© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3071 |
| Gene name | |
| Location | Contig_1783:1602..3367 |
| Strand | - |
| Gene length (bp) | 1765 |
| Transcript length (bp) | 1644 |
| Coding sequence length (bp) | 1644 |
| Protein length (aa) | 548 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1206 | 0.0726 | 0.9812 | 0.1284 | 0.041 | 0.0075 | 0.0518 | 0.0527 | 0.1432 | 0.0017 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 19 | 0.999526 |
| Orthofinder run ID | 4 |
| Orthogroup | 5091 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3071 MHVGSMLVALLGASAIAEAAQLTHHSPYAGILTRRQAGGRGGRQRQQQQQQQQQQQQQQQKQQQQNNNNGGGNGG GNGNKNNNGNNNGNNNNNKNNNNNNNNNNNNNNDLQLDPRVISVGSKSDGQVDLKGQPAKGVKAGQAKSATSDNN FINFCLNAKQGKGGKPTITNGLQNKDGSCNPIPMGNIPAVNRMVSTTFTFPQACQNLPPNQNIVLKALVANMNLG AFTNPDVTYYSGPQDLDPQNGRIIGHTHLTVQDMGNNFAAQQPLDAQEFAFFKGIDDAGQQVGNGVTQVQATIAG GLPPGCYRVCSLTGASNHQCVNMPVAQRGASDDCQKFSVGQANCGCAQNNGNNNGNNGNNNNNNNNNNNNNGNNG KNGNNNGNNGKNGQNGNGQGGRGQQNGNGQQNGQQNAQQQQQQQQQQQQAQQQKQKEEQQKQIEQAQQQQQQQQQ NAAQKGQGQGRGGQGQGGQGQGQGRGAQAQAAAKQAQAQGGKGGGGQGQGQGQGQGGRGGQGGGDAVAAAKQKQA QAQAQAQGQGGGGGRGGGRARL* |
| Coding | >Hirsu2|3071 ATGCACGTCGGCTCTATGCTGGTAGCCCTCCTGGGCGCTTCTGCCATCGCTGAGGCCGCCCAACTTACACACCAC TCCCCGTACGCCGGTATCTTGACCCGACGGCAAGCCGGTGGCCGCGGAGGGCGGCAAAGGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAACAGCAGAATAATAATAATGGAGGCGGCAATGGTGGC GGCAATGGGAACAAAAACAATAACGGCAACAACAACGGCAACAACAACAACAACAAGAACAACAACAATAACAAC AACAACAACAACAACAACAACAACGACCTGCAGCTGGATCCGAGGGTCATCAGCGTGGGCTCCAAGTCAGATGGC CAGGTCGACCTCAAAGGCCAGCCGGCCAAGGGTGTCAAGGCCGGACAAGCTAAATCGGCAACGAGCGACAACAAC TTCATTAATTTCTGTTTGAACGCGAAGCAGGGCAAGGGAGGCAAACCGACCATTACCAATGGTCTGCAGAACAAG GACGGTTCCTGCAACCCCATCCCTATGGGCAACATCCCTGCCGTCAACCGCATGGTTTCCACGACCTTCACCTTC CCTCAGGCCTGCCAAAACCTGCCGCCTAACCAGAACATCGTGTTGAAGGCTCTGGTGGCCAACATGAACCTCGGT GCCTTCACCAACCCCGACGTCACCTACTACTCTGGGCCTCAGGACCTGGACCCGCAGAATGGCAGGATCATCGGG CACACCCACTTGACCGTCCAGGACATGGGAAACAACTTCGCCGCCCAGCAGCCGCTGGACGCCCAGGAGTTCGCC TTCTTCAAGGGCATCGACGACGCCGGCCAGCAGGTGGGCAACGGCGTCACCCAGGTGCAGGCTACCATCGCCGGA GGTCTCCCGCCGGGCTGCTACCGCGTCTGCTCGCTCACCGGTGCCTCCAACCACCAGTGTGTCAACATGCCGGTT