© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2923 |
| Gene name | |
| Location | Contig_173:9227..10201 |
| Strand | + |
| Gene length (bp) | 974 |
| Transcript length (bp) | 897 |
| Coding sequence length (bp) | 897 |
| Protein length (aa) | 299 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | 4.9E-10 | 215 | 262 |
| PF13923 | zf-C3HC4_2 | Zinc finger, C3HC4 type (RING finger) | 2.7E-07 | 216 | 257 |
| PF13639 | zf-RING_2 | Ring finger domain | 1.2E-06 | 216 | 258 |
| PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.6E-06 | 217 | 257 |
| PF14447 | Prok-RING_4 | Prokaryotic RING finger family 4 | 2.3E-06 | 217 | 264 |
| PF13445 | zf-RING_UBOX | RING-type zinc-finger | 2.2E-05 | 217 | 255 |
| PF12861 | zf-ANAPC11 | Anaphase-promoting complex subunit 11 RING-H2 finger | 7.1E-05 | 216 | 264 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6PCN7|HLTF_MOUSE | Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | 198 | 261 | 2.0E-09 |
| sp|Q14527|HLTF_HUMAN | Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | 194 | 261 | 7.0E-09 |
| sp|Q99942|RNF5_HUMAN | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 | 199 | 261 | 1.0E-08 |
| sp|Q5M807|RNF5_RAT | E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 | 199 | 261 | 1.0E-08 |
| sp|O35445|RNF5_MOUSE | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 | 199 | 261 | 1.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q6PCN7|HLTF_MOUSE | Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1 SV=1 | 198 | 261 | 2.0E-09 |
| sp|Q14527|HLTF_HUMAN | Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1 SV=2 | 194 | 261 | 7.0E-09 |
| sp|Q99942|RNF5_HUMAN | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1 | 199 | 261 | 1.0E-08 |
| sp|Q5M807|RNF5_RAT | E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1 | 199 | 261 | 1.0E-08 |
| sp|O35445|RNF5_MOUSE | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1 | 199 | 261 | 1.0E-08 |
| sp|Q91YT2|RN185_MOUSE | E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1 | 213 | 261 | 4.0E-08 |
| sp|Q5ZIR9|RN185_CHICK | E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1 | 207 | 268 | 4.0E-08 |
| sp|P87176|SLX8_SCHPO | E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=slx8 PE=1 SV=1 | 196 | 261 | 4.0E-08 |
| sp|Q96GF1|RN185_HUMAN | E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1 | 213 | 268 | 4.0E-08 |
| sp|Q568Y3|RN185_RAT | E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1 | 213 | 268 | 5.0E-08 |
| sp|Q5RFK9|RN185_PONAB | E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1 | 213 | 268 | 7.0E-08 |
| sp|Q6PC78|RN185_DANRE | E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2 SV=1 | 213 | 268 | 2.0E-07 |
| sp|Q95216|HLTF_RABIT | Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF PE=1 SV=1 | 216 | 261 | 4.0E-07 |
| sp|O64425|RMA1_ARATH | E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1 PE=1 SV=1 | 213 | 275 | 3.0E-06 |
| sp|Q8GUK7|RMA3_ARATH | E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1 | 194 | 265 | 4.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004842 | ubiquitin-protein transferase activity | Yes |
| GO:0005680 | anaphase-promoting complex | Yes |
| GO:0046872 | metal ion binding | Yes |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0019787 | ubiquitin-like protein transferase activity | No |
| GO:1902494 | catalytic complex | No |
| GO:0044422 | organelle part | No |
| GO:0031461 | cullin-RING ubiquitin ligase complex | No |
| GO:0003674 | molecular_function | No |
| GO:0016740 | transferase activity | No |
| GO:0043169 | cation binding | No |
| GO:0005488 | binding | No |
| GO:0044428 | nuclear part | No |
| GO:0044446 | intracellular organelle part | No |
| GO:0044464 | cell part | No |
| GO:0003824 | catalytic activity | No |
| GO:0044424 | intracellular part | No |
| GO:1990234 | transferase complex | No |
| GO:0000152 | nuclear ubiquitin ligase complex | No |
| GO:0032991 | protein-containing complex | No |
| GO:0043167 | ion binding | No |
| GO:0000151 | ubiquitin ligase complex | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2923 MPSWRLESDVDITDDWLDDTPDSVSFVTPEEPSHDSTTLDDEFVSALAENDYSSPSSYPSFLSPDQASDQQQQQQ PPPRASAPDLGSHASRSFALAGLVNNTPSRSTARSALPPLANSLGHRPSPIGSAPYAAAEMPPYSHDELPQPKRR RLSTAGALNRLILPLPSDDDDLFGDKLEDAPASDGLTTIDLTEANEVPEELKKPPVDNRIKISAFQCAICMDDVT TLTVTHCGHLYCQQCLHSSLHVDSTRGKCPMCRAKIDMKSRGSYTSKTKGFWPLELKLMTTNKKGKRKADAKP* |
| Coding | >Hirsu2|2923 ATGCCGTCCTGGCGCCTCGAGAGCGACGTCGACATCACCGACGACTGGCTCGACGACACCCCCGATAGCGTCTCC TTCGTCACGCCCGAAGAACCCTCCCACGACTCTACTACCCTCGACGACGAATTCGTGAGCGCCCTCGCCGAAAAC GACTACTCGTCTCCCTCGAGCTACCCGTCCTTCCTGAGCCCCGACCAGGCCTCAGATCAACAACAACAACAACAA CCTCCCCCGCGGGCCTCGGCGCCGGACCTCGGGTCCCATGCCAGCCGATCCTTTGCCCTCGCCGGACTCGTCAAC AACACGCCTTCGCGCTCGACGGCCCGCTCGGCCCTCCCGCCGCTGGCAAACAGCCTCGGCCACCGGCCTTCCCCG ATCGGCTCCGCACCGTACGCCGCCGCCGAAATGCCGCCCTACAGCCATGACGAGCTTCCTCAGCCGAAGCGGCGG CGCCTGTCGACAGCCGGAGCACTCAACCGCCTGATTCTGCCCCTGCCGTCGGACGACGACGACCTGTTCGGCGAC AAGCTCGAAGACGCACCCGCCTCGGATGGGCTGACCACCATCGACCTGACCGAGGCCAACGAGGTGCCAGAGGAA CTCAAGAAGCCGCCGGTCGACAACCGCATCAAGATCTCCGCCTTCCAGTGCGCCATCTGCATGGACGACGTCACC ACCCTGACCGTCACCCATTGTGGCCACCTGTACTGCCAACAATGTCTTCACTCGTCGCTGCACGTCGACTCCACG AGGGGTAAATGCCCCATGTGCCGCGCCAAGATAGACATGAAGTCTCGCGGCAGCTACACATCCAAGACCAAGGGC TTCTGGCCCCTCGAGCTGAAGCTCATGACGACGAACAAGAAGGGCAAGCGCAAAGCAGACGCCAAGCCCTGA |
| Transcript | >Hirsu2|2923 ATGCCGTCCTGGCGCCTCGAGAGCGACGTCGACATCACCGACGACTGGCTCGACGACACCCCCGATAGCGTCTCC TTCGTCACGCCCGAAGAACCCTCCCACGACTCTACTACCCTCGACGACGAATTCGTGAGCGCCCTCGCCGAAAAC GACTACTCGTCTCCCTCGAGCTACCCGTCCTTCCTGAGCCCCGACCAGGCCTCAGATCAACAACAACAACAACAA CCTCCCCCGCGGGCCTCGGCGCCGGACCTCGGGTCCCATGCCAGCCGATCCTTTGCCCTCGCCGGACTCGTCAAC AACACGCCTTCGCGCTCGACGGCCCGCTCGGCCCTCCCGCCGCTGGCAAACAGCCTCGGCCACCGGCCTTCCCCG ATCGGCTCCGCACCGTACGCCGCCGCCGAAATGCCGCCCTACAGCCATGACGAGCTTCCTCAGCCGAAGCGGCGG CGCCTGTCGACAGCCGGAGCACTCAACCGCCTGATTCTGCCCCTGCCGTCGGACGACGACGACCTGTTCGGCGAC AAGCTCGAAGACGCACCCGCCTCGGATGGGCTGACCACCATCGACCTGACCGAGGCCAACGAGGTGCCAGAGGAA CTCAAGAAGCCGCCGGTCGACAACCGCATCAAGATCTCCGCCTTCCAGTGCGCCATCTGCATGGACGACGTCACC ACCCTGACCGTCACCCATTGTGGCCACCTGTACTGCCAACAATGTCTTCACTCGTCGCTGCACGTCGACTCCACG AGGGGTAAATGCCCCATGTGCCGCGCCAAGATAGACATGAAGTCTCGCGGCAGCTACACATCCAAGACCAAGGGC TTCTGGCCCCTCGAGCTGAAGCTCATGACGACGAACAAGAAGGGCAAGCGCAAAGCAGACGCCAAGCCCTGA |
| Gene | >Hirsu2|2923 ATGCCGTCCTGGCGCCTCGAGAGCGACGTCGACATCACCGACGACTGGCTCGACGACACCCCCGATAGCGTCTCC TTCGTCACGCCCGAAGAACCCTCCCACGACTCTACTACCCTCGACGACGAATTCGTGAGCGCCCTCGCCGAAAAC GACTACTCGTCTCCCTCGAGCTACCCGTCCTTCCTGAGCCCCGACCAGGCCTCAGATCAACAACAACAACAACAA CCTCCCCCGCGGGCCTCGGCGCCGGACCTCGGGTCCCATGCCAGCCGATCCTTTGCCCTCGCCGGACTCGTCAAC AACACGCCTTCGCGCTCGACGGCCCGCTCGGCCCTCCCGCCGCTGGCAAACAGCCTCGGCCACCGGCCTTCCCCG ATCGGCTCCGCACCGTACGCCGCCGCCGAAATGCCGCCCTACAGCCATGACGAGCTTCCTCAGCCGAAGCGGCGG CGCCTGTCGACAGCCGGAGCACTCAACCGCCTGATTCTGCCCCTGCCGTCGGACGACGACGACCTGTTCGGCGAC AAGCTCGAAGACGCACCCGCCTCGGATGGGCTGACCACCATCGACCTGACCGAGGCCAACGAGGTGCCAGAGGAA CTCAAGAAGCCGCCGGTCGACAACCGCATCAAGATCTCCGCCTTCCAGTGCGCCATCTGCATGGACGACGTCACC ACCCTGACCGTCACCCATTGTGGTGCGATGCCCCTTCGTTGCCGCTCCTCTCCCTCCCCTGCCCGTGCCTGCTGC TGACGCCGTCGCCGACCATAAAAGGCCACCTGTACTGCCAACAATGTCTTCACTCGTCGCTGCACGTCGACTCCA CGAGGGGTAAATGCCCCATGTGCCGCGCCAAGATAGACATGAAGTCTCGCGGCAGCTACACATCCAAGACCAAGG GCTTCTGGCCCCTCGAGCTGAAGCTCATGACGACGAACAAGAAGGGCAAGCGCAAAGCAGACGCCAAGCCCTGA |