Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3079
Gene name
LocationContig_1787:30..333
Strand-
Gene length (bp)303
Transcript length (bp)303
Coding sequence length (bp)303
Protein length (aa) 101

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Extracellular|Endoplasmic reticulum Signal peptide 0.1288 0.1259 0.6919 0.1105 0.0908 0.0498 0.7751 0.4886 0.4389 0.0089

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 7 26 19

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup9247
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|3079 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3079
MARRQHLALTLLLTLVLFFSISYIYSSPDSASAREAARLLDKVRPRPQPAPAGADADHEPDAHDHSGSGFGFGLG
NLGGLTDGLLGGESIAPKLENATLK*
Coding >Hirsu2|3079
ATGGCACGCCGCCAGCATCTCGCCCTGACGCTGCTCCTCACCCTCGTCCTCTTCTTCAGCATCTCCTACATCTAC
TCGAGCCCCGACTCGGCGTCGGCGCGCGAGGCCGCCCGCCTGCTGGACAAGGTCCGGCCGAGGCCGCAGCCGGCG
CCGGCCGGCGCCGACGCGGACCATGAGCCGGATGCCCACGACCACTCCGGCTCGGGCTTCGGCTTCGGCCTCGGC
AACCTGGGCGGCCTCACCGACGGGCTGCTGGGAGGAGAGTCGATCGCGCCGAAGCTGGAGAACGCGACGCTGAAG
TGA
Transcript >Hirsu2|3079
ATGGCACGCCGCCAGCATCTCGCCCTGACGCTGCTCCTCACCCTCGTCCTCTTCTTCAGCATCTCCTACATCTAC
TCGAGCCCCGACTCGGCGTCGGCGCGCGAGGCCGCCCGCCTGCTGGACAAGGTCCGGCCGAGGCCGCAGCCGGCG
CCGGCCGGCGCCGACGCGGACCATGAGCCGGATGCCCACGACCACTCCGGCTCGGGCTTCGGCTTCGGCCTCGGC
AACCTGGGCGGCCTCACCGACGGGCTGCTGGGAGGAGAGTCGATCGCGCCGAAGCTGGAGAACGCGACGCTGAAG
TGA
Gene >Hirsu2|3079
ATGGCACGCCGCCAGCATCTCGCCCTGACGCTGCTCCTCACCCTCGTCCTCTTCTTCAGCATCTCCTACATCTAC
TCGAGCCCCGACTCGGCGTCGGCGCGCGAGGCCGCCCGCCTGCTGGACAAGGTCCGGCCGAGGCCGCAGCCGGCG
CCGGCCGGCGCCGACGCGGACCATGAGCCGGATGCCCACGACCACTCCGGCTCGGGCTTCGGCTTCGGCCTCGGC
AACCTGGGCGGCCTCACCGACGGGCTGCTGGGAGGAGAGTCGATCGCGCCGAAGCTGGAGAACGCGACGCTGAAG
TGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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