GCCCAGCGAGGCGCCTCAGACGATTGCCAGAAGTTCAGCGTCGGCCAGGCCAACTGTGGTTGCGCTCAGAACAAC GGCAACAACAACGGCAACAACGGCAACAACAACAACAACAACAACAACAACAACAACAACAATGGCAACAACGGG AAGAACGGCAACAACAACGGCAACAACGGGAAGAATGGTCAGAACGGTAACGGTCAGGGTGGCCGTGGTCAACAG AATGGGAATGGTCAGCAGAATGGTCAGCAGAATGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCA CAGCAACAGAAGCAGAAGGAGGAGCAGCAGAAGCAGATTGAGCAGGCACAGCAGCAGCAGCAGCAGCAGCAGCAG AATGCCGCCCAAAAGGGTCAGGGTCAGGGCCGTGGAGGTCAGGGCCAGGGCGGCCAAGGTCAGGGTCAGGGCCGC GGAGCTCAGGCCCAGGCCGCCGCGAAGCAGGCTCAGGCCCAGGGCGGCAAGGGAGGCGGAGGCCAAGGTCAGGGC CAGGGCCAGGGCCAGGGCGGTCGAGGTGGCCAAGGTGGTGGCGACGCCGTCGCTGCCGCGAAGCAGAAGCAGGCC CAGGCTCAGGCCCAGGCTCAGGGGCAGGGCGGAGGCGGAGGCCGCGGCGGGGGACGGGCTCGGCTCTAA |
| Transcript | >Hirsu2|3071 ATGCACGTCGGCTCTATGCTGGTAGCCCTCCTGGGCGCTTCTGCCATCGCTGAGGCCGCCCAACTTACACACCAC TCCCCGTACGCCGGTATCTTGACCCGACGGCAAGCCGGTGGCCGCGGAGGGCGGCAAAGGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAACAGCAGAATAATAATAATGGAGGCGGCAATGGTGGC GGCAATGGGAACAAAAACAATAACGGCAACAACAACGGCAACAACAACAACAACAAGAACAACAACAATAACAAC AACAACAACAACAACAACAACAACGACCTGCAGCTGGATCCGAGGGTCATCAGCGTGGGCTCCAAGTCAGATGGC CAGGTCGACCTCAAAGGCCAGCCGGCCAAGGGTGTCAAGGCCGGACAAGCTAAATCGGCAACGAGCGACAACAAC TTCATTAATTTCTGTTTGAACGCGAAGCAGGGCAAGGGAGGCAAACCGACCATTACCAATGGTCTGCAGAACAAG GACGGTTCCTGCAACCCCATCCCTATGGGCAACATCCCTGCCGTCAACCGCATGGTTTCCACGACCTTCACCTTC CCTCAGGCCTGCCAAAACCTGCCGCCTAACCAGAACATCGTGTTGAAGGCTCTGGTGGCCAACATGAACCTCGGT GCCTTCACCAACCCCGACGTCACCTACTACTCTGGGCCTCAGGACCTGGACCCGCAGAATGGCAGGATCATCGGG CACACCCACTTGACCGTCCAGGACATGGGAAACAACTTCGCCGCCCAGCAGCCGCTGGACGCCCAGGAGTTCGCC TTCTTCAAGGGCATCGACGACGCCGGCCAGCAGGTGGGCAACGGCGTCACCCAGGTGCAGGCTACCATCGCCGGA GGTCTCCCGCCGGGCTGCTACCGCGTCTGCTCGCTCACCGGTGCCTCCAACCACCAGTGTGTCAACATGCCGGTT GCCCAGCGAGGCGCCTCAGACGATTGCCAGAAGTTCAGCGTCGGCCAGGCCAACTGTGGTTGCGCTCAGAACAAC GGCAACAACAACGGCAACAACGGCAACAACAACAACAACAACAACAACAACAACAACAACAATGGCAACAACGGG AAGAACGGCAACAACAACGGCAACAACGGGAAGAATGGTCAGAACGGTAACGGTCAGGGTGGCCGTGGTCAACAG AATGGGAATGGTCAGCAGAATGGTCAGCAGAATGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCA CAGCAACAGAAGCAGAAGGAGGAGCAGCAGAAGCAGATTGAGCAGGCACAGCAGCAGCAGCAGCAGCAGCAGCAG AATGCCGCCCAAAAGGGTCAGGGTCAGGGCCGTGGAGGTCAGGGCCAGGGCGGCCAAGGTCAGGGTCAGGGCCGC GGAGCTCAGGCCCAGGCCGCCGCGAAGCAGGCTCAGGCCCAGGGCGGCAAGGGAGGCGGAGGCCAAGGTCAGGGC CAGGGCCAGGGCCAGGGCGGTCGAGGTGGCCAAGGTGGTGGCGACGCCGTCGCTGCCGCGAAGCAGAAGCAGGCC CAGGCTCAGGCCCAGGCTCAGGGGCAGGGCGGAGGCGGAGGCCGCGGCGGGGGACGGGCTCGGCTCTAA |
