© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2993 |
| Gene name | |
| Location | Contig_1756:2300..3988 |
| Strand | - |
| Gene length (bp) | 1688 |
| Transcript length (bp) | 1167 |
| Coding sequence length (bp) | 1167 |
| Protein length (aa) | 389 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8.1E-15 | 15 | 83 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.4E-15 | 129 | 199 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 1.6E-17 | 290 | 358 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 9 | 365 | 2.0E-86 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 15 | 366 | 5.0E-41 |
| sp|P25555|GBP2_YEAST | Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1 SV=1 | 15 | 364 | 7.0E-40 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 9 | 209 | 7.0E-31 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 14 | 205 | 2.0E-26 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 9 | 365 | 2.0E-86 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 15 | 366 | 5.0E-41 |
| sp|P25555|GBP2_YEAST | Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1 SV=1 | 15 | 364 | 7.0E-40 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 9 | 209 | 7.0E-31 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 14 | 205 | 2.0E-26 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 14 | 208 | 1.0E-25 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 14 | 205 | 3.0E-25 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 14 | 208 | 7.0E-25 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 14 | 208 | 1.0E-24 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 128 | 362 | 9.0E-19 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 128 | 362 | 2.0E-17 |
| sp|Q9FXA2|PABP8_ARATH | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 | 15 | 364 | 7.0E-17 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 15 | 364 | 2.0E-16 |
| sp|P38922|HRB1_YEAST | Protein HRB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRB1 PE=1 SV=2 | 3 | 202 | 3.0E-16 |
| sp|P49314|ROC2_NICPL | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 128 | 361 | 6.0E-15 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 128 | 361 | 1.0E-14 |
| sp|Q08170|SRSF4_HUMAN | Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4 PE=1 SV=2 | 14 | 206 | 2.0E-14 |
| sp|Q8VE97|SRSF4_MOUSE | Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4 PE=2 SV=1 | 14 | 206 | 4.0E-14 |
| sp|P49314|ROC2_NICPL | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 11 | 202 | 2.0E-13 |
| sp|Q08937|ROC2_NICSY | 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 11 | 202 | 3.0E-13 |
| sp|Q04836|CP31A_ARATH | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=CP31A PE=1 SV=1 | 11 | 202 | 4.0E-13 |
| sp|P19682|ROC3_NICSY | 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 11 | 202 | 1.0E-12 |
