© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|2871 |
| Gene name | |
| Location | Contig_171:68..694 |
| Strand | + |
| Gene length (bp) | 626 |
| Transcript length (bp) | 549 |
| Coding sequence length (bp) | 549 |
| Protein length (aa) | 183 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF08695 | Coa1 | Cytochrome oxidase complex assembly protein 1 | 2.9E-37 | 21 | 137 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P40452|COA1_YEAST | Cytochrome c oxidase assembly factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COA1 PE=1 SV=1 | 4 | 144 | 7.0E-22 |
| sp|O14320|COA1_SCHPO | Cytochrome c oxidase assembly factor 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coa1 PE=3 SV=1 | 2 | 142 | 8.0E-12 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 33 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 19 | 38 | 19 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|2871 MTRRADRELPDIQQVGFRWWRTLPLFVGLVAASALAIFNYQKTTSPIVASTLYALRTSPRARARLGDDIYFRRAV PWIAGEMNQLRGRVDVRFGVRGSAGAATMRFVSRRPGPRALFETLEWSLTMDDDGEWVDLLEGAGADPFRALLAD DDEPPPLGAPPGTPPHEAPSTRGFRQQGALNK* |
| Coding | >Hirsu2|2871 ATGACGCGGCGGGCCGACCGCGAGCTCCCAGACATCCAGCAGGTCGGCTTCCGCTGGTGGCGCACGCTGCCGCTC TTCGTCGGGCTGGTGGCGGCGTCGGCGCTGGCCATCTTCAACTACCAGAAGACGACGTCGCCGATCGTGGCGTCG ACGCTGTACGCGCTGCGGACGTCGCCGCGGGCGCGCGCCCGCCTCGGCGACGACATCTACTTCCGCCGCGCCGTG CCGTGGATCGCGGGCGAGATGAACCAGCTGCGCGGCCGCGTCGACGTCCGCTTCGGCGTCCGCGGCTCCGCCGGC GCCGCTACCATGCGCTTCGTCAGCCGCCGCCCGGGCCCGCGCGCGCTCTTCGAGACGCTCGAGTGGAGCCTGACC ATGGACGACGACGGCGAGTGGGTCGACCTGCTTGAGGGCGCCGGCGCCGACCCCTTCCGTGCCCTGCTCGCCGAC GACGACGAGCCGCCGCCGCTCGGGGCGCCGCCCGGGACGCCGCCGCACGAGGCTCCATCCACCAGGGGTTTCAGG CAGCAGGGCGCCCTGAACAAGTGA |
| Transcript | >Hirsu2|2871 ATGACGCGGCGGGCCGACCGCGAGCTCCCAGACATCCAGCAGGTCGGCTTCCGCTGGTGGCGCACGCTGCCGCTC TTCGTCGGGCTGGTGGCGGCGTCGGCGCTGGCCATCTTCAACTACCAGAAGACGACGTCGCCGATCGTGGCGTCG ACGCTGTACGCGCTGCGGACGTCGCCGCGGGCGCGCGCCCGCCTCGGCGACGACATCTACTTCCGCCGCGCCGTG CCGTGGATCGCGGGCGAGATGAACCAGCTGCGCGGCCGCGTCGACGTCCGCTTCGGCGTCCGCGGCTCCGCCGGC GCCGCTACCATGCGCTTCGTCAGCCGCCGCCCGGGCCCGCGCGCGCTCTTCGAGACGCTCGAGTGGAGCCTGACC ATGGACGACGACGGCGAGTGGGTCGACCTGCTTGAGGGCGCCGGCGCCGACCCCTTCCGTGCCCTGCTCGCCGAC GACGACGAGCCGCCGCCGCTCGGGGCGCCGCCCGGGACGCCGCCGCACGAGGCTCCATCCACCAGGGGTTTCAGG CAGCAGGGCGCCCTGAACAAGTGA |
| Gene | >Hirsu2|2871 ATGACGCGGCGGGCCGACCGCGAGCTCCCAGGTGAGCGCTCCCCGAATCCCCCCCTCCCCAAGAAAAGGAGGTGA GGGGGGGGAAAGAGGCTGACGGAGCAGGAGCAGACATCCAGCAGGTCGGCTTCCGCTGGTGGCGCACGCTGCCGC TCTTCGTCGGGCTGGTGGCGGCGTCGGCGCTGGCCATCTTCAACTACCAGAAGACGACGTCGCCGATCGTGGCGT CGACGCTGTACGCGCTGCGGACGTCGCCGCGGGCGCGCGCCCGCCTCGGCGACGACATCTACTTCCGCCGCGCCG TGCCGTGGATCGCGGGCGAGATGAACCAGCTGCGCGGCCGCGTCGACGTCCGCTTCGGCGTCCGCGGCTCCGCCG GCGCCGCTACCATGCGCTTCGTCAGCCGCCGCCCGGGCCCGCGCGCGCTCTTCGAGACGCTCGAGTGGAGCCTGA CCATGGACGACGACGGCGAGTGGGTCGACCTGCTTGAGGGCGCCGGCGCCGACCCCTTCCGTGCCCTGCTCGCCG ACGACGACGAGCCGCCGCCGCTCGGGGCGCCGCCCGGGACGCCGCCGCACGAGGCTCCATCCACCAGGGGTTTCA GGCAGCAGGGCGCCCTGAACAAGTGA |