© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|3035 |
| Gene name | |
| Location | Contig_1770:2387..4899 |
| Strand | + |
| Gene length (bp) | 2512 |
| Transcript length (bp) | 2433 |
| Coding sequence length (bp) | 2433 |
| Protein length (aa) | 811 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13360 | PQQ_2 | PQQ-like domain | 1.3E-12 | 64 | 330 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25574|EMC1_YEAST | ER membrane protein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC1 PE=1 SV=1 | 427 | 809 | 4.0E-19 |
| sp|Q8N766|EMC1_HUMAN | ER membrane protein complex subunit 1 OS=Homo sapiens GN=EMC1 PE=1 SV=1 | 508 | 764 | 2.0E-12 |
| sp|Q5R7K6|EMC1_PONAB | ER membrane protein complex subunit 1 OS=Pongo abelii GN=EMC1 PE=2 SV=1 | 508 | 764 | 2.0E-11 |
| sp|Q8C7X2|EMC1_MOUSE | ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1 SV=1 | 508 | 764 | 2.0E-11 |
| sp|Q6NRB9|EMC1_XENLA | ER membrane protein complex subunit 1 OS=Xenopus laevis GN=emc1 PE=2 SV=1 | 508 | 764 | 5.0E-11 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P25574|EMC1_YEAST | ER membrane protein complex subunit 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=EMC1 PE=1 SV=1 | 427 | 809 | 4.0E-19 |
| sp|Q8N766|EMC1_HUMAN | ER membrane protein complex subunit 1 OS=Homo sapiens GN=EMC1 PE=1 SV=1 | 508 | 764 | 2.0E-12 |
| sp|Q5R7K6|EMC1_PONAB | ER membrane protein complex subunit 1 OS=Pongo abelii GN=EMC1 PE=2 SV=1 | 508 | 764 | 2.0E-11 |
| sp|Q8C7X2|EMC1_MOUSE | ER membrane protein complex subunit 1 OS=Mus musculus GN=Emc1 PE=1 SV=1 | 508 | 764 | 2.0E-11 |
| sp|Q6NRB9|EMC1_XENLA | ER membrane protein complex subunit 1 OS=Xenopus laevis GN=emc1 PE=2 SV=1 | 508 | 764 | 5.0E-11 |
| sp|Q5ZL00|EMC1_CHICK | ER membrane protein complex subunit 1 OS=Gallus gallus GN=EMC1 PE=2 SV=1 | 344 | 764 | 6.0E-11 |
| sp|O13981|EMC1_SCHPO | ER membrane protein complex subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=emc1 PE=3 SV=1 | 415 | 765 | 2.0E-09 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1189 | 0.0514 | 0.8143 | 0.0572 | 0.1284 | 0.0288 | 0.4347 | 0.3281 | 0.1706 | 0.0052 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 22 | 0.999338 |
