© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3025 |
| Gene name | |
| Location | Contig_177:5147..6328 |
| Strand | - |
| Gene length (bp) | 1181 |
| Transcript length (bp) | 951 |
| Coding sequence length (bp) | 951 |
| Protein length (aa) | 317 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | 0.0824 | 0.081 | 0.8923 | 0.4187 | 0.0966 | 0.0079 | 0.1531 | 0.08 | 0.1171 | 0.0027 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 16 | 0.569959 |
| Orthofinder run ID | 4 |
| Orthogroup | 7551 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3025 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3025 MKDLLLLQALAGGVIAAQQMTLPVVNHAAVVNALNPSDSGYKVCAMANKKLQDCASQAGGLESMSTAAPDAVAKC ACCEGNRAVGASYSSCSSYLAQEVPSMSAQYSAFGNLYSICEANGRVCTGGGPSLTGKPASATGAPAPTGTVSES LGSLAPACNSMVGLFESCSSNIQGFTDLPLGEQAPCYCCLTARGKAVWTDEFDKYAQTCRDWAKGGGPQTVYSLA STLAGFCKKFTNACAASSTLPTTEATATSSPSTEAETTTQADSTGANANQASRTTSTRAPTATGAAASHLRVGSS AAAGLVAALAAMAMVI* |
| Coding | >Hirsu2|3025 ATGAAGGACCTTCTGCTTCTGCAGGCCCTGGCTGGCGGCGTCATTGCTGCTCAGCAGATGACGCTGCCTGTCGTC AACCATGCCGCCGTGGTCAACGCGCTCAATCCGTCCGACTCGGGATACAAGGTCTGTGCCATGGCCAACAAGAAA CTGCAAGACTGTGCCAGCCAGGCCGGCGGTCTGGAATCCATGTCGACGGCGGCTCCGGACGCCGTCGCCAAGTGT GCTTGCTGCGAGGGCAACCGTGCCGTCGGAGCGAGCTACTCGTCGTGTTCGTCGTACCTGGCCCAGGAGGTGCCC TCCATGTCGGCTCAGTACTCAGCTTTCGGCAATCTGTACAGCATCTGCGAAGCCAACGGCCGCGTCTGTACCGGC GGCGGGCCCAGCCTCACAGGCAAGCCCGCCTCGGCCACCGGAGCTCCCGCACCGACCGGCACCGTTTCCGAATCC CTCGGCTCCCTCGCGCCGGCCTGCAACTCCATGGTCGGCCTGTTCGAGTCGTGCTCGTCCAACATCCAAGGCTTC ACAGATCTTCCTCTTGGCGAGCAGGCTCCCTGCTACTGCTGCCTCACTGCCCGCGGAAAGGCCGTCTGGACCGAC GAGTTTGACAAGTACGCCCAGACGTGCCGCGACTGGGCCAAGGGCGGCGGGCCACAGACGGTATATTCGCTTGCC AGTACGCTTGCAGGCTTCTGCAAGAAGTTCACGAACGCGTGCGCCGCGAGCTCTACCTTGCCCACGACCGAAGCC ACGGCTACAAGCTCGCCTTCTACCGAGGCCGAGACGACGACCCAGGCGGACAGCACGGGCGCCAACGCCAACCAG GCCAGCCGGACTACTTCCACCAGGGCCCCGACAGCGACCGGGGCTGCAGCCTCCCACTTGCGTGTCGGCTCGTCC GCCGCGGCCGGTCTGGTTGCTGCTCTCGCCGCCATGGCCATGGTGATTTGA |
