© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3065 |
| Gene name | |
| Location | Contig_1781:25..1465 |
| Strand | - |
| Gene length (bp) | 1440 |
| Transcript length (bp) | 1296 |
| Coding sequence length (bp) | 1296 |
| Protein length (aa) | 432 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02776 | TPP_enzyme_N | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 8.4E-40 | 3 | 185 |
| PF00205 | TPP_enzyme_M | Thiamine pyrophosphate enzyme, central domain | 3.0E-09 | 209 | 312 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O06335|ILVB2_MYCTU | Putative acetolactate synthase large subunit IlvB2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ilvB2 PE=2 SV=1 | 48 | 312 | 9.0E-12 |
| sp|Q8BU33|ILVBL_MOUSE | Acetolactate synthase-like protein OS=Mus musculus GN=Ilvbl PE=1 SV=1 | 48 | 384 | 6.0E-08 |
| sp|P20906|MDLC_PSEPU | Benzoylformate decarboxylase OS=Pseudomonas putida GN=mdlC PE=1 SV=2 | 9 | 225 | 2.0E-07 |
| sp|B4S4J4|MEND_PROA2 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=menD PE=3 SV=1 | 5 | 271 | 2.0E-07 |
| sp|Q6NV04|ILVBL_DANRE | Acetolactate synthase-like protein OS=Danio rerio GN=ilvbl PE=2 SV=1 | 10 | 197 | 2.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O06335|ILVB2_MYCTU | Putative acetolactate synthase large subunit IlvB2 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ilvB2 PE=2 SV=1 | 48 | 312 | 9.0E-12 |
| sp|Q8BU33|ILVBL_MOUSE | Acetolactate synthase-like protein OS=Mus musculus GN=Ilvbl PE=1 SV=1 | 48 | 384 | 6.0E-08 |
| sp|P20906|MDLC_PSEPU | Benzoylformate decarboxylase OS=Pseudomonas putida GN=mdlC PE=1 SV=2 | 9 | 225 | 2.0E-07 |
| sp|B4S4J4|MEND_PROA2 | 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=menD PE=3 SV=1 | 5 | 271 | 2.0E-07 |
| sp|Q6NV04|ILVBL_DANRE | Acetolactate synthase-like protein OS=Danio rerio GN=ilvbl PE=2 SV=1 | 10 | 197 | 2.0E-07 |
| sp|Q9HUR2|MDLC_PSEAE | Benzoylformate decarboxylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mdlC PE=3 SV=1 | 1 | 174 | 6.0E-07 |
| sp|Q04789|ILVX_BACSU | Acetolactate synthase OS=Bacillus subtilis (strain 168) GN=alsS PE=2 SV=3 | 14 | 309 | 3.0E-06 |
| sp|A1L0T0|ILVBL_HUMAN | Acetolactate synthase-like protein OS=Homo sapiens GN=ILVBL PE=1 SV=2 | 48 | 384 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0000287 | magnesium ion binding | Yes |
| GO:0030976 | thiamine pyrophosphate binding | Yes |
| GO:0050662 | coenzyme binding | No |
| GO:0046872 | metal ion binding | No |
