© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Hirsu2|3004 |
| Gene name | |
| Location | Contig_176:26398..26696 |
| Strand | - |
| Gene length (bp) | 298 |
| Transcript length (bp) | 243 |
| Coding sequence length (bp) | 243 |
| Protein length (aa) | 81 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.0645 | 0.0476 | 0.9713 | 0.0675 | 0.0724 | 0.006 | 0.0562 | 0.0299 | 0.0196 | 0.0021 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 20 | 0.999432 |
| Orthofinder run ID | 4 |
| Orthogroup | 9230 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|3004 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|3004 MVRIAAAVLLAFAATGMCHAGHNNAAGARGAAAAAAGPGLRNPAAAGFGQRGGIPRVPRSFDDADIEKRQDAAGK SEADI* |
| Coding | >Hirsu2|3004 ATGGTTCGCATCGCTGCTGCTGTTCTTCTTGCATTCGCCGCCACCGGTATGTGCCACGCGGGCCACAACAATGCC GCCGGCGCGAGGGGTGCCGCCGCCGCCGCCGCCGGCCCGGGGTTGCGCAACCCAGCCGCCGCGGGCTTTGGTCAG AGAGGCGGCATCCCTAGAGTCCCTCGGTCCTTTGACGACGCGGATATCGAGAAGCGTCAGGACGCGGCCGGTAAA AGCGAGGCGGATATCTAG |
| Transcript | >Hirsu2|3004 ATGGTTCGCATCGCTGCTGCTGTTCTTCTTGCATTCGCCGCCACCGGTATGTGCCACGCGGGCCACAACAATGCC GCCGGCGCGAGGGGTGCCGCCGCCGCCGCCGCCGGCCCGGGGTTGCGCAACCCAGCCGCCGCGGGCTTTGGTCAG AGAGGCGGCATCCCTAGAGTCCCTCGGTCCTTTGACGACGCGGATATCGAGAAGCGTCAGGACGCGGCCGGTAAA AGCGAGGCGGATATCTAG |
| Gene | >Hirsu2|3004 ATGGTTCGCATCGCTGCTGCTGTTCTTCTTGCATGTACGCTGCTCTAATCCCCTCCATCATCCTGGCTCTCTCAC TGACAGTTTCTCAGTCGCCGCCACCGGTATGTGCCACGCGGGCCACAACAATGCCGCCGGCGCGAGGGGTGCCGC CGCCGCCGCCGCCGGCCCGGGGTTGCGCAACCCAGCCGCCGCGGGCTTTGGTCAGAGAGGCGGCATCCCTAGAGT CCCTCGGTCCTTTGACGACGCGGATATCGAGAAGCGTCAGGACGCGGCCGGTAAAAGCGAGGCGGATATCTAG |