Protein ID | Hirsu2|2917 |
Gene name | |
Location | Contig_1728:2186..4021 |
Strand | + |
Gene length (bp) | 1835 |
Transcript length (bp) | 1545 |
Coding sequence length (bp) | 1545 |
Protein length (aa) | 515 |
Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
---|---|---|---|---|---|---|---|---|---|---|---|
Extracellular | Signal peptide | 0.1977 | 0.1183 | 0.8339 | 0.2206 | 0.1944 | 0.0915 | 0.2435 | 0.2126 | 0.261 | 0.0064 |
SignalP signal predicted | Location | Score |
---|---|---|
Yes | 1 - 20 | 0.999626 |
Orthofinder run ID | 4 |
Orthogroup | 108 |
Change Orthofinder run |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Hirsu2|2917 MKAWTCTTFLVWSIATVAEQASGPEESPVPKLKPPSFPVTGGSGSGTNTQPILSNAPSGDGPVMIEAKTAASISG PGTTNKGYLLRGDSRPPKDILKNGLKPQGNNLNLDDHLSFRGTSAAGGLSGGLYIPNFRKDAAVTANKEFAAAGE IPPEAIVGYWEVEQKDPLKRKFKINSRRSDWKKHWLASLGDYLGPKTRASGTKEAPTTSSPANRAVIDQSNKFAE NYFTTKLRQLTSGGGGYLYCAICRCGTQLVASAVDHPGGHEIAEAIACVGLDIITLIAFPVAVVTTILTTFGETI FNTIGPVEKRNFWRLLDGSFFLQHFREGWVEVRRKAFEDLNSEEYKKNVTNRFTNEQKTLEFSIAQAAGALRAET LRRAKFDKSDRLNDEQYDQLVNSTDFLGSEILEEEAEEQRKALKNNFKETLKTELNKMFDNRFVTYRKMFLGNFR RLYNKYKAPRYGVYPNKGGMFNVPSRKPMPEFMDYLKTLSKNYRLFSVQSDSAGLVAQFVNSIV* |
Coding | >Hirsu2|2917 ATGAAGGCCTGGACTTGCACTACCTTTCTAGTATGGTCTATCGCGACCGTCGCCGAGCAGGCATCCGGCCCAGAA GAGTCGCCTGTCCCGAAATTAAAGCCGCCATCGTTTCCGGTCACAGGCGGATCTGGCAGCGGAACAAATACGCAA CCAATCCTCTCAAATGCGCCGTCTGGCGATGGACCGGTGATGATCGAGGCCAAGACTGCCGCCTCCATTTCGGGC CCAGGCACAACCAATAAAGGATATCTGCTCCGGGGTGACTCCCGACCGCCCAAAGACATACTCAAGAATGGGCTC AAGCCCCAGGGTAACAACCTGAACCTTGACGATCATCTCAGCTTTCGAGGGACATCGGCTGCGGGCGGACTGTCC GGGGGACTCTACATCCCGAACTTTCGCAAGGACGCCGCCGTAACCGCCAACAAGGAGTTTGCAGCAGCTGGTGAA ATACCACCTGAGGCTATAGTCGGGTACTGGGAGGTGGAGCAAAAGGATCCTTTGAAGAGAAAATTTAAGATCAAC AGTCGGCGGAGTGATTGGAAAAAGCATTGGCTCGCTTCCCTCGGAGACTACCTGGGACCAAAAACTCGTGCTTCA GGAACCAAGGAAGCTCCAACGACTTCGAGTCCGGCCAATCGAGCGGTGATAGATCAGTCCAACAAATTCGCCGAA AACTATTTCACCACCAAGTTGCGACAACTAACCAGCGGGGGCGGCGGCTACCTCTATTGTGCCATTTGTCGCTGC GGAACGCAACTCGTGGCAAGCGCAGTGGACCACCCAGGGGGTCATGAAATTGCAGAAGCGATCGCGTGCGTCGGC CTCGACATCATCACGTTGATCGCATTTCCCGTGGCCGTGGTGACCACAATCCTCACTACTTTTGGAGAGACGATC