Fungal Genomics

at Utrecht University

General Properties

Protein IDHirsu2|2971
Gene name
LocationContig_1748:3661..4982
Strand-
Gene length (bp)1321
Transcript length (bp)1086
Coding sequence length (bp)1086
Protein length (aa) 362

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00498 FHA FHA domain 1.0E-14 25 93
PF17123 zf-RING_11 RING-like zinc finger 3.1E-13 149 177
PF13639 zf-RING_2 Ring finger domain 6.9E-07 149 195

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|A6ZRW7|DMA2_YEAS7 E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DMA2 PE=3 SV=1 4 202 4.0E-67
sp|P53924|DMA2_YEAST E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA2 PE=1 SV=1 4 202 5.0E-67
sp|P38823|DMA1_YEAST E3 ubiquitin-protein ligase DMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA1 PE=1 SV=1 4 204 3.0E-66
sp|Q10322|DMA1_SCHPO Probable E3 ubiquitin-protein ligase dma1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dma1 PE=1 SV=1 8 214 5.0E-61
sp|O74388|YNVD_SCHPO Uncharacterized protein C3H7.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.13 PE=1 SV=1 5 157 4.0E-15
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Swissprot ID Swissprot Description Start End E-value
sp|A6ZRW7|DMA2_YEAS7 E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DMA2 PE=3 SV=1 4 202 4.0E-67
sp|P53924|DMA2_YEAST E3 ubiquitin-protein ligase DMA2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA2 PE=1 SV=1 4 202 5.0E-67
sp|P38823|DMA1_YEAST E3 ubiquitin-protein ligase DMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DMA1 PE=1 SV=1 4 204 3.0E-66
sp|Q10322|DMA1_SCHPO Probable E3 ubiquitin-protein ligase dma1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dma1 PE=1 SV=1 8 214 5.0E-61
sp|O74388|YNVD_SCHPO Uncharacterized protein C3H7.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC3H7.13 PE=1 SV=1 5 157 4.0E-15
sp|Q28623|SLMAP_RABIT Sarcolemmal membrane-associated protein OS=Oryctolagus cuniculus GN=SLMAP PE=1 SV=2 8 95 2.0E-09
sp|Q14BN4|SLMAP_HUMAN Sarcolemmal membrane-associated protein OS=Homo sapiens GN=SLMAP PE=1 SV=1 8 95 2.0E-09
sp|P0C219|SLMAP_RAT Sarcolemmal membrane-associated protein OS=Rattus norvegicus GN=Slmap PE=1 SV=1 8 95 1.0E-08
sp|Q3URD3|SLMAP_MOUSE Sarcolemmal membrane-associated protein OS=Mus musculus GN=Slmap PE=1 SV=2 8 95 1.0E-08
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GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0003674 molecular_function No
GO:0005488 binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 40 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