| GO:1901681 | sulfur compound binding | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0048037 | cofactor binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0043167 | ion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043168 | anion binding | No |
| GO:0019842 | vitamin binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3065 MYTASFAFFEAIREAGITHCFVNLGSDHPSMIEAMVKGQREAADRFPRIITCPSEMVAMSMADGFARRSGRPQCV IVHVDVGTQALGPAVHNASVGRAPILVFAGISPVTLEGEMRGSRSEFIHWMQDIPDQKAILGQYCRYAAEIKTGV NIKQMVNRALQFATSQPQGPVYLCGAREVMEAEIEPYSLDQALWGPVRLGGLPADAASTVARALARADRPLLVTG YSGRNHAIPRALTELADAVATLRVLDTGGCDMCLSAEHPAWLGTKYGVDDSIAEADVIVVLDCDVPWIPTRCKPR PDARVFHIDVDPLKQLMPLFYVQSESRFRADALASVEQILAELRAGDAAETLRARDRAGEEKARRQAHASKLASI GRAAEPLPDGRFGSGHLSRVLRAALYPRQHPADAAGLLDQLRRRWARLVRRRGAGH* |
| Coding | >Hirsu2|3065 ATGTATACCGCGTCCTTTGCCTTCTTCGAGGCCATCCGGGAGGCCGGTATCACCCACTGCTTCGTCAACCTGGGC TCCGACCACCCGAGCATGATCGAGGCCATGGTCAAGGGCCAGCGCGAGGCCGCCGACCGGTTTCCTCGCATCATC ACCTGTCCCAGCGAGATGGTCGCCATGTCCATGGCCGACGGCTTCGCCCGGCGCAGCGGCAGGCCGCAGTGCGTC ATCGTGCACGTCGACGTCGGCACCCAGGCGCTGGGCCCGGCCGTCCACAACGCGTCGGTCGGGCGCGCGCCCATC CTCGTCTTCGCCGGCATCTCGCCCGTTACGCTCGAGGGCGAGATGCGCGGCTCCCGCTCCGAGTTCATCCACTGG ATGCAGGATATCCCGGACCAGAAGGCCATCCTCGGCCAGTACTGCCGCTATGCCGCCGAGATCAAGACGGGCGTC AATATCAAGCAGATGGTGAACCGCGCGCTCCAGTTCGCGACCAGCCAGCCGCAGGGGCCCGTCTACCTGTGCGGC GCCCGGGAGGTCATGGAGGCGGAGATCGAGCCCTATTCCCTCGACCAGGCCCTCTGGGGCCCGGTCCGTCTGGGC GGCCTGCCGGCCGATGCGGCGAGCACTGTGGCCCGAGCCTTGGCGCGGGCCGACCGGCCGCTGCTCGTCACCGGC TACTCGGGCCGTAATCACGCGATCCCCCGAGCCTTGACCGAGCTGGCCGACGCCGTCGCCACCCTCCGCGTCCTC GACACGGGGGGCTGCGATATGTGCCTATCCGCCGAGCACCCTGCCTGGCTGGGGACCAAGTACGGCGTCGACGAC TCCATCGCCGAGGCCGACGTCATCGTGGTTTTGGACTGCGACGTTCCCTGGATCCCGACGCGCTGCAAACCTAGG CCCGATGCCCGCGTCTTCCATATCGACGTCGACCCCCTAAAGCAGCTGATGCCCCTCTTCTACGTCCAGTCCGAG TCACGGTTTCGGGCCGATGCGCTCGCCTCCGTGGAGCAGATCCTGGCCGAGCTCCGGGCCGGGGACGCGGCCGAG ACGCTCCGGGCCCGAGACCGGGCCGGCGAGGAGAAGGCTCGGCGGCAGGCGCACGCGTCCAAGCTCGCGAGCATC GGCAGGGCGGCCGAGCCGTTGCCCGACGGCCGCTTCGGCTCCGGGCACCTGAGCCGGGTGCTCCGGGCGGCGCTT TATCCACGACAACATCCAGCCGACGCTGCCGGGCTCCTGGATCAACTGCGGCGGCGGTGGGCTCGGCTGGTCCGG CGGCGGGGCGCTGGGCATTAA |
