGGCGCAAGATCCCAAG GGCCCTGATCACGTCTGGCTTGAGCTCCAGAAGAAGACGCATCTCATTCCGGGGCCCCCGGCTGACCCGAACTAC AAAGACAAGTCGGCGACATCGAGCACTGGGGTGTTCCGAAACAGCACCTTTCAGTGGTATCCCCTGGACAAGTCT GCCGTCGCTGCATCGTCTTGGGCGGCGGTCTGGGGCAGCAATCAAGAGGGCTTGTTCCGGGAGCAATCTGTGTTC CCGTCGCCCAGCCTGGGCCACGCCCTGATGGAGTCCTGGGCGAGGCACGAAGACATCATCATCAGCCCGGACACA GTCTGGCGCGAGATCCTGGCCCAGCTCTCCCTCTACATCTATCAAGAGCCGGGCTGGATCTATAAGTTTATCAGG CCACTGACGACGGATGTCATTGCAGTTCCCGACTCCTGGCTTGGCGACTTCGCGGGCAAGATGACGGCACACCTG GCAGAGTCCCGGTACCTAAACGCACAAGTCGCGGACTGGGTCAAGCCCGGGTTCAGCACCAGCACAGCGGATGAC GAGCTGACAGCCGCGGCGGTGCTCTTGGGCCGGCCGCAAAGTCTACGCATGAGGACGAACCACTGGACGTGCTTG GGCGAACCGCTGTTGAGGGGAACGGTCGAGAGCCCCAGCTGCGGCTCTCCCTCGATCTCGCTTCTTGGTACCCGG GCGGACTGGGTAAAGCTGGCGGAGAAGGTGGAGAAGTTGACGACATGGGGTTGGGGGTGGCAGGCGGTCGAGTAT GCCGACGGCCTGCGGCCTGTCCTGGAACGCATGGTCGATACGTTCGACCAGCCGGCGCCCGAGGAGCTCCAGGAC TTCTGGACGCAGATGATTGTCCGCAAGCGCCCGGACTGCTACGGGGGCGCCGACGCCATTGCCGGCTGGATCAAC GCCTTCTACTACTGGGGCCCGAGCGGCCGCATCGGCAACATGAACGCCGACGGCGGCGTGACCGTGGGCGGCAAC AAGTACTCCCCCCGCAGCATATACGACATCCCCGTTAGCTACTCGGCAATGGATCTCAAGTTGATCGACAAGGAA GAGGATGAGCGGGAGTGGAACCTCGTGGCCGGAAACATCGGGATGCGACGGGACCAGACCGAAAACAAGTACGTC GGCGCGGAGCAGCTGGGCGGCTGGTTCGTGTACGGCCCTCGGAATGGCATCGATAACCCTGACCACGAGGGACAC GTAAAGCGCATCAGCAACTATCTTGGCAGCTGCTAG |