No expression data available for this genome

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Hirsu2|2971
LPTGSEVIRVGRYSERDGQAATMSGSQPSAAPVGFKSKVVSRRHCEFWCEDGKWYIKDVKSSSGTFLNHIRLSPP
SQESKAYPVNDGDIVQLGIDFKGGEEMIFRCVKMRLELNRGWQNKLNTFNVAAHKRLRTMASNGAAASPASSQDC
SICLNSIAPCQSLFVAPCSHTWHFKCVRSLLMSPQYPIFVCPNCRAGADLEADVEEPSEEWQQLEDCDEEACEQA
CEAAQDKAPARSPSPASVPEPADVTVQDADAMDVTVNVGAPAAPASRSTPPHASTEPLPINSPASGAGRVGHLRE
NGSPSPGPNGEGPITPRNNAGPWVFDGSAGRRAADATLEMRSLDAAADMDARAGGQSDDSS*
Coding >Hirsu2|2971
CTGCCCACCGGCTCCGAGGTGATCCGCGTCGGCCGCTACTCGGAGCGCGACGGCCAGGCCGCCACCATGTCGGGC
AGCCAGCCGTCGGCCGCCCCCGTCGGCTTCAAGAGCAAGGTCGTCAGCCGGAGACACTGCGAGTTCTGGTGCGAG
GACGGCAAGTGGTACATCAAGGACGTTAAGAGCTCTTCCGGCACCTTTCTCAACCACATCCGCCTCAGCCCCCCC
TCCCAGGAGAGCAAGGCCTACCCCGTCAACGACGGCGACATCGTCCAGCTCGGCATCGACTTCAAGGGGGGCGAG
GAGATGATCTTTCGATGCGTCAAGATGCGCCTCGAGCTCAACCGGGGATGGCAAAACAAGCTCAACACCTTCAAC
GTCGCCGCCCACAAGCGCCTGCGCACCATGGCCTCGAACGGCGCCGCCGCGTCCCCCGCTAGCTCCCAGGACTGC
TCCATCTGCCTCAACTCCATTGCGCCGTGCCAGTCTCTCTTCGTGGCCCCGTGCTCGCACACGTGGCATTTCAAG
TGCGTCCGCTCGCTGCTGATGTCGCCGCAATATCCCATCTTCGTCTGCCCCAACTGCCGCGCCGGCGCCGACCTC
GAGGCCGACGTGGAGGAGCCGTCGGAGGAGTGGCAGCAGCTGGAGGACTGCGACGAGGAGGCGTGCGAGCAGGCG
TGCGAGGCGGCGCAGGACAAGGCGCCCGCGCGGAGCCCGTCGCCGGCGTCGGTGCCGGAGCCGGCAGACGTGACG
GTGCAGGACGCCGACGCCATGGACGTGACGGTCAACGTCGGAGCGCCGGCCGCTCCGGCGTCGCGATCGACGCCG
CCACACGCTTCGACGGAGCCCCTACCCATCAACAGCCCCGCCTCGGGTGCCGGCCGGGTCGGCCACCTGAGGGAG
AACGGGTCCCCGTCGCCGGGCCCCAACGGCGAGGGCCCCATCACGCCGCGTAACAACGCGGGCCCCTGGGTCTTT
GACGGGAGCGCGGGTCGCCGAGCCGCCGACGCGACGCTGGAGATGCGAAGTCTCGATGCGGCGGCTGACATGGAC
GCGCGCGCGGGGGGGCAGAGTGACGACTCGAGCTGA
Transcript >Hirsu2|2971
CTGCCCACCGGCTCCGAGGTGATCCGCGTCGGCCGCTACTCGGAGCGCGACGGCCAGGCCGCCACCATGTCGGGC
AGCCAGCCGTCGGCCGCCCCCGTCGGCTTCAAGAGCAAGGTCGTCAGCCGGAGACACTGCGAGTTCTGGTGCGAG
GACGGCAAGTGGTACATCAAGGACGTTAAGAGCTCTTCCGGCACCTTTCTCAACCACATCCGCCTCAGCCCCCCC
TCCCAGGAGAGCAAGGCCTACCCCGTCAACGACGGCGACATCGTCCAGCTCGGCATCGACTTCAAGGGGGGCGAG
GAGATGATCTTTCGATGCGTCAAGATGCGCCTCGAGCTCAACCGGGGATGGCAAAACAAGCTCAACACCTTCAAC
GTCGCCGCCCACAAGCGCCTGCGCACCATGGCCTCGAACGGCGCCGCCGCGTCCCCCGCTAGCTCCCAGGACTGC
TCCATCTGCCTCAACTCCATTGCGCCGTGCCAGTCTCTCTTCGTGGCCCCGTGCTCGCACACGTGGCATTTCAAG
TGCGTCCGCTCGCTGCTGATGTCGCCGCAATATCCCATCTTCGTCTGCCCCAACTGCCGCGCCGGCGCCGACCTC
GAGGCCGACGTGGAGGAGCCGTCGGAGGAGTGGCAGCAGCTGGAGGACTGCGACGAGGAGGCGTGCGAGCAGGCG
TGCGAGGCGGCGCAGGACAAGGCGCCCGCGCGGAGCCCGTCGCCGGCGTCGGTGCCGGAGCCGGCAGACGTGACG
GTGCAGGACGCCGACGCCATGGACGTGACGGTCAACGTCGGAGCGCCGGCCGCTCCGGCGTCGCGATCGACGCCG
CCACACGCTTCGACGGAGCCCCTACCCATCAACAGCCCCGCCTCGGGTGCCGGCCGGGTCGGCCACCTGAGGGAG
AACGGGTCCCCGTCGCCGGGCCCCAACGGCGAGGGCCCCATCACGCCGCGTAACAACGCGGGCCCCTGGGTCTTT
GACGGGAGCGCGGGTCGCCGAGCCGCCGACGCGACGCTGGAGATGCGAAGTCTCGATGCGGCGGCTGACATGGAC
GCGCGCGCGGGGGGGCAGAGTGACGACTCGAGCTGA
Gene >Hirsu2|2971
CTGCCCACCGGCTCCGAGGTGATCCGCGTCGGCCGCTACTCGGAGCGCGACGGCCAGGCCGCCACCATGTCGGGC
AGCCAGCCGTCGGCCGCCCCCGTCGGCTTCAAGAGCAAGGTCGTCAGCCGGAGACACTGCGAGTTCTGGTGCGAG
GACGGCAAGTGGTACATCAAGGACGTTAAGAGCTCTTCCGGCACCTTTCTCAACCACATCCGCCTCAGCCCCCCC
TCCCAGGAGAGCAAGGCCTACCCCGTCAACGACGGCGACATCGTCCAGCTCGGCATCGACTTCAAGGGGGGCGAG
GAGATGATCTTTCGATGCGTCAAGATGCGCCTCGAGCTCAACCGGGGATGGCAAAACAAGCTCAACACCTTCAAG
TGAGTCGCCTCGCCTCGCCTCGCCTCGCCTTCCCCCCGCCGCTCCCGGCCACCACGCCCGCCACTCCTCCCCCCC
CTGCCGCCCTCGCGCGTCCTTCCGGGCTAACCTCGTGTGCCTCCCCACCTCTAGCGTCGCCGCCCACAAGCGCCT
GCGCACCATGGCCTCGAACGGCGCCGCCGCGTCCCCCGCTAGCTCCCAGGACTGCTCCATCTGCCTCAACTCCAT
TGCGGTACGTTCTCCTCCCCCTGCCCGCCGAAGCTTGACTTCACCCGGGGGCGGTCGACCCGAGGCCGCCGAGGC
GGACCGTTGAAGCTGACCTCGCTCGCCGCTTCAGCCGTGCCAGTCTCTCTTCGTGGCCCCGTGCTCGCACACGTG
GCATTTCAAGTGCGTCCGCTCGCTGCTGATGTCGCCGCAATATCCCATCTTCGTCTGCCCCAACTGCCGCGCCGG
CGCCGACCTCGAGGCCGACGTGGAGGAGCCGTCGGAGGAGTGGCAGCAGCTGGAGGACTGCGACGAGGAGGCGTG
CGAGCAGGCGTGCGAGGCGGCGCAGGACAAGGCGCCCGCGCGGAGCCCGTCGCCGGCGTCGGTGCCGGAGCCGGC
AGACGTGACGGTGCAGGACGCCGACGCCATGGACGTGACGGTCAACGTCGGAGCGCCGGCCGCTCCGGCGTCGCG
ATCGACGCCGCCACACGCTTCGACGGAGCCCCTACCCATCAACAGCCCCGCCTCGGGTGCCGGCCGGGTCGGCCA
CCTGAGGGAGAACGGGTCCCCGTCGCCGGGCCCCAACGGCGAGGGCCCCATCACGCCGCGTAACAACGCGGGCCC
CTGGGTCTTTGACGGGAGCGCGGGTCGCCGAGCCGCCGACGCGACGCTGGAGATGCGAAGTCTCGATGCGGCGGC
TGACATGGACGCGCGCGCGGGGGGGCAGAGTGACGACTCGAGCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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