| Orthofinder run ID | 4 |
| Orthogroup | 2293 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3035 MRRSLASGLLLGLSSLAAAVFRDEVGDIDFHYALVGLPQPDTTFFHRPRKEDKASLVYTLSDIGILAAVNPSNGE LVWRHQLAAGDDGGRDDAAPDRRGFLRAPDGEDWLAAAHGSSVQAWSALTGRNVWRVDFAGEVRDLEILELTESS RKDVLALFDEDGVTVLRRLHGGLGTVVWEFRENSRDVPLQVSNDIANVYVVSLHGAAGAYNLKVTSLEPATGARV DHWMVGLKGDIHGPADVAFVGANSAAPIVAWTNQGLTKLSVNVIGSKSKQDFALPPESVSVRVHAPHLAQSQTHF LAHIRIEEADQALPAHKAIVFHTDLKTSQIKVAYELPAFRGEGTYSTSSEGANVYFVQTTSDQTLIVSSDSHGIL ARWPNKQALDLHPAHAVTEVVKKAGSQDFAARSAILTKSDDWTMLRNGENDWTRREGLSDAVGAVWAEIPEAEDL AKVLADEAHTNPLSAYVHRVARHVDDLKYLPAYLAALPERLLGSIAGAEPSSTKQPLLRRDSFGFSKILVVVTRR GRVYGLDSGNHGRVIWSCNSFPLSMDRPLVLRGLVADDERGTVAMYGAGGWYAVFNASSGVALEVSVDQRRKKSG VSSTAVVYSESGKDLLPVGPDGLPAGDLPAGWDPEQTVVLRGEGETLRGVRFRAEGGDRVASQEMWRLPMRPGQK IVQVATPPSHDPIASIGRVLGDRRVLYKYLNPNSVVVAAADETTKTLSVQLVDTVSGQVLASQLHRGVDATKSIS CTMAENWYTCSFFGDHSVGDGDGDKAGRAVKGYQLVMTDLYESPAPDSRGPLGDAANFSR* |
| Coding | >Hirsu2|3035 ATGCGACGCTCGCTGGCCTCGGGCCTGCTCTTGGGCCTGTCGTCGCTCGCCGCCGCCGTCTTCCGGGACGAGGTC GGCGACATCGACTTCCACTACGCCCTCGTCGGCCTCCCCCAGCCCGACACCACCTTCTTCCACCGGCCGCGCAAG GAGGACAAGGCCAGCCTCGTCTACACCCTCAGCGACATCGGCATCCTCGCCGCCGTCAACCCGAGCAACGGCGAG CTGGTGTGGCGGCATCAGCTGGCGGCCGGCGACGACGGCGGCCGTGACGACGCCGCCCCGGACCGCCGCGGCTTC CTCCGGGCCCCCGACGGCGAGGACTGGCTGGCGGCCGCGCACGGGTCGAGCGTCCAGGCCTGGAGCGCGCTGACG GGCCGCAACGTGTGGCGCGTCGACTTCGCCGGCGAGGTCAGGGACCTGGAGATACTCGAGCTGACCGAGTCGTCG CGCAAGGACGTGCTGGCACTGTTCGACGAGGACGGCGTCACCGTCCTGCGCCGGCTGCACGGCGGCCTCGGCACC GTCGTCTGGGAGTTCCGCGAGAACAGCAGGGACGTGCCGCTGCAGGTGTCCAACGACATCGCCAACGTCTACGTC GTCAGCCTGCACGGCGCCGCCGGCGCCTACAACCTCAAGGTCACCTCGCTCGAGCCGGCCACGGGCGCCCGCGTC GACCACTGGATGGTCGGCCTCAAGGGCGACATCCACGGCCCGGCCGACGTGGCCTTCGTCGGCGCCAACTCGGCC GCGCCCATCGTCGCCTGGACCAACCAGGGCCTGACCAAGCTCAGCGTCAACGTCATCGGCAGCAAGTCCAAGCAG GACTTTGCCCTGCCGCCCGAGTCCGTCTCCGTCCGCGTCCACGCGCCCCATCTGGCCCAGTCGCAGACGCACTTC CTCGCCCACATCCGCATCGAGGAGGCCGACCAGGCTCTGCCGGCCCACAAGGCCATCGTCTTCCACACCGACCTC AAGACCAGCCAGATCAAGGTGGCCTACGAGCTGCCCGCCTTCCGCGGCGAGGGCACCTACTCCACCAGCTCCGAG GGCGCCAACGTCTACTTCGTCCAGACCACCAGCGACCAGACGCTCATCGTCTCGTCCGACTCGCACGGCATCCTC