| sp|G3V6S8|SRSF6_RAT | Serine/arginine-rich splicing factor 6 OS=Rattus norvegicus GN=Srsf6 PE=1 SV=1 | 14 | 210 | 1.0E-11 |
| sp|Q3TWW8|SRSF6_MOUSE | Serine/arginine-rich splicing factor 6 OS=Mus musculus GN=Srsf6 PE=1 SV=1 | 14 | 210 | 1.0E-11 |
| sp|P0CB38|PAB4L_HUMAN | Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1 | 5 | 192 | 1.0E-11 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 128 | 208 | 2.0E-11 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 128 | 208 | 2.0E-11 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 128 | 208 | 2.0E-11 |
| sp|P28644|ROC1_SPIOL | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1 | 11 | 202 | 2.0E-11 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 15 | 192 | 2.0E-11 |
| sp|Q13247|SRSF6_HUMAN | Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6 PE=1 SV=2 | 14 | 210 | 2.0E-11 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 123 | 208 | 3.0E-11 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 8 | 91 | 4.0E-11 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 8 | 91 | 4.0E-11 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 8 | 91 | 5.0E-11 |
| sp|Q13310|PABP4_HUMAN | Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1 | 15 | 202 | 7.0E-11 |
| sp|Q3B7L6|SRSF6_BOVIN | Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2 SV=1 | 14 | 210 | 8.0E-11 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 108 | 208 | 9.0E-11 |
| sp|Q9H361|PABP3_HUMAN | Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2 | 15 | 202 | 1.0E-10 |
| sp|Q9P3U1|YKX5_SCHPO | Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=3 SV=3 | 127 | 381 | 2.0E-10 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 14 | 91 | 2.0E-10 |
| sp|O13845|RSD1_SCHPO | RNA-binding protein rsd1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rsd1 PE=1 SV=2 | 10 | 218 | 2.0E-10 |
| sp|Q4VXU2|PAP1L_HUMAN | Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1 | 15 | 200 | 3.0E-10 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 14 | 91 | 4.0E-10 |
| sp|Q9FGS0|CP31B_ARATH | RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana GN=CP31B PE=1 SV=1 | 11 | 202 | 4.0E-10 |
| sp|P26686|SRR55_DROME | Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1 SV=4 | 14 | 205 | 6.0E-10 |
| sp|P19683|ROC4_NICSY | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 14 | 206 | 7.0E-10 |
| sp|P32588|PUB1_YEAST | Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUB1 PE=1 SV=4 | 6 | 358 | 9.0E-10 |
| sp|O04319|PABP6_ARATH | Polyadenylate-binding protein 6 OS=Arabidopsis thaliana GN=PAB6 PE=2 SV=1 | 129 | 358 | 1.0E-09 |
| sp|Q5R8F7|PABP1_PONAB | Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1 | 15 | 202 | 1.0E-09 |
| sp|P11940|PABP1_HUMAN | Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2 | 15 | 202 | 1.0E-09 |
| sp|P61286|PABP1_BOVIN | Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1 | 15 | 202 | 1.0E-09 |
