© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2982 |
| Gene name | |
| Location | Contig_175:26338..27087 |
| Strand | - |
| Gene length (bp) | 749 |
| Transcript length (bp) | 648 |
| Coding sequence length (bp) | 648 |
| Protein length (aa) | 216 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01375 | Enterotoxin_a | Heat-labile enterotoxin alpha chain | 2.6E-08 | 42 | 198 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0090729 | toxin activity | Yes |
| GO:0005615 | extracellular space | Yes |
| GO:0005575 | cellular_component | No |
| GO:0003674 | molecular_function | No |
| GO:0110165 | cellular anatomical entity | No |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1628 | 0.071 | 0.9197 | 0.108 | 0.0489 | 0.0332 | 0.3805 | 0.3047 | 0.2391 | 0.0022 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 26 | 0.999702 |
| Orthofinder run ID | 4 |
| Orthogroup | 5083 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2982 MIFSLQSSFVFSAYALWLAFLSSGQAGPLTPRDPDSRGPAYVYRGDTRSPAVLRAKGGFHPFGRYEDDDNAFNIE NHLFVDLGFMNAVSENFDTCDGLSDEEKLSEATNLQQNWTTAFVSTTTSIRTASDYAHGRWVYLIHVTPNMIMLP ENLDDEIVALGGILWSQVRGYRWVGNEELAPPSGNPGEDDRFTRSPDYVAQRLDWTLPSAPTAGN* |
| Coding | >Hirsu2|2982 ATGATCTTCAGTTTACAGTCCAGCTTTGTCTTTTCGGCATACGCTCTATGGCTGGCTTTCCTGTCTTCTGGCCAA GCCGGCCCTCTGACTCCCCGCGACCCCGACTCCCGTGGGCCGGCGTACGTCTACCGCGGCGACACTCGATCGCCT GCCGTACTCCGCGCCAAGGGCGGCTTCCATCCCTTCGGCCGATATGAAGACGACGACAACGCATTCAACATCGAA AACCACTTGTTTGTCGATCTGGGCTTCATGAATGCAGTGTCCGAGAACTTCGATACCTGCGACGGCTTATCGGAT GAGGAGAAGTTGTCGGAAGCAACAAATCTGCAGCAAAACTGGACAACTGCTTTCGTGTCCACAACCACCTCGATA AGGACAGCATCCGATTACGCACACGGCCGATGGGTGTACCTTATCCACGTCACGCCCAACATGATCATGTTACCG GAGAACCTGGATGATGAGATTGTGGCTCTCGGCGGCATCCTCTGGTCGCAAGTACGGGGCTATCGCTGGGTCGGC AACGAGGAGTTGGCTCCGCCCAGCGGCAACCCGGGGGAGGACGACCGGTTCACGAGGAGCCCCGACTACGTCGCC CAAAGGCTGGACTGGACGCTTCCCTCTGCTCCCACCGCCGGAAACTAA |
| Transcript | >Hirsu2|2982 ATGATCTTCAGTTTACAGTCCAGCTTTGTCTTTTCGGCATACGCTCTATGGCTGGCTTTCCTGTCTTCTGGCCAA GCCGGCCCTCTGACTCCCCGCGACCCCGACTCCCGTGGGCCGGCGTACGTCTACCGCGGCGACACTCGATCGCCT GCCGTACTCCGCGCCAAGGGCGGCTTCCATCCCTTCGGCCGATATGAAGACGACGACAACGCATTCAACATCGAA AACCACTTGTTTGTCGATCTGGGCTTCATGAATGCAGTGTCCGAGAACTTCGATACCTGCGACGGCTTATCGGAT GAGGAGAAGTTGTCGGAAGCAACAAATCTGCAGCAAAACTGGACAACTGCTTTCGTGTCCACAACCACCTCGATA AGGACAGCATCCGATTACGCACACGGCCGATGGGTGTACCTTATCCACGTCACGCCCAACATGATCATGTTACCG GAGAACCTGGATGATGAGATTGTGGCTCTCGGCGGCATCCTCTGGTCGCAAGTACGGGGCTATCGCTGGGTCGGC AACGAGGAGTTGGCTCCGCCCAGCGGCAACCCGGGGGAGGACGACCGGTTCACGAGGAGCCCCGACTACGTCGCC CAAAGGCTGGACTGGACGCTTCCCTCTGCTCCCACCGCCGGAAACTAA |
| Gene | >Hirsu2|2982 ATGATCTTCAGTTTACAGTCCAGCTTTGTCTTTTCGGCATACGCTCTATGGCTGGCTTTCCTGTCTTCTGGCCAA GCCGGCCCTCTGACTCCCCGCGACCCCGACTCCCGTGGGCCGGCGTACGTCTACCGCGGCGACACTCGATCGCCT GCCGTACTCCGCGCCAAGGGCGGCTTCCATCCCTTCGGCCGATATGAAGACGACGACAACGCATTCAACATCGAA AACCACTTGTTTGTCGATCTGGGCTTCATGAATGCAGTGTCCGAGAACTTCGATACCTGCGACGGCTTATCGGAT GAGGAGAAGTTGTCGGAAGCAACAAATCTGCAGCAAAACTGGACAACTGCTTTCGTGTCCACAACCACCTCGATA AGGACAGCATCCGATTACGCACACGGCCGATGGGTGTACCTTATCCACGTCACGCCCAACATGATCATGTTACCG GAGAACCTGGATGATGAGATTGTGGCTCTCGGCGGCATCCTCTGGTCGCAAGTACGGGGCTATCGCTGGGTCGGC AACGAGGAGTTGGCTCCGCCCAGCGGCAACCCGGGGGAGGACGACCGGTTCACGAGGAGCCCCGACTACGTCGCC CAAAGGTGGGAGAACGTGAATGCAACTCAGTTTCCAGATTACTGGACCCCTGAGAGGGCAAGGCAGTCCGCTCAG AGGCTGATGAACGAGGTCGGGGCGGTCGTAGGCTGGACTGGACGCTTCCCTCTGCTCCCACCGCCGGAAACTAA |