GCCCGCTGGCCGAACAAGCAGGCCCTCGACCTCCACCCCGCCCACGCCGTGACCGAGGTCGTCAAGAAGGCCGGC AGCCAAGACTTTGCCGCCCGCTCCGCCATCCTCACCAAGTCGGACGACTGGACCATGCTCCGCAACGGCGAGAAC GACTGGACCCGCCGCGAGGGCCTCTCCGACGCCGTCGGCGCCGTCTGGGCCGAGATACCCGAGGCCGAGGACCTG GCCAAGGTGCTGGCCGACGAGGCGCACACGAACCCGCTGTCGGCCTACGTCCACCGCGTCGCCCGCCACGTCGAC GACCTGAAATACCTCCCGGCCTACCTGGCCGCCCTCCCCGAGCGCCTGCTGGGCAGCATCGCCGGCGCCGAGCCG TCGTCGACCAAGCAGCCGCTCCTCCGCCGAGACAGCTTCGGCTTCAGCAAAATCCTCGTCGTCGTCACCCGCCGG GGGCGCGTCTACGGCCTCGACAGCGGGAACCACGGCCGCGTCATCTGGTCTTGCAACTCGTTCCCCCTCAGCATG GACAGGCCGCTGGTCCTCAGGGGGCTCGTCGCCGACGACGAGCGGGGGACCGTCGCCATGTACGGCGCCGGGGGG TGGTACGCCGTCTTCAACGCGAGCTCGGGCGTGGCCCTCGAGGTGTCGGTCGACCAGCGCCGCAAGAAGTCGGGC GTGTCCTCCACGGCCGTCGTCTACAGCGAGTCGGGCAAGGACCTGCTCCCCGTCGGACCCGACGGCCTGCCGGCG GGCGACCTCCCCGCCGGCTGGGACCCGGAGCAGACGGTCGTCCTCCGCGGCGAGGGCGAGACGCTCCGGGGCGTC AGGTTCCGTGCCGAGGGCGGTGACCGGGTGGCCAGCCAGGAGATGTGGCGGCTGCCGATGAGGCCCGGGCAGAAG ATTGTGCAGGTGGCGACGCCGCCCTCGCACGACCCCATCGCCTCGATCGGGCGCGTCCTCGGGGACCGCCGCGTG CTGTACAAGTACCTCAACCCCAACAGCGTCGTGGTGGCGGCGGCGGACGAGACGACCAAGACGCTGTCGGTCCAG CTCGTGGACACGGTCTCTGGCCAGGTGCTGGCGTCGCAGCTGCACCGGGGCGTGGACGCGACCAAGTCCATCTCG TGCACCATGGCCGAGAACTGGTACACGTGCTCCTTCTTCGGCGACCACAGCGTCGGCGACGGCGACGGCGACAAG GCGGGCCGGGCCGTCAAGGGCTACCAGCTGGTGATGACGGACCTGTACGAGTCGCCGGCGCCCGACAGCCGCGGG CCGCTGGGCGACGCGGCCAACTTCTCCCGCTGA |
| Transcript | >Hirsu2|3035 ATGCGACGCTCGCTGGCCTCGGGCCTGCTCTTGGGCCTGTCGTCGCTCGCCGCCGCCGTCTTCCGGGACGAGGTC GGCGACATCGACTTCCACTACGCCCTCGTCGGCCTCCCCCAGCCCGACACCACCTTCTTCCACCGGCCGCGCAAG GAGGACAAGGCCAGCCTCGTCTACACCCTCAGCGACATCGGCATCCTCGCCGCCGTCAACCCGAGCAACGGCGAG CTGGTGTGGCGGCATCAGCTGGCGGCCGGCGACGACGGCGGCCGTGACGACGCCGCCCCGGACCGCCGCGGCTTC CTCCGGGCCCCCGACGGCGAGGACTGGCTGGCGGCCGCGCACGGGTCGAGCGTCCAGGCCTGGAGCGCGCTGACG GGCCGCAACGTGTGGCGCGTCGACTTCGCCGGCGAGGTCAGGGACCTGGAGATACTCGAGCTGACCGAGTCGTCG CGCAAGGACGTGCTGGCACTGTTCGACGAGGACGGCGTCACCGTCCTGCGCCGGCTGCACGGCGGCCTCGGCACC GTCGTCTGGGAGTTCCGCGAGAACAGCAGGGACGTGCCGCTGCAGGTGTCCAACGACATCGCCAACGTCTACGTC GTCAGCCTGCACGGCGCCGCCGGCGCCTACAACCTCAAGGTCACCTCGCTCGAGCCGGCCACGGGCGCCCGCGTC GACCACTGGATGGTCGGCCTCAAGGGCGACATCCACGGCCCGGCCGACGTGGCCTTCGTCGGCGCCAACTCGGCC GCGCCCATCGTCGCCTGGACCAACCAGGGCCTGACCAAGCTCAGCGTCAACGTCATCGGCAGCAAGTCCAAGCAG GACTTTGCCCTGCCGCCCGAGTCCGTCTCCGTCCGCGTCCACGCGCCCCATCTGGCCCAGTCGCAGACGCACTTC CTCGCCCACATCCGCATCGAGGAGGCCGACCAGGCTCTGCCGGCCCACAAGGCCATCGTCTTCCACACCGACCTC AAGACCAGCCAGATCAAGGTGGCCTACGAGCTGCCCGCCTTCCGCGGCGAGGGCACCTACTCCACCAGCTCCGAG GGCGCCAACGTCTACTTCGTCCAGACCACCAGCGACCAGACGCTCATCGTCTCGTCCGACTCGCACGGCATCCTC GCCCGCTGGCCGAACAAGCAGGCCCTCGACCTCCACCCCGCCCACGCCGTGACCGAGGTCGTCAAGAAGGCCGGC AGCCAAGACTTTGCCGCCCGCTCCGCCATCCTCACCAAGTCGGACGACTGGACCATGCTCCGCAACGGCGAGAAC GACTGGACCCGCCGCGAGGGCCTCTCCGACGCCGTCGGCGCCGTCTGGGCCGAGATACCCGAGGCCGAGGACCTG GCCAAGGTGCTGGCCGACGAGGCGCACACGAACCCGCTGTCGGCCTACGTCCACCGCGTCGCCCGCCACGTCGAC GACCTGAAATACCTCCCGGCCTACCTGGCCGCCCTCCCCGAGCGCCTGCTGGGCAGCATCGCCGGCGCCGAGCCG TCGTCGACCAAGCAGCCGCTCCTCCGCCGAGACAGCTTCGGCTTCAGCAAAATCCTCGTCGTCGTCACCCGCCGG GGGCGCGTCTACGGCCTCGACAGCGGGAACCACGGCCGCGTCATCTGGTCTTGCAACTCGTTCCCCCTCAGCATG GACAGGCCGCTGGTCCTCAGGGGGCTCGTCGCCGACGACGAGCGGGGGACCGTCGCCATGTACGGCGCCGGGGGG TGGTACGCCGTCTTCAACGCGAGCTCGGGCGTGGCCCTCGAGGTGTCGGTCGACCAGCGCCGCAAGAAGTCGGGC GTGTCCTCCACGGCCGTCGTCTACAGCGAGTCGGGCAAGGACCTGCTCCCCGTCGGACCCGACGGCCTGCCGGCG GGCGACCTCCCCGCCGGCTGGGACCCGGAGCAGACGGTCGTCCTCCGCGGCGAGGGCGAGACGCTCCGGGGCGTC AGGTTCCGTGCCGAGGGCGGTGACCGGGTGGCCAGCCAGGAGATGTGGCGGCTGCCGATGAGGCCCGGGCAGAAG ATTGTGCAGGTGGCGACGCCGCCCTCGCACGACCCCATCGCCTCGATCGGGCGCGTCCTCGGGGACCGCCGCGTG CTGTACAAGTACCTCAACCCCAACAGCGTCGTGGTGGCGGCGGCGGACGAGACGACCAAGACGCTGTCGGTCCAG CTCGTGGACACGGTCTCTGGCCAGGTGCTGGCGTCGCAGCTGCACCGGGGCGTGGACGCGACCAAGTCCATCTCG TGCACCATGGCCGAGAACTGGTACACGTGCTCCTTCTTCGGCGACCACAGCGTCGGCGACGGCGACGGCGACAAG GCGGGCCGGGCCGTCAAGGGCTACCAGCTGGTGATGACGGACCTGTACGAGTCGCCGGCGCCCGACAGCCGCGGG CCGCTGGGCGACGCGGCCAACTTCTCCCGCTGA |
| Gene | >Hirsu2|3035 ATGCGACGCTCGCTGGCCTCGGGCCTGCTCTTGGGCCTGTCGTCGCTCGCCGCCGCCGTCTTCCGGGACGAGGTC GGCGACATCGACTTCCACTACGCCCTCGTCGGCCTCCCCCAGCCCGACACCACCTTCTTCCACCGGCCGCGCAAG GAGGACAAGGCCAGCCTCGTCTACACCCTCAGCGACATCGGCATCCTCGCCGCCGTCAACCCGAGCAACGGCGAG CTGGTGTGGCGGCATCAGCTGGCGGCCGGCGACGACGGCGGCCGTGACGACGCCGCCCCGGACCGCCGCGGCTTC CTCCGGGCCCCCGACGGCGAGGACTGGCTGGCGGCCGCGCACGGGTCGAGCGTCCAGGCCTGGAGCGCGCTGACG GGCCGCAACGTGTGGCGCGTCGACTTCGCCGGCGAGGTCAGGGACCTGGAGATACTCGAGCTGACCGAGTCGTCG CGCAAGGACGTGCTGGCACTGTTCGACGAGGACGGCGTCACCGTCCTGCGCCGGCTGCACGGCGGCCTCGGCACC GTCGTCTGGGAGTTCCGCGAGAACAGCAGGGACGTGCCGCTGCAGGTGTCCAACGACATCGCCAACGTCTACGTC GTCAGCCTGCACGGCGCCGCCGGCGCCTACAACCTCAAGGTCACCTCGCTCGAGCCGGCCACGGGCGCCCGCGTC GACCACTGGATGGTCGGCCTCAAGGGCGACATCCACGGCCCGGCCGACGTGGCCTTCGTCGGCGCCAACTCGGCC GCGCCCATCGTCGCCTGGACCAACCAGGGCCTGACCAAGCTCAGCGTCAACGTCATCGGCAGCAAGTCCAAGCAG GACTTTGCCCTGCCGCCCGAGTCCGTCTCCGTCCGCGTCCACGCGCCCCATCTGGCCCAGTCGCAGACGCACTTC CTCGCCCACATCCGCATCGAGGAGGCCGACCAGGCTCTGCCGGCCCACAAGGCCATCGTCTTCCACACCGACCTC AAGACCAGCCAGATCAAGGTGGCCTACGAGCTGCCCGCCTTCCGCGGCGAGGGCACCTACTCCACCAGCTCCGAG GGCGCCAACGTCTACTTCGTCCAGACCACCAGCGACCAGACGCTCATCGTCTCGTCCGACTCGCACGGCATCCTC GCCCGCTGGCCGAACAAGCAGGCCCTCGACCTCCACCCCGCCCACGCCGTGACCGAGGTCGTCAAGAAGGCCGGC AGCCAAGACTTTGCCGCCCGCTCCGCCATCCTCACCAAGTCGGACGACTGGACCATGCTCCGCAACGGCGAGAAC GACTGGACCCGCCGCGAGGGCCTCTCCGACGCCGTCGGCGCCGTCTGGGCCGAGATACCCGAGGCCGAGGACCTG GCCAAGGTGCTGGCCGACGAGGCGCACACGAACCCGCTGTCGGCCTACGTCCACCGCGTCGCCCGCCACGTCGAC GACCTGAAATACCTCCCGGCCTACCTGGCCGCCCTCCCCGAGCGCCTGCTGGGCAGCATCGCCGGCGCCGAGCCG TCGTCGACCAAGCAGCCGCTCCTCCGCCGAGACAGCTTCGGCTTCAGCAAAATCCTCGTCGTCGTCACCCGCCGG GGGCGCGTCTACGGCCTCGACAGCGGGAACCACGGCCGCGTCATCTGGTCTTGCAACTCGTTCCCCCTCAGCATG GACAGGCCGCTGGTCCTCAGGGGGCTCGTCGCCGACGACGAGCGGGGGACCGTCGCCATGTACGGCGCCGGGGGG TGGTACGCCGTCTTCAACGCGAGCTCGGGCGTGGCCCTCGAGGTGTCGGTCGACCAGCGCCGCAAGAAGTCGGGC GTGTCCTCCACGGCCGTCGTCTACAGCGAGTCGGGCAAGGACCTGCTCCCCGTCGGACCCGACGGCCTGCCGGCG GGCGACCTCCCCGCCGGCTGGGACCCGGAGCAGACGGTCGTCCTCCGCGGCGAGGGCGAGACGCTCCGGGGCGTC AGGTTCCGTGCCGAGGGCGGTGACCGGGTGGCCAGCCAGGAGATGTGGCGGCTGCCGATGAGGCCCGGGCAGAAG ATTGTGCAGGTGGCGACGCCGCCCTCGCACGACCCCATCGCCTCGATCGGGCGCGTCCTCGGGGACCGCCGCGTG CTGTACAAGTACCTCAACCCCAACAGCGTCGTGGTGGCGGCGGCGGACGAGACGACCAAGACGCTGTCGGTCCAG CTCGTGGACACGGTCTCTGGCCAGGTGCTGGCGTCGCAGCTGCACCGGGGCGTGGACGCGACCAAGTCCATCTCG TGCACCATGGCCGAGAACTGGTACACGTGCTCCTTCTTCGGCGACCACAGCGTCGGCGACGGCGACGGCGACAAG GCGGGCCGGGCCGTCAAGGGCTACCAGCTGGTGATGACGGACCTGTACGAGTCGCCGGCGCCCGACAGCCGCGGG CCGCTGGGCGACGCGGCCAACTTCTCGTCGCTGGCGCCGATCGAGGACGCGACGGGCGGGGTGCCGCTGCCGTGG GCCGTGTCGCAGGCCTTCGTCGTGTCGCAGCCGCTGA |