Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|301
Gene name
LocationContig_1057:8711..9329
Strand-
Gene length (bp)618
Transcript length (bp)567
Coding sequence length (bp)567
Protein length (aa) 189

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus Nuclear export signal 0.6614 0.6648 0.0275 0.2069 0.1095 0.0802 0.3467 0.5085 0.1282 0.1675

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

No expression data available for this genome

Orthologs

Orthofinder run ID4
Orthogroup6554
Change Orthofinder run
Species Protein ID
Ophiocordyceps subramaniannii Hirsu2|2216
Ophiocordyceps subramaniannii Hirsu2|301 (this protein)
Ophiocordyceps subramaniannii Hirsu2|4323
Ophiocordyceps subramaniannii Hirsu2|8922

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|301
MDHLVFGTNGFTGDSQPADIPDNTEPPHLDCDTSTVPSSSPSTADLGPGQPALNPEAPCFDFGVSTGTDDGLLPS
GYILPLNDHSFQYGMTANDEIKWMITSLASRLDTLELAVSMGNIQTGQVQDGVSEILRRLSTAEDMIKTIESLKK
SLKELIHSLVLHLLGGEGVDDVEIQQPYVCEELHSQAP*
Coding >Hirsu2|301
ATGGATCACCTAGTATTTGGCACCAACGGCTTTACGGGCGATTCCCAACCAGCCGATATTCCCGACAATACTGAA
CCTCCTCACTTGGACTGTGACACCTCCACGGTTCCATCAAGCTCACCATCCACGGCTGACTTGGGTCCTGGCCAG
CCGGCTTTGAACCCTGAAGCCCCTTGTTTCGACTTTGGAGTCTCTACTGGTACAGACGATGGGCTACTGCCTAGT
GGATATATTCTACCACTTAATGACCATTCTTTCCAGTACGGAATGACGGCAAACGATGAGATAAAATGGATGATT
ACCAGTTTAGCGTCTCGTCTAGATACTTTAGAGCTTGCGGTATCGATGGGCAATATACAGACGGGTCAAGTGCAA
GATGGAGTTTCTGAGATACTCAGGCGCTTGTCAACCGCTGAAGATATGATCAAGACGATAGAGAGCCTGAAGAAG
AGCCTTAAAGAGCTTATTCATTCTTTGGTGCTTCATCTTTTAGGCGGCGAGGGCGTCGACGATGTCGAGATACAA
CAACCTTATGTGTGTGAAGAGCTACACTCACAGGCGCCTTGA
Transcript >Hirsu2|301
ATGGATCACCTAGTATTTGGCACCAACGGCTTTACGGGCGATTCCCAACCAGCCGATATTCCCGACAATACTGAA
CCTCCTCACTTGGACTGTGACACCTCCACGGTTCCATCAAGCTCACCATCCACGGCTGACTTGGGTCCTGGCCAG
CCGGCTTTGAACCCTGAAGCCCCTTGTTTCGACTTTGGAGTCTCTACTGGTACAGACGATGGGCTACTGCCTAGT
GGATATATTCTACCACTTAATGACCATTCTTTCCAGTACGGAATGACGGCAAACGATGAGATAAAATGGATGATT
ACCAGTTTAGCGTCTCGTCTAGATACTTTAGAGCTTGCGGTATCGATGGGCAATATACAGACGGGTCAAGTGCAA
GATGGAGTTTCTGAGATACTCAGGCGCTTGTCAACCGCTGAAGATATGATCAAGACGATAGAGAGCCTGAAGAAG
AGCCTTAAAGAGCTTATTCATTCTTTGGTGCTTCATCTTTTAGGCGGCGAGGGCGTCGACGATGTCGAGATACAA
CAACCTTATGTGTGTGAAGAGCTACACTCACAGGCGCCTTGA
Gene >Hirsu2|301
ATGGATCACCTAGTATTTGGCACCAACGGCTTTACGGGCGATTCCCAACCAGCCGATATTCCCGACAATACTGAA
CCTCCTCACTTGGACTGTGACACCTCCACGGTTCCATCAAGCTCACCATCCACGGCTGACTTGGGTCCTGGCCAG
CCGGCTTTGAACCCTGAAGCCCCTTGTTTCGACTTTGGAGTCTCTACTGGTACAGACGATGGGCTACTGCCTAGT
GGATATATTCTACCACTTAATGACCATTCTTTCCAGTACGGAATGACGGCAAACGATGAGATAAAATGGTAAGTC
TTTAGGACTCCGGATTACCATGAAGTAGCTAATACATATACCAGGATGATTACCAGTTTAGCGTCTCGTCTAGAT
ACTTTAGAGCTTGCGGTATCGATGGGCAATATACAGACGGGTCAAGTGCAAGATGGAGTTTCTGAGATACTCAGG
CGCTTGTCAACCGCTGAAGATATGATCAAGACGATAGAGAGCCTGAAGAAGAGCCTTAAAGAGCTTATTCATTCT
TTGGTGCTTCATCTTTTAGGCGGCGAGGGCGTCGACGATGTCGAGATACAACAACCTTATGTGTGTGAAGAGCTA
CACTCACAGGCGCCTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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