© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Hirsu2|287 |
| Gene name | |
| Location | Contig_1053:3475..4909 |
| Strand | + |
| Gene length (bp) | 1434 |
| Transcript length (bp) | 1227 |
| Coding sequence length (bp) | 1227 |
| Protein length (aa) | 409 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Cytoplasm | 0.5563 | 0.5138 | 0.385 | 0.0601 | 0.1728 | 0.1961 | 0.2613 | 0.1261 | 0.2202 | 0.0278 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 262 | 284 | 22 |
| Orthofinder run ID | 4 |
| Orthogroup | 9199 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Ophiocordyceps subramaniannii | Hirsu2|287 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Hirsu2|287 MRSSLAPLRLAPRGRGDLFFPWREGGKKAKAPSFPAVDSDWRSGCFRRDDEAGDRAAGRMDGAAKAGNGREKKKK KEEGIQEYKIDYSENQKQVGRHRALRSWARVAESARRGSGAQAGVAGDVEARAYPVLYSHACRAGCSAAGRPPAS IPGRASGLSLGPDRFNGYLAASFLLLILPLLDIDRLHLSFPFSSLSASRRPSIARRSPVVVIIRLQGNGPVQTAA APIVTNPSSPRQVLRKTSGDFGPIKGRRSRAKRSAPAIFILPVLACLVSLALSFPLFFSPSSSLARSRSRAAGSD CLYRILAAAAAAAEARDRLRRGPSAPVRSASARSAPWSAETADLQFQGLRHSPFACLPVSLLRSRGHVDFYLFPL LFAPSALGLAMGRRAEVGEAWRPSCKWRAGEPL* |
| Coding | >Hirsu2|287 ATGCGCTCCAGCCTCGCTCCGCTGCGCCTCGCCCCCCGGGGCCGAGGCGACCTCTTCTTCCCTTGGAGGGAGGGA GGAAAGAAAGCAAAGGCGCCGTCCTTCCCCGCCGTCGACTCCGACTGGAGAAGCGGGTGCTTTCGACGAGATGAC GAGGCCGGCGACCGCGCAGCAGGGAGAATGGACGGGGCGGCGAAGGCAGGAAACGGAAGGGAGAAGAAGAAAAAA AAGGAAGAAGGGATTCAGGAATACAAAATAGATTACAGCGAGAATCAAAAACAAGTCGGCCGCCACAGGGCGCTC CGGAGCTGGGCCCGGGTCGCCGAATCGGCCAGACGAGGCTCTGGCGCTCAGGCTGGCGTCGCAGGCGATGTGGAG GCGAGGGCCTACCCTGTATTGTACAGCCACGCCTGTCGGGCTGGCTGCAGCGCTGCTGGGAGGCCCCCTGCGTCC ATCCCGGGGCGTGCGTCGGGCCTGTCGCTTGGCCCTGATCGGTTCAACGGCTACCTCGCAGCCTCATTCCTCCTC CTCATCCTCCCTCTCCTAGACATCGACCGGCTGCATCTCTCCTTTCCTTTCTCTTCTCTATCCGCTTCCCGCCGG CCAAGCATCGCCCGTCGCTCTCCCGTCGTCGTCATCATCAGGCTGCAAGGGAACGGGCCCGTGCAAACAGCTGCA GCCCCGATCGTCACAAACCCTTCATCTCCTCGCCAGGTTTTACGCAAGACATCCGGCGACTTTGGGCCAATCAAG GGGCGCCGGTCGCGGGCGAAGCGCTCAGCACCAGCCATCTTCATATTACCTGTACTCGCCTGTCTCGTCTCTCTT GCTCTCTCATTCCCTCTCTTCTTCTCTCCCTCTTCTTCTCTCGCTCGCTCTCGCTCGCGCGCTGCTGGATCCGAC TGTCTGTATCGTATCTTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCGCGATAGGCTGCGCCGTGGGCCTTCTGCG CCCGTCCGCTCCGCTTCCGCCCGCAGCGCCCCATGGTCGGCAGAAACAGCTGACCTCCAATTCCAAGGCCTGCGG CACAGCCCATTCGCCTGTCTTCCCGTCTCCCTGCTACGTAGCCGCGGCCACGTTGATTTTTATTTGTTTCCACTC CTTTTCGCCCCCTCGGCTCTCGGTCTCGCGATGGGGCGGCGCGCCGAGGTCGGTGAGGCCTGGCGACCGAGCTGC AAATGGCGCGCCGGGGAGCCGCTGTGA |
| Transcript | >Hirsu2|287 ATGCGCTCCAGCCTCGCTCCGCTGCGCCTCGCCCCCCGGGGCCGAGGCGACCTCTTCTTCCCTTGGAGGGAGGGA GGAAAGAAAGCAAAGGCGCCGTCCTTCCCCGCCGTCGACTCCGACTGGAGAAGCGGGTGCTTTCGACGAGATGAC GAGGCCGGCGACCGCGCAGCAGGGAGAATGGACGGGGCGGCGAAGGCAGGAAACGGAAGGGAGAAGAAGAAAAAA AAGGAAGAAGGGATTCAGGAATACAAAATAGATTACAGCGAGAATCAAAAACAAGTCGGCCGCCACAGGGCGCTC CGGAGCTGGGCCCGGGTCGCCGAATCGGCCAGACGAGGCTCTGGCGCTCAGGCTGGCGTCGCAGGCGATGTGGAG GCGAGGGCCTACCCTGTATTGTACAGCCACGCCTGTCGGGCTGGCTGCAGCGCTGCTGGGAGGCCCCCTGCGTCC ATCCCGGGGCGTGCGTCGGGCCTGTCGCTTGGCCCTGATCGGTTCAACGGCTACCTCGCAGCCTCATTCCTCCTC CTCATCCTCCCTCTCCTAGACATCGACCGGCTGCATCTCTCCTTTCCTTTCTCTTCTCTATCCGCTTCCCGCCGG CCAAGCATCGCCCGTCGCTCTCCCGTCGTCGTCATCATCAGGCTGCAAGGGAACGGGCCCGTGCAAACAGCTGCA GCCCCGATCGTCACAAACCCTTCATCTCCTCGCCAGGTTTTACGCAAGACATCCGGCGACTTTGGGCCAATCAAG GGGCGCCGGTCGCGGGCGAAGCGCTCAGCACCAGCCATCTTCATATTACCTGTACTCGCCTGTCTCGTCTCTCTT GCTCTCTCATTCCCTCTCTTCTTCTCTCCCTCTTCTTCTCTCGCTCGCTCTCGCTCGCGCGCTGCTGGATCCGAC TGTCTGTATCGTATCTTAGCAGCAGCAGCAGCAGCAGCAGAAGCTCGCGATAGGCTGCGCCGTGGGCCTTCTGCG CCCGTCCGCTCCGCTTCCGCCCGCAGCGCCCCATGGTCGGCAGAAACAGCTGACCTCCAATTCCAAGGCCTGCGG CACAGCCCATTCGCCTGTCTTCCCGTCTCCCTGCTACGTAGCCGCGGCCACGTTGATTTTTATTTGTTTCCACTC CTTTTCGCCCCCTCGGCTCTCGGTCTCGCGATGGGGCGGCGCGCCGAGGTCGGTGAGGCCTGGCGACCGAGCTGC AAATGGCGCGCCGGGGAGCCGCTGTGA |
| Gene | >Hirsu2|287 ATGCGCTCCAGCCTCGCTCCGCTGCGCCTCGCCCCCCGGGGCCGAGGCGACCTCTTCTTCCCTTGGAGGGAGGGA GGAAAGAAAGCAAAGGCGCCGTCCTTCCCCGCCGTCGACTCCGACTGGAGAAGCGGGTGCTTTCGACGAGATGAC GAGGCCGGCGACCGCGCAGCAGGGAGAATGGACGGGGCGGCGAAGGCAGGAAACGGAAGGGAGAAGAAGAAAAAA AAGGAAGAAGGGATTCAGGAATACAAAATAGATTACAGCGAGAATCAAAAACAAGTCGGCCGCCACAGGGCGCTC CGGAGCTGGGCCCGGGTCGCCGAATCGGCCAGACGAGGCTCTGGCGCTCAGGCTGGCGTCGCAGGCGATGTGGAG GCGAGGGCCTACCCTGTATTGTACAGCCACGCCTGTCGGTACTCACCACTAGAGGTAGCTTAGTCCTGCTTCTCC ACTCCATCCCGCAGATTCCGACCAGGGGGCGAGGTACCTGCCCGGCCGCCCTCGTGCCGCCGCGTGCACATGTAC TCTTTTGGGACCTGCACCATCGCCAATTGCTTCAACACAGGGCTGGCTGCAGCGCTGCTGGGAGGCCCCCTGCGT CCATCCCGGGGCGTGCGTCGGGCCTGTCGCTTGGCCCTGATCGGTTCAACGGCTACCTCGCAGCCTCATTCCTCC TCCTCATCCTCCCTCTCCTAGACATCGACCGGCTGCATCTCTCCTTTCCTTTCTCTTCTCTATCCGCTTCCCGCC GGCCAAGCATCGCCCGTCGCTCTCCCGTCGTCGTCATCATCAGGCTGCAAGGGAACGGGCCCGTGCAAACAGCTG CAGCCCCGATCGTCACAAACCCTTCATCTCCTCGCCAGGTTTTACGCAAGACATCCGGCGACTTTGGGCCAATCA AGGGGCGCCGGTCGCGGGCGAAGCGCTCAGCACCAGCCATCTTCATATTACCTGTACTCGCCTGTCTCGTCTCTC TTGCTCTCTCATTCCCTCTCTTCTTCTCTCCCTCTTCTTCTCTCGCTCGCTCTCGCTCGCGCGCTGCTGGATCCG ACTGTCTGTATCGTATCTGTCTGTGTATTCACCAAGGTATCGACTTGGCAACCCTACTCTAGCCTTCTAGCAGTA GCAGCAGCAGCAGCAGCAGCAGAAGCTCGCGATAGGCTGCGCCGTGGGCCTTCTGCGCCCGTCCGCTCCGCTTCC GCCCGCAGCGCCCCATGGTCGGCAGAAACAGCTGACCTCCAATTCCAAGGCCTGCGGCACAGCCCATTCGCCTGT CTTCCCGTCTCCCTGCTACGTAGCCGCGGCCACGTTGATTTTTATTTGTTTCCACTCCTTTTCGCCCCCTCGGCT CTCGGTCTCGCGATGGGGCGGCGCGCCGAGGTCGGTGAGGCCTGGCGACCGAGCTGCAAATGGCGCGCCGGGGAG CCGCTGTGA |