| sp|Q09167|SRSF5_RAT | Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus GN=Srsf5 PE=1 SV=1 | 14 | 204 | 2.0E-09 |
| sp|O35326|SRSF5_MOUSE | Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5 PE=1 SV=2 | 14 | 204 | 2.0E-09 |
| sp|Q13243|SRSF5_HUMAN | Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5 PE=1 SV=1 | 14 | 204 | 2.0E-09 |
| sp|Q9P2K5|MYEF2_HUMAN | Myelin expression factor 2 OS=Homo sapiens GN=MYEF2 PE=1 SV=3 | 290 | 362 | 3.0E-09 |
| sp|P78814|SRP2_SCHPO | Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 | 14 | 91 | 3.0E-09 |
| sp|P29341|PABP1_MOUSE | Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2 | 15 | 202 | 5.0E-09 |
| sp|Q58EA2|THO4A_XENLA | THO complex subunit 4-A OS=Xenopus laevis GN=alyref-a PE=2 SV=1 | 280 | 381 | 5.0E-09 |
| sp|Q9EPH8|PABP1_RAT | Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=1 SV=1 | 15 | 202 | 5.0E-09 |
| sp|P20965|PABPA_XENLA | Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a PE=1 SV=3 | 15 | 202 | 5.0E-09 |
| sp|Q4VXU2|PAP1L_HUMAN | Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1 | 15 | 192 | 7.0E-09 |
| sp|Q28FB9|THOC4_XENTR | THO complex subunit 4 OS=Xenopus tropicalis GN=alyref PE=2 SV=1 | 282 | 381 | 7.0E-09 |
| sp|P20397|NUCL_XENLA | Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3 | 15 | 200 | 7.0E-09 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 12 | 202 | 9.0E-09 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 15 | 94 | 1.0E-08 |
| sp|Q7JGR2|PABP5_MACMU | Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1 | 7 | 192 | 1.0E-08 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 12 | 204 | 1.0E-08 |
| sp|B5FXN8|THOC4_TAEGU | THO complex subunit 4 OS=Taeniopygia guttata GN=ALYREF PE=2 SV=1 | 280 | 385 | 1.0E-08 |
| sp|P60050|PABP5_PONPY | Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1 | 7 | 192 | 1.0E-08 |
| sp|P60049|PABP5_PANTR | Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1 | 7 | 192 | 1.0E-08 |
| sp|P60048|PABP5_HYLLA | Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1 | 7 | 192 | 1.0E-08 |
| sp|Q96DU9|PABP5_HUMAN | Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1 | 7 | 192 | 1.0E-08 |
| sp|P60047|PABP5_GORGO | Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1 | 7 | 192 | 1.0E-08 |
| sp|Q86U06|RBM23_HUMAN | Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1 | 2 | 202 | 2.0E-08 |
| sp|O04319|PABP6_ARATH | Polyadenylate-binding protein 6 OS=Arabidopsis thaliana GN=PAB6 PE=2 SV=1 | 9 | 207 | 3.0E-08 |
| sp|P20397|NUCL_XENLA | Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3 | 13 | 202 | 3.0E-08 |
| sp|Q1PEP5|NUCL2_ARATH | Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1 | 15 | 166 | 3.0E-08 |
| sp|Q9JJW6|ALRF2_MOUSE | Aly/REF export factor 2 OS=Mus musculus GN=Alyref2 PE=1 SV=1 | 244 | 383 | 3.0E-08 |