| Transcript | >Hirsu2|3025 ATGAAGGACCTTCTGCTTCTGCAGGCCCTGGCTGGCGGCGTCATTGCTGCTCAGCAGATGACGCTGCCTGTCGTC AACCATGCCGCCGTGGTCAACGCGCTCAATCCGTCCGACTCGGGATACAAGGTCTGTGCCATGGCCAACAAGAAA CTGCAAGACTGTGCCAGCCAGGCCGGCGGTCTGGAATCCATGTCGACGGCGGCTCCGGACGCCGTCGCCAAGTGT GCTTGCTGCGAGGGCAACCGTGCCGTCGGAGCGAGCTACTCGTCGTGTTCGTCGTACCTGGCCCAGGAGGTGCCC TCCATGTCGGCTCAGTACTCAGCTTTCGGCAATCTGTACAGCATCTGCGAAGCCAACGGCCGCGTCTGTACCGGC GGCGGGCCCAGCCTCACAGGCAAGCCCGCCTCGGCCACCGGAGCTCCCGCACCGACCGGCACCGTTTCCGAATCC CTCGGCTCCCTCGCGCCGGCCTGCAACTCCATGGTCGGCCTGTTCGAGTCGTGCTCGTCCAACATCCAAGGCTTC ACAGATCTTCCTCTTGGCGAGCAGGCTCCCTGCTACTGCTGCCTCACTGCCCGCGGAAAGGCCGTCTGGACCGAC GAGTTTGACAAGTACGCCCAGACGTGCCGCGACTGGGCCAAGGGCGGCGGGCCACAGACGGTATATTCGCTTGCC AGTACGCTTGCAGGCTTCTGCAAGAAGTTCACGAACGCGTGCGCCGCGAGCTCTACCTTGCCCACGACCGAAGCC ACGGCTACAAGCTCGCCTTCTACCGAGGCCGAGACGACGACCCAGGCGGACAGCACGGGCGCCAACGCCAACCAG GCCAGCCGGACTACTTCCACCAGGGCCCCGACAGCGACCGGGGCTGCAGCCTCCCACTTGCGTGTCGGCTCGTCC GCCGCGGCCGGTCTGGTTGCTGCTCTCGCCGCCATGGCCATGGTGATTTGA |
| Gene | >Hirsu2|3025 ATGAAGGACCTTCTGCTTCTGCAGGCCCTGGCTGGCGGCGTCATTGCTGCTCAGCAGATGACGCTGCCTGTCGTC AACCATGCCGCCGTGGTCAACGCGCTCAATCCGTCCGACTCGGGATACAAGGTCTGTGCCATGGCCAACAAGAAA CTGCAAGACTGTGCCAGCCAGGCCGGCGGTCTGGAATCCATGTCGACGGCGGCTCCGGACGCCGTCGCCAAGTGT GCTTGCTGCGAGGGCAACCGTGCCGTCGGAGCGAGCTACTCGTCGTGTTCGTCGTACCTGGCCCAGGAGGTGCCC TCCATGTCGGCTCAGTACTCAGGTCAGTCTTCTCCGGAGGCGGAACGATATCGCCCGACCTCCTGTCACGACCTG CCACGAGAGGTGAGCTGGCCCTCCTGACTCGGCCGCAGCTTTCGGCAATCTGTACAGCATCTGCGAAGCCAACGG CCGCGTCTGTACCGGCGGCGGGCCCAGCCTCACAGGCAAGCCCGCCTCGGCCACCGGAGCTCCCGCACCGACCGG CACCGTTTCCGAATCCCTCGGCTCCCTCGCGCCGGCCTGCAACTCCATGGTCGGCCTGTTCGAGTCGTGCTCGTC CAACATCCAAGGCTTCACAGATCTTCCTCTTGGCGAGCAGGCTCCCTGCTACTGGTGCGTGCCAGCCCCGGGGCG GATCCCTCCCTCATCCGATGCGACGGCCGTGGCTGACGCGCAGAGAAAACAGCTGCCTCACTGCCCGCGGAAAGG CCGTCTGGACCGACGAGTTTGACAAGTACGCCCAGACGTGCCGCGACTGGGCCAAGGGCGGCGGGCCACAGACGG TATATTCGCGTTCGTCCAGTCCCTCCACGTCCCGTCTCATCCCCCCCGCCGTGATCCGGGCTGACCTCTTTGTAG TTGCCAGTACGCTTGCAGGCTTCTGCAAGAAGTTCACGAACGCGTGCGCCGCGAGCTCTACCTTGCCCACGACCG AAGCCACGGCTACAAGCTCGCCTTCTACCGAGGCCGAGACGACGACCCAGGCGGACAGCACGGGCGCCAACGCCA ACCAGGCCAGCCGGACTACTTCCACCAGGGCCCCGACAGCGACCGGGGCTGCAGCCTCCCACTTGCGTGTCGGCT CGTCCGCCGCGGCCGGTCTGGTTGCTGCTCTCGCCGCCATGGCCATGGTGATTTGA |