| Gene | >Hirsu2|3071 ATGCACGTCGGCTCTATGCTGGTAGCCCTCCTGGGCGCTTCTGCCATCGCTGAGGCCGCCCAACTTACACACCAC TCCCCGTACGCCGGTATCTTGACCCGACGGCAAGCCGGTGGCCGCGGAGGGCGGCAAAGGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAGCAGCAACAGCAGAATAATAATAATGGAGGCGGCAATGGTGGC GGCAATGGGAACAAAAACAATAACGGCAACAACAACGGCAACAACAACAACAACAAGAACAACAACAATAACAAC AACAACAACAACAACAACAACAACGACCTGCAGCTGGATCCGAGGGTCATCAGCGTGGGCTCCAAGTCAGATGGC CAGGTCGACCTCAAAGGCCAGCCGGCCAAGGGTGTCAAGGCCGGACAAGCTAAATCGGCAACGTTAGACCCCCCC CCAACACCCTACCCTGTTGAATAACGAAGCTGACAACCGGCTTGCAGGAGCGACAACAACTTCATTAATTTCTGT TTGAACGCGAAGCAGGGCAAGGGAGGCAAACCGACCATTACCAATGGTCTGCAGAACAAGGACGGTTCCTGCAAC CCCATCCGTGAGTCCGACCTGCTCATGACCTAACCCTTTCACACGTGGGCTGACCGGACCCGCCGCAGCTATGGG CAACATCCCTGCCGTCAACCGCATGGTTTCCACGACCTTCACCTTCCCTCAGGCCTGCCAAAACCTGCCGCCTAA CCAGAACATCGTGTTGAAGGCTCTGGTGGCCAACATGAACCTCGGTGCCTTCACCAACCCCGACGTCACCTACTA CTCTGGGCCTCAGGACCTGGACCCGCAGAATGGCAGGATCATCGGGCACACCCACTTGACCGTCCAGGACATGGG AAACAACTTCGCCGCCCAGCAGCCGCTGGACGCCCAGGAGTTCGCCTTCTTCAAGGGCATCGACGACGCCGGCCA GCAGGTGGGCAACGGCGTCACCCAGGTGCAGGCTACCATCGCCGGAGGTCTCCCGCCGGGCTGCTACCGCGTCTG CTCGCTCACCGGTGCCTCCAACCACCAGTGTGTCAACATGCCGGTTGCCCAGCGAGGCGCCTCAGACGATTGCCA GAAGTTCAGCGTCGGCCAGGCCAACTGTGGTTGCGCTCAGAACAACGGCAACAACAACGGCAACAACGGCAACAA CAACAACAACAACAACAACAACAACAACAACAATGGCAACAACGGGAAGAACGGCAACAACAACGGCAACAACGG GAAGAATGGTCAGAACGGTAACGGTCAGGGTGGCCGTGGTCAACAGAATGGGAATGGTCAGCAGAATGGTCAGCA GAATGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGCACAGCAACAGAAGCAGAAGGAGGAGCAGCA GAAGCAGATTGAGCAGGCACAGCAGCAGCAGCAGCAGCAGCAGCAGAATGCCGCCCAAAAGGGTCAGGGTCAGGG CCGTGGAGGTCAGGGCCAGGGCGGCCAAGGTCAGGGTCAGGGCCGCGGAGCTCAGGCCCAGGCCGCCGCGAAGCA GGCTCAGGCCCAGGGCGGCAAGGGAGGCGGAGGCCAAGGTCAGGGCCAGGGCCAGGGCCAGGGCGGTCGAGGTGG CCAAGGTGGTGGCGACGCCGTCGCTGCCGCGAAGCAGAAGCAGGCCCAGGCTCAGGCCCAGGCTCAGGGGCAGGG CGGAGGCGGAGGCCGCGGCGGGGGACGGGCTCGGCTCTAA |