| Transcript | >Hirsu2|3065 ATGTATACCGCGTCCTTTGCCTTCTTCGAGGCCATCCGGGAGGCCGGTATCACCCACTGCTTCGTCAACCTGGGC TCCGACCACCCGAGCATGATCGAGGCCATGGTCAAGGGCCAGCGCGAGGCCGCCGACCGGTTTCCTCGCATCATC ACCTGTCCCAGCGAGATGGTCGCCATGTCCATGGCCGACGGCTTCGCCCGGCGCAGCGGCAGGCCGCAGTGCGTC ATCGTGCACGTCGACGTCGGCACCCAGGCGCTGGGCCCGGCCGTCCACAACGCGTCGGTCGGGCGCGCGCCCATC CTCGTCTTCGCCGGCATCTCGCCCGTTACGCTCGAGGGCGAGATGCGCGGCTCCCGCTCCGAGTTCATCCACTGG ATGCAGGATATCCCGGACCAGAAGGCCATCCTCGGCCAGTACTGCCGCTATGCCGCCGAGATCAAGACGGGCGTC AATATCAAGCAGATGGTGAACCGCGCGCTCCAGTTCGCGACCAGCCAGCCGCAGGGGCCCGTCTACCTGTGCGGC GCCCGGGAGGTCATGGAGGCGGAGATCGAGCCCTATTCCCTCGACCAGGCCCTCTGGGGCCCGGTCCGTCTGGGC GGCCTGCCGGCCGATGCGGCGAGCACTGTGGCCCGAGCCTTGGCGCGGGCCGACCGGCCGCTGCTCGTCACCGGC TACTCGGGCCGTAATCACGCGATCCCCCGAGCCTTGACCGAGCTGGCCGACGCCGTCGCCACCCTCCGCGTCCTC GACACGGGGGGCTGCGATATGTGCCTATCCGCCGAGCACCCTGCCTGGCTGGGGACCAAGTACGGCGTCGACGAC TCCATCGCCGAGGCCGACGTCATCGTGGTTTTGGACTGCGACGTTCCCTGGATCCCGACGCGCTGCAAACCTAGG CCCGATGCCCGCGTCTTCCATATCGACGTCGACCCCCTAAAGCAGCTGATGCCCCTCTTCTACGTCCAGTCCGAG TCACGGTTTCGGGCCGATGCGCTCGCCTCCGTGGAGCAGATCCTGGCCGAGCTCCGGGCCGGGGACGCGGCCGAG ACGCTCCGGGCCCGAGACCGGGCCGGCGAGGAGAAGGCTCGGCGGCAGGCGCACGCGTCCAAGCTCGCGAGCATC GGCAGGGCGGCCGAGCCGTTGCCCGACGGCCGCTTCGGCTCCGGGCACCTGAGCCGGGTGCTCCGGGCGGCGCTT TATCCACGACAACATCCAGCCGACGCTGCCGGGCTCCTGGATCAACTGCGGCGGCGGTGGGCTCGGCTGGTCCGG CGGCGGGGCGCTGGGCATTAA |
| Gene | >Hirsu2|3065 ATGTATACCGCGTCCTTTGCCTTCTTCGAGGCCATCCGGGAGGCCGGTATCACCCACTGCTTCGTCAACCTGGGC TCCGACCACCCGAGCATGATCGAGGCCATGGTCAAGGGCCAGCGCGAGGCCGCCGACCGGTTTCCTCGCATCATC ACCTGTCCCAGCGAGGTTCGTCCCCNNTGTTGTCCCCCCCCCCCCCCCCCTCTCTTCTCCCCCAAGCGCCGAAAG CGCCGGGCTGACTCGGTCCGGACACCCCGGGCTCCAGATGGTCGCCATGTCCATGGCCGACGGCTTCGCCCGGCG CAGCGGCAGGCCGCAGTGCGTCATCGTGCACGTCGACGTCGGCACCCAGGCGCTGGGCCCGGCCGTCCACAACGC GTCGGTCGGGCGCGCGCCCATCCTCGTCTTCGCCGGCATCTCGCCCGTTACGCTCGAGGGCGAGATGCGCGGCTC CCGCTCCGAGTTCATCCACTGGATGCAGGATATCCCGGACCAGAAGGCCATCCTCGGCCAGTACTGCCGCTATGC CGCCGAGATCAAGACGGGCGTCAATATCAAGCAGATGGTGAACCGCGCGCTCCAGTTCGCGACCAGCCAGCCGCA GGGGCCCGTCTACCTGTGCGGCGCCCGGGAGGTCATGGAGGCGGAGATCGAGCCCTATTCCCTCGACCAGGCCCT CTGGGGCCCGGTCCGTCTGGGCGGCCTGCCGGCCGATGCGGCGAGCACTGTGGCCCGAGCCTTGGCGCGGGCCGA CCGGCCGCTGCTCGTCACCGGCTACTCGGGCCGTAATCACGCGATCCCCCGAGCCTTGACCGAGCTGGCCGACGC CGTCGCCACCCTCCGCGTCCTCGACACGGGGGGCTGCGATATGTGCCTATCCGCCGAGCACCCTGCCTGGCTGGG GACCAAGTACGGCGTCGACGACTCCATCGCCGAGGCCGACGTCATCGTGGTTTTGGACTGCGACGTTCCCTGGAT CCCGACGCGCTGCAAACCTAGGCCCGATGCCCGCGTCTTCCATATCGACGTCGACCCCCTAAAGCAGCTGATGCC CCTCTTCTACGTCCAGTCCGAGTCACGGTTTCGGGCCGATGCGCTCGCCTCCGTGGAGCAGATCCTGGCCGAGCT CCGGGCCGGGGACGCGGCCGAGACGCTCCGGGCCCGAGACCGGGCCGGCGAGGAGAAGGCTCGGCGGCAGGCGCA CGCGTCCAAGCTCGCGAGCATCGGCAGGGCGGCCGAGCCGTTGCCCGACGGCCGCTTCGGCTCCGGGCACCTGAG CCGGGTGCTCCGGGCGGCGTGCCCGCAGGACACCATCTGGGCGGTCGAGGCCGTCACGAACACAGGCTTTATCCA CGACAACATCCAGCCGACGCTGCCGGGCTCCTGGATCAACTGCGGCGGCGGTGGGCTCGGCTGGTCCGGCGGCGG GGCGCTGGGCATTAA |