| sp|Q8L773|THO4A_ARATH | THO complex subunit 4A OS=Arabidopsis thaliana GN=ALY1 PE=1 SV=1 | 280 | 363 | 3.0E-08 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 15 | 94 | 4.0E-08 |
| sp|Q62826|HNRPM_RAT | Heterogeneous nuclear ribonucleoprotein M OS=Rattus norvegicus GN=Hnrnpm PE=1 SV=4 | 279 | 362 | 4.0E-08 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 15 | 94 | 4.0E-08 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 12 | 202 | 4.0E-08 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 6 | 202 | 4.0E-08 |
| sp|Q9D0E1|HNRPM_MOUSE | Heterogeneous nuclear ribonucleoprotein M OS=Mus musculus GN=Hnrnpm PE=1 SV=3 | 279 | 362 | 5.0E-08 |
| sp|P52272|HNRPM_HUMAN | Heterogeneous nuclear ribonucleoprotein M OS=Homo sapiens GN=HNRNPM PE=1 SV=3 | 279 | 362 | 5.0E-08 |
| sp|Q9FXA2|PABP8_ARATH | Polyadenylate-binding protein 8 OS=Arabidopsis thaliana GN=PAB8 PE=1 SV=1 | 1 | 198 | 6.0E-08 |
| sp|P0CP46|PABP_CRYNJ | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1 | 2 | 192 | 6.0E-08 |
| sp|P0CP47|PABP_CRYNB | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAB1 PE=3 SV=1 | 2 | 192 | 6.0E-08 |
| sp|Q6IP09|PABPB_XENLA | Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b PE=2 SV=1 | 15 | 202 | 7.0E-08 |
| sp|Q6GR16|EPABB_XENLA | Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-b PE=2 SV=1 | 15 | 232 | 7.0E-08 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 290 | 361 | 8.0E-08 |
| sp|Q86V81|THOC4_HUMAN | THO complex subunit 4 OS=Homo sapiens GN=ALYREF PE=1 SV=3 | 290 | 385 | 8.0E-08 |
| sp|P09405|NUCL_MOUSE | Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2 | 13 | 200 | 9.0E-08 |
| sp|Q98SP8|EPABA_XENLA | Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-a PE=1 SV=2 | 15 | 232 | 9.0E-08 |
| sp|Q8C854|MYEF2_MOUSE | Myelin expression factor 2 OS=Mus musculus GN=Myef2 PE=1 SV=1 | 290 | 362 | 1.0E-07 |
| sp|Q6GLW1|THO4B_XENLA | THO complex subunit 4-B OS=Xenopus laevis GN=alyref-b PE=2 SV=1 | 282 | 381 | 1.0E-07 |
| sp|Q4P8R9|PABP_USTMA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1 | 4 | 202 | 1.0E-07 |
| sp|O08583|THOC4_MOUSE | THO complex subunit 4 OS=Mus musculus GN=Alyref PE=1 SV=3 | 290 | 383 | 1.0E-07 |
| sp|Q3T0I4|THOC4_BOVIN | THO complex subunit 4 OS=Bos taurus GN=ALYREF PE=2 SV=1 | 290 | 385 | 1.0E-07 |
| sp|P42731|PABP2_ARATH | Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1 | 4 | 135 | 2.0E-07 |
| sp|P78814|SRP2_SCHPO | Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp2 PE=1 SV=2 | 14 | 213 | 2.0E-07 |
| sp|Q6DEY7|EPAB_XENTR | Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1 | 15 | 232 | 2.0E-07 |
| sp|Q23120|RSP2_CAEEL | Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis elegans GN=rsp-2 PE=3 SV=1 | 14 | 202 | 2.0E-07 |
| sp|Q9ZUU4|CP29B_ARATH | RNA-binding protein CP29B, chloroplastic OS=Arabidopsis thaliana GN=CP29B PE=1 SV=1 | 290 | 361 | 4.0E-07 |
| sp|Q9FMP4|SF3B6_ARATH | Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1 | 127 | 202 | 4.0E-07 |
| sp|P82277|RRP2_SPIOL | 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1 | 13 | 202 | 5.0E-07 |
| sp|P25555|GBP2_YEAST | Single-strand telomeric DNA-binding protein GBP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GBP2 PE=1 SV=1 | 289 | 358 | 7.0E-07 |
| sp|P19338|NUCL_HUMAN | Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3 | 13 | 202 | 8.0E-07 |
| sp|Q5RF26|NUCL_PONAB | Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3 | 13 | 202 | 8.0E-07 |
| sp|Q6NQ72|THO4D_ARATH | THO complex subunit 4D OS=Arabidopsis thaliana GN=ALY4 PE=1 SV=1 | 282 | 380 | 8.0E-07 |
| sp|Q4R4J7|NUCL_MACFA | Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3 | 13 | 202 | 8.0E-07 |
| sp|Q9FVQ1|NUCL1_ARATH | Nucleolin 1 OS=Arabidopsis thaliana GN=NUCL1 PE=1 SV=1 | 13 | 197 | 9.0E-07 |
| sp|Q7XTT4|NUCL2_ORYSJ | Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2 SV=2 | 13 | 90 | 1.0E-06 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 285 | 363 | 1.0E-06 |
| sp|Q23121|RSP1_CAEEL | Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1 | 14 | 205 | 1.0E-06 |
| sp|O64380|PABP3_ARATH | Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1 | 285 | 364 | 1.0E-06 |
| sp|P49313|ROC1_NICPL | 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1 | 290 | 361 | 2.0E-06 |
| sp|Q4P8R9|PABP_USTMA | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1 | 290 | 364 | 2.0E-06 |
| sp|Q8L719|THO4B_ARATH | THO complex subunit 4B OS=Arabidopsis thaliana GN=ALY2 PE=1 SV=1 | 126 | 202 | 2.0E-06 |
| sp|F4HT49|PABP1_ARATH | Polyadenylate-binding protein 1 OS=Arabidopsis thaliana GN=PAB1 PE=2 SV=2 | 290 | 368 | 2.0E-06 |
| sp|A5DW14|PABP_LODEL | Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3 SV=1 | 12 | 202 | 2.0E-06 |
| sp|O22173|PABP4_ARATH | Polyadenylate-binding protein 4 OS=Arabidopsis thaliana GN=PAB4 PE=1 SV=1 | 290 | 364 | 2.0E-06 |
| sp|O22315|SR34_ARATH | Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1 | 125 | 202 | 2.0E-06 |
| sp|Q94EH8|THO4C_ARATH | THO complex subunit 4C OS=Arabidopsis thaliana GN=ALY3 PE=1 SV=1 | 281 | 363 | 2.0E-06 |
| sp|Q5RC80|RBM39_PONAB | RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1 | 2 | 213 | 2.0E-06 |
| sp|Q14498|RBM39_HUMAN | RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2 | 2 | 213 | 3.0E-06 |
| sp|Q8VH51|RBM39_MOUSE | RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2 | 2 | 213 | 3.0E-06 |
| sp|Q54BM2|PAP1A_DICDI | Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1 | 15 | 192 | 3.0E-06 |
| sp|O80678|UBA2B_ARATH | UBP1-associated protein 2B OS=Arabidopsis thaliana GN=UBA2B PE=2 SV=1 | 1 | 204 | 3.0E-06 |
| sp|P27476|NSR1_YEAST | Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1 SV=1 | 285 | 372 | 3.0E-06 |
| sp|P19684|ROC5_NICSY | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 290 | 374 | 3.0E-06 |
| sp|P19684|ROC5_NICSY | 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1 | 14 | 202 | 4.0E-06 |
| sp|Q9ZQA8|PABP7_ARATH | Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1 | 290 | 364 | 4.0E-06 |
| sp|Q61545|EWS_MOUSE | RNA-binding protein EWS OS=Mus musculus GN=Ewsr1 PE=1 SV=2 | 129 | 202 | 4.0E-06 |
| sp|P15771|NUCL_CHICK | Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1 | 13 | 202 | 5.0E-06 |
| sp|O74400|YOCE_SCHPO | Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC4F6.14 PE=1 SV=1 | 289 | 362 | 5.0E-06 |
| sp|F4JHI7|SR34B_ARATH | Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1 | 125 | 202 | 6.0E-06 |
| sp|Q39061|CP33_ARATH | RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana GN=CP33 PE=2 SV=1 | 290 | 376 | 7.0E-06 |
| sp|Q08935|ROC1_NICSY | 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1 | 290 | 361 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm|Nucleus | Nuclear localization signal|Nuclear export signal | 0.5632 | 0.6597 | 0.0182 | 0.0876 | 0.1149 | 0.0019 | 0.0979 | 0.0085 | 0.035 | 0.0004 |
| Orthofinder run ID | 4 |
| Orthogroup | 5086 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2993 MMNNIRETSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLFADVLLLPNGMSKGCGIVEYATREQAQQAVAQLSN QNLMGRLVYVREDREAEPRFIGATAGNRGAFVGAMPGGFNPGFSGAPGGGGRQIYVTNLPFNVGWQDLKDLFRQA TRVGGVIRADVHVGPDGRPKGSGIVVFESPDDARNAIQQFNGYDWQGRMLEVREDRFAASGTLGFMGRGGYSGGI RGGFGGGGGFGRGAFGGGRGGFPFGGRGSFAGGSTGGYDTSAAVPVPPNPFTDNATAGAERSQTIYVRNLPWSTS NDDLVELFTTIGKVEQAEIQYEPSGRSRGSGVVRFDTPETAETAIAKFQGYQYGGRPLNLSFVKYLNQGGNENME TDTHGGLTQDQIM* |
| Coding | >Hirsu2|2993 ATGATGAACAACATTCGCGAGACATCACAGCAGGACCGTCGCGTCTACGTCGGCAATCTTTCCTACGATGTCAAG TGGCACCATCTTAAGGACTTCATGAGACAAGCTGGCGAGGTCCTCTTTGCTGATGTTTTACTACTTCCCAACGGA ATGTCGAAGGGATGCGGGATCGTCGAATACGCCACCCGAGAGCAAGCTCAGCAGGCGGTTGCCCAACTTAGCAAC CAGAACCTTATGGGCCGTTTGGTTTACGTTCGAGAAGATCGTGAGGCCGAGCCTCGATTCATCGGTGCCACTGCT GGTAACAGAGGCGCTTTTGTCGGTGCCATGCCAGGTGGCTTTAACCCTGGCTTTAGTGGTGCACCTGGAGGGGGC GGCCGTCAGATCTACGTCACAAATTTGCCGTTCAACGTTGGCTGGCAAGACTTGAAAGATCTTTTCCGACAGGCC ACTCGCGTCGGAGGTGTCATTCGTGCCGACGTCCACGTAGGTCCTGATGGGCGGCCGAAGGGCTCCGGCATAGTT GTTTTCGAGAGTCCCGACGACGCTCGAAACGCCATTCAGCAGTTCAACGGCTACGACTGGCAAGGGCGCATGCTC GAGGTGCGAGAGGATCGATTCGCAGCTTCTGGCACCTTGGGCTTCATGGGCCGCGGCGGTTACAGCGGCGGGATA CGTGGGGGATTCGGTGGAGGTGGCGGCTTCGGCCGTGGCGCCTTCGGCGGTGGACGGGGAGGCTTTCCGTTTGGT GGCCGGGGAAGCTTTGCCGGCGGCTCCACCGGCGGCTACGATACCTCGGCCGCCGTCCCGGTTCCGCCAAACCCT TTCACCGACAACGCTACAGCCGGCGCGGAGAGGAGCCAGACGATCTACGTCCGCAATCTCCCATGGTCAACCAGT AACGACGACTTGGTCGAGCTCTTCACAACCATCGGCAAGGTCGAGCAAGCCGAGATTCAATACGAGCCCAGCGGC CGGTCGCGAGGCTCCGGCGTAGTTCGCTTCGATACTCCCGAAACTGCTGAAACTGCAATCGCCAAGTTTCAGGGA TATCAATATGGCGGCCGCCCTTTGAACCTGAGTTTCGTCAAATACCTGAATCAGGGCGGAAATGAAAATATGGAA ACGGATACGCATGGAGGTTTGACGCAGGACCAGATCATGTGA |
| Transcript | >Hirsu2|2993 ATGATGAACAACATTCGCGAGACATCACAGCAGGACCGTCGCGTCTACGTCGGCAATCTTTCCTACGATGTCAAG TGGCACCATCTTAAGGACTTCATGAGACAAGCTGGCGAGGTCCTCTTTGCTGATGTTTTACTACTTCCCAACGGA ATGTCGAAGGGATGCGGGATCGTCGAATACGCCACCCGAGAGCAAGCTCAGCAGGCGGTTGCCCAACTTAGCAAC CAGAACCTTATGGGCCGTTTGGTTTACGTTCGAGAAGATCGTGAGGCCGAGCCTCGATTCATCGGTGCCACTGCT GGTAACAGAGGCGCTTTTGTCGGTGCCATGCCAGGTGGCTTTAACCCTGGCTTTAGTGGTGCACCTGGAGGGGGC GGCCGTCAGATCTACGTCACAAATTTGCCGTTCAACGTTGGCTGGCAAGACTTGAAAGATCTTTTCCGACAGGCC ACTCGCGTCGGAGGTGTCATTCGTGCCGACGTCCACGTAGGTCCTGATGGGCGGCCGAAGGGCTCCGGCATAGTT GTTTTCGAGAGTCCCGACGACGCTCGAAACGCCATTCAGCAGTTCAACGGCTACGACTGGCAAGGGCGCATGCTC GAGGTGCGAGAGGATCGATTCGCAGCTTCTGGCACCTTGGGCTTCATGGGCCGCGGCGGTTACAGCGGCGGGATA CGTGGGGGATTCGGTGGAGGTGGCGGCTTCGGCCGTGGCGCCTTCGGCGGTGGACGGGGAGGCTTTCCGTTTGGT GGCCGGGGAAGCTTTGCCGGCGGCTCCACCGGCGGCTACGATACCTCGGCCGCCGTCCCGGTTCCGCCAAACCCT TTCACCGACAACGCTACAGCCGGCGCGGAGAGGAGCCAGACGATCTACGTCCGCAATCTCCCATGGTCAACCAGT AACGACGACTTGGTCGAGCTCTTCACAACCATCGGCAAGGTCGAGCAAGCCGAGATTCAATACGAGCCCAGCGGC CGGTCGCGAGGCTCCGGCGTAGTTCGCTTCGATACTCCCGAAACTGCTGAAACTGCAATCGCCAAGTTTCAGGGA TATCAATATGGCGGCCGCCCTTTGAACCTGAGTTTCGTCAAATACCTGAATCAGGGCGGAAATGAAAATATGGAA ACGGATACGCATGGAGGTTTGACGCAGGACCAGATCATGTGA |
| Gene | >Hirsu2|2993 ATGATGAACAACATTCGCGAGACATCACAGCAGGACCGTCGCGTCTACGTCGGCAATCTTTCCTACGATGTCAAG TGGCACCATCTTAAGGACTTCATGAGACAAGGTAACGTTGGTAACAGTAAACTACGAGGCTCGCTATGGCTTACC TTCATTGTCGCAGCTGGCGAGGTCCTCTTTGCTGATGTTTTACTACTTCCCAACGGAATGTCGAAGGTGTGCCCT CTGCAACCACGTCCCGTAACTGCATTTCACCCTCCATCCTCATTCCTTACCTCTCAACTACACGGACTTTCTGCC TTTCGGCTGCTCTTGTCGTCAACTCCCCCGAACGATCACGGCACCTGCATATGTCCCATCCACTCGCTAACCCCA TGGGCCCTTGTTTCCCAATTCTTACAGGGATGCGGGTAAGTCTCGTCCTGCTCAACCATGAGCATCCAGCTGACC CGCCGCACGAGGATCGTCGAATACGCCACCCGAGAGCAAGCTCAGCAGGCGGTTGCCCAACTTAGCAACCAGAAC CTTATGGGCCGTTTGGTTTACGTTCGAGAAGTCAGTCCAGCCTTTCGCGCAAAACCATCCGCGCTAATACGACGA CAGGATCGTGAGGCCGAGCCTCGATTCATCGGTGCCACTGCTGGTAACAGAGGCGCTTTTGTCGGTGCCATGCCA GGTGGCTTTAACCCTGGCTTTAGTGGTGCACCTGGAGGGGGCGGCCGTCAGATCTACGTCACAAATGTAAGCTTC AGCCGTCCTCCGACTACGCCATCTCGTGCTCACACTTCGCGACTGTAGTTGCCGTTCAACGTTGGCTGGCAAGAC TTGAAAGATCTTTTCCGACAGGCCAGTAAGTGGCCCTGATCCATTCACAAAAAGCCCTGCGCGTCTAATCCCAAT GCAGCTCGCGTCGGAGGTGTCATTCGTGCCGACGTCCACGTAGGTCCTGATGGGCGGCCGAAGGGCTCCGGCATA GTTGTTTTCGAGAGTCCCGACGACGCTCGAAACGCCATTCAGCAGTTCAACGGCTACGACTGGCAAGGGCGCATG CTCGAGGTGCGAGAGGATCGATTCGCAGCTTCTGGCACCTTGGGCTTCATGGGCCGCGGCGGTTACAGCGGCGGG ATACGTGGGGGATTCGGTGGAGGTGGCGGCTTCGGCCGTGGCGCCTTCGGCGGTGGACGGGGAGGCTTTCCGTTT GGTGGCCGGGGAAGCTTTGCCGGCGGCTCCACCGGCGGCTACGATACCTCGGCCGCCGTCCCGGTTCCGCCAAAC CCTTTCACCGACAACGCTACAGCCGGCGCGGAGAGGAGCCAGACGATCTACGTCCGCAATGTAAGTTGCACAGCG CTCCGTCACACTCATTCGCCAGGTCAGAAGTTGACGGGATACATTCATACAAGCTCCCATGGTCAACCAGTAACG ACGACTTGGTCGAGCTCTTCACAACCATCGGCAAGGTCGAGCAAGCCGAGATTCAATACGAGCCCAGCGGCCGGT CGCGAGGCTCCGGCGTAGTTCGCTTCGATACTCCCGAAACTGCTGAAACTGCAATCGCCAAGTTTCAGGGATATC AATATGGCGGCCGCCCTTTGAACCTGAGTTTCGTCAAATACCTGAATCAGGGCGGAAATGAAAATATGGAAACGG ATACGCATGGAGGTTTGACGCAGGACCAGATCATGTGA |