TTCAACACAATTGGTCCGGTCGAGAAAAGAAACTTTTGGAGGCTGTTGGACGGATCCTTTTTTTTACAACACTTT AGGGAAGGCTGGGTGGAAGTTCGTCGGAAAGCATTTGAGGACCTCAACTCAGAGGAGTACAAGAAGAATGTTACC AACAGATTCACAAACGAACAGAAAACGCTTGAGTTCTCGATCGCGCAAGCGGCTGGTGCCCTACGAGCGGAAACC TTACGGCGTGCCAAATTCGACAAATCCGATCGCCTTAACGATGAGCAATACGACCAGCTCGTAAACAGCACGGAC TTCCTGGGATCGGAAATACTAGAAGAGGAAGCCGAAGAGCAAAGAAAAGCGTTAAAGAACAACTTCAAGGAGACC CTGAAAACGGAATTAAACAAAATGTTCGATAATAGATTCGTTACATACCGAAAGATGTTCCTGGGTAACTTCAGG CGCTTGTATAATAAATACAAGGCGCCCAGGTATGGTGTTTACCCCAACAAGGGTGGCATGTTTAATGTTCCGTCC CGCAAACCGATGCCTGAGTTCATGGATTATCTTAAAACTTTATCCAAAAATTACAGGCTATTTTCTGTGCAATCC GACAGTGCAGGATTGGTAGCTCAGTTCGTAAATTCGATAGTTTAG |
Transcript | >Hirsu2|2917 ATGAAGGCCTGGACTTGCACTACCTTTCTAGTATGGTCTATCGCGACCGTCGCCGAGCAGGCATCCGGCCCAGAA GAGTCGCCTGTCCCGAAATTAAAGCCGCCATCGTTTCCGGTCACAGGCGGATCTGGCAGCGGAACAAATACGCAA CCAATCCTCTCAAATGCGCCGTCTGGCGATGGACCGGTGATGATCGAGGCCAAGACTGCCGCCTCCATTTCGGGC CCAGGCACAACCAATAAAGGATATCTGCTCCGGGGTGACTCCCGACCGCCCAAAGACATACTCAAGAATGGGCTC AAGCCCCAGGGTAACAACCTGAACCTTGACGATCATCTCAGCTTTCGAGGGACATCGGCTGCGGGCGGACTGTCC GGGGGACTCTACATCCCGAACTTTCGCAAGGACGCCGCCGTAACCGCCAACAAGGAGTTTGCAGCAGCTGGTGAA ATACCACCTGAGGCTATAGTCGGGTACTGGGAGGTGGAGCAAAAGGATCCTTTGAAGAGAAAATTTAAGATCAAC AGTCGGCGGAGTGATTGGAAAAAGCATTGGCTCGCTTCCCTCGGAGACTACCTGGGACCAAAAACTCGTGCTTCA GGAACCAAGGAAGCTCCAACGACTTCGAGTCCGGCCAATCGAGCGGTGATAGATCAGTCCAACAAATTCGCCGAA AACTATTTCACCACCAAGTTGCGACAACTAACCAGCGGGGGCGGCGGCTACCTCTATTGTGCCATTTGTCGCTGC GGAACGCAACTCGTGGCAAGCGCAGTGGACCACCCAGGGGGTCATGAAATTGCAGAAGCGATCGCGTGCGTCGGC CTCGACATCATCACGTTGATCGCATTTCCCGTGGCCGTGGTGACCACAATCCTCACTACTTTTGGAGAGACGATC TTCAACACAATTGGTCCGGTCGAGAAAAGAAACTTTTGGAGGCTGTTGGACGGATCCTTTTTTTTACAACACTTT AGGGAAGGCTGGGTGGAAGTTCGTCGGAAAGCATTTGAGGACCTCAACTCAGAGGAGTACAAGAAGAATGTTACC AACAGATTCACAAACGAACAGAAAACGCTTGAGTTCTCGATCGCGCAAGCGGCTGGTGCCCTACGAGCGGAAACC TTACGGCGTGCCAAATTCGACAAATCCGATCGCCTTAACGATGAGCAATACGACCAGCTCGTAAACAGCACGGAC TTCCTGGGATCGGAAATACTAGAAGAGGAAGCCGAAGAGCAAAGAAAAGCGTTAAAGAACAACTTCAAGGAGACC CTGAAAACGGAATTAAACAAAATGTTCGATAATAGATTCGTTACATACCGAAAGATGTTCCTGGGTAACTTCAGG CGCTTGTATAATAAATACAAGGCGCCCAGGTATGGTGTTTACCCCAACAAGGGTGGCATGTTTAATGTTCCGTCC CGCAAACCGATGCCTGAGTTCATGGATTATCTTAAAACTTTATCCAAAAATTACAGGCTATTTTCTGTGCAATCC GACAGTGCAGGATTGGTAGCTCAGTTCGTAAATTCGATAGTTTAG |
Gene | >Hirsu2|2917 ATGAAGGCCTGGACTTGCACTACCTTTCTAGTATGGTCTATCGCGACCGTCGCCGAGCAGGCATCCGGCCCAGAA GAGTCGCCTGTCCCGAAATTAAAGCCGCCATCGTTTCCGGTCACAGGCGGATCTGGCAGCGGAACAAATACGCAA CCAATCCTCTCAAATGCGCCGTCTGGCGATGGACCGGTGATGATCGAGGCCAAGACTGCCGCCTCCATTTCGGGC CCAGGCACAACCAATAAAGGATATCTGCTCCGGGGTGACTCCCGACCGCCCAAAGACATACTCAAGAATGGGCTC AAGCCCCAGGGTAACAACCTGAACCTTGACGATCATCTCAGCTTTCGAGGGACATCGGCTGCGGGCGGACTGTCC GGGTATGTGTCAACCACACATTCCTATGGAAATGCTTTAGGATACGCCTTTAGCCGGACAGGCGTCAAACAAGAA ATAGGCTACGTTTAAAAGATCGACCCAGAACTTGTTCCCAGGGGACTCTACATCCCGAACTTTCGCAAGGACGCC GCCGTAACCGCCAACAAGGAGTTTGCAGCAGCTGGTGAAATACCACCTGAGGCTATAGTCGGGTACTGGGAGGTG GAGCAAAAGGATCCTTTGAAGAGAAAATTTAAGATCAACAGTCGGCGGAGTGATTGGAAAAAGCATTGGCTCGCT TCCCTCGGAGACTACCTGGGACCAAAAACTCGTGCTTCAGGAACCAAGGAAGCTCCAACGACTTCGAGTCCGGCC AATCGAGCGGTGATAGATCAGTCCAACAAATTCGCCGAAAACTATTTCACCACCAAGTTGCGACAACTAACCAGC GGTTCTCGGGGGAGCGTGCAGCCGGCGACTATCTTCAGGGACATGAAGGCAAGAACTATAACGTCTTTGAAGTCA TACCGGGGGCCGAAAGGGGTCTTGGCGGCCCTGGCCCTGGGAATCTATGTGGAACATAACTATGAAGTCTTTTCC TCGGAAAATTCCACTACCTTAGACAAGGGGGCGGCGGCTACCTCTATTGTGCCATTTGTCGCTGCGGAACGCAAC TCGTGGCAAGCGCAGTGGACCACCCAGGGGGTCATGAAATTGCAGAAGCGATCGCGTGCGTCGGCCTCGACATCA TCACGTTGATCGCATTTCCCGTGGCCGTGGTGACCACAATCCTCACTACTTTTGGAGAGACGATCTTCAACACAA TTGGTCCGGTCGAGAAAAGAAACTTTTGGAGGCTGTTGGACGGATCCTTTTTTTTACAACACTTTAGGGAAGGCT GGGTGGAAGTTCGTCGGAAAGCATTTGAGGACCTCAACTCAGAGGAGTACAAGAAGAATGTTACCAACAGATTCA CAAACGAACAGAAAACGCTTGAGTTCTCGATCGCGCAAGCGGCTGGTGCCCTACGAGCGGAAACCTTACGGCGTG CCAAATTCGACAAATCCGATCGCCTTAACGATGAGCAATACGACCAGCTCGTAAACAGCACGGACTTCCTGGGAT CGGAAATACTAGAAGAGGAAGCCGAAGAGCAAAGAAAAGCGTTAAAGAACAACTTCAAGGAGACCCTGAAAACGG AATTAAACAAAATGTTCGATAATAGATTCGTTACATACCGAAAGATGTTCCTGGGTAACTTCAGGCGCTTGTATA ATAAATACAAGGCGCCCAGGTATGGTGTTTACCCCAACAAGGGTGGCATGTTTAATGTTCCGTCCCGCAAACCGA TGCCTGAGTTCATGGATTATCTTAAAACTTTATCCAAAAATTACAGGCTATTTTCTGTGCAATCCGACAGTGCAG GATTGGTAGCTCAGTTCGTAAATTCGATAGTTTAG |