Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|3028
Gene name
LocationContig_177:14212..14581
Strand+
Gene length (bp)369
Transcript length (bp)369
Coding sequence length (bp)369
Protein length (aa) 123

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF02666 PS_Dcarbxylase Phosphatidylserine decarboxylase 2.2E-14 2 113

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0004609 phosphatidylserine decarboxylase activity Yes
GO:0008654 phospholipid biosynthetic process Yes
GO:0006644 phospholipid metabolic process No
GO:0009987 cellular process No
GO:0003824 catalytic activity No
GO:0044249 cellular biosynthetic process No
GO:0009058 biosynthetic process No
GO:1901576 organic substance biosynthetic process No
GO:0016830 carbon-carbon lyase activity No
GO:0019637 organophosphate metabolic process No
GO:0006796 phosphate-containing compound metabolic process No
GO:0044237 cellular metabolic process No
GO:0090407 organophosphate biosynthetic process No
GO:0006793 phosphorus metabolic process No
GO:0071704 organic substance metabolic process No
GO:0006629 lipid metabolic process No
GO:0044238 primary metabolic process No
GO:0008152 metabolic process No
GO:0016829 lyase activity No
GO:0008150 biological_process No
GO:0008610 lipid biosynthetic process No
GO:0044255 cellular lipid metabolic process No
GO:0003674 molecular_function No
GO:0016831 carboxy-lyase activity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 27 0.45

Transmembrane Domains

Domain # Start End Length
1 62 84 22

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|3028
MFAGGTVYQAILSLLSYHRWHGPVSGAVVRAFVQQEPYYGVPFFCQGQCESEGYLAAVATRAIIVIAAGNPLLGL
VTFVVVGMVEVRSCEITCMVRSGQRVAKGQRTGMFHNGGAGYCLLLR*
Coding >Hirsu2|3028
ATGTTCGCCGGCGGCACCGTCTACCAAGCCATCCTGTCGCTCCTCTCTTATCACCGGTGGCACGGCCCCGTTTCA
GGCGCCGTCGTTCGCGCCTTTGTGCAGCAAGAGCCGTACTACGGTGTACCGTTCTTCTGCCAGGGTCAGTGTGAG
TCCGAAGGGTACCTGGCGGCCGTTGCCACCCGGGCCATCATCGTCATAGCAGCCGGAAACCCGCTGCTAGGCCTG
GTGACCTTTGTGGTCGTGGGCATGGTCGAGGTGCGCTCGTGCGAGATTACATGTATGGTGCGCTCGGGCCAGCGC
GTTGCAAAGGGGCAGCGGACGGGCATGTTCCACAATGGCGGAGCGGGCTATTGCTTGTTGCTACGTTAA
Transcript >Hirsu2|3028
ATGTTCGCCGGCGGCACCGTCTACCAAGCCATCCTGTCGCTCCTCTCTTATCACCGGTGGCACGGCCCCGTTTCA
GGCGCCGTCGTTCGCGCCTTTGTGCAGCAAGAGCCGTACTACGGTGTACCGTTCTTCTGCCAGGGTCAGTGTGAG
TCCGAAGGGTACCTGGCGGCCGTTGCCACCCGGGCCATCATCGTCATAGCAGCCGGAAACCCGCTGCTAGGCCTG
GTGACCTTTGTGGTCGTGGGCATGGTCGAGGTGCGCTCGTGCGAGATTACATGTATGGTGCGCTCGGGCCAGCGC
GTTGCAAAGGGGCAGCGGACGGGCATGTTCCACAATGGCGGAGCGGGCTATTGCTTGTTGCTACGTTAA
Gene >Hirsu2|3028
ATGTTCGCCGGCGGCACCGTCTACCAAGCCATCCTGTCGCTCCTCTCTTATCACCGGTGGCACGGCCCCGTTTCA
GGCGCCGTCGTTCGCGCCTTTGTGCAGCAAGAGCCGTACTACGGTGTACCGTTCTTCTGCCAGGGTCAGTGTGAG
TCCGAAGGGTACCTGGCGGCCGTTGCCACCCGGGCCATCATCGTCATAGCAGCCGGAAACCCGCTGCTAGGCCTG
GTGACCTTTGTGGTCGTGGGCATGGTCGAGGTGCGCTCGTGCGAGATTACATGTATGGTGCGCTCGGGCCAGCGC
GTTGCAAAGGGGCAGCGGACGGGCATGTTCCACAATGGCGGAGCGGGCTATTGCTTGTTGCTACGTTAA

© 2020 - Robin Ohm - Utrecht